TCONS_00029374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029374
Unique NameTCONS_00029374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029374 ID=TCONS_00029374|Name=TCONS_00029374|organism=Clytia hemisphaerica|type=transcript|length=735bp
atctgaaattcattAATTATTTATATTGACGtcataaaacaagaaaaaaa
tttctcttccAGAGCGCACAAAAAACGCCATTGAAGTTGAAATACCTCAA
CTTCCACAAGCGCATATCATATTTTTCTATAGTTCGTATTtatttaacca
atcagattaaACAAATAAACTGATTCAACACTTTTATCGTTTTATCTTCA
GCTCTCAAAAATGAGCTGGGAGAGTTTATGAACAAGCGTTTTAAAAGACG
AAGCGCACATAAAGAGAGTGCAAATTTAAAGGAAACCCGCTATAGTCAGA
CAAATTTGGGATAAAATAGTAGGCCCGATTTGTGTTAAAATCgtgcaaat
ttggaacaaaTCACCAAATTTGGACCAGNTATAAAGAGAGGGCAAATTTA
AAGGAAACCCGCTATAGTCAGACAAATTTGGGATAAAATAGTAGGCCCGA
TTTGTGTTAAAATCgtgcaaatttggaacaaaTCACCAAATTTGGACCAG
ATGCTCATTATACCCTATAGATTAATATTAGAAGGGTAAACCAAGATAAT
TAAGAGGGTTACCCTCTTAATTAGGGCCAATTAGGCTAATTTGGCCTCAT
TAAGCCTAAAACGACGATTTTCCTGGGTGCTGTACCCCAAAAAGCATCAA
TTTTCCAATCATTtggattcaaatcattcttaaagggataatcagatggt
ttttGATATTCGGCCTAGAGATACCTTCCGTGATC
Run BLAST on NCBI

transcript from alignment at sc0000744:17762..18496

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029374 ID=TCONS_00029374|Name=TCONS_00029374|organism=Clytia hemisphaerica|type=transcript|length=735bp|location=Sequence derived from alignment at sc0000744:17762..18496 (Clytia hemisphaerica)
GATCACGGAAGGTATCTCTAGGCCGAATATCaaaaaccatctgattatcc
ctttaagaatgatttgaatccaAATGATTGGAAAATTGATGCTTTTTGGG
GTACAGCACCCAGGAAAATCGTCGTTTTAGGCTTAATGAGGCCAAATTAG
CCTAATTGGCCCTAATTAAGAGGGTAACCCTCTTAATTATCTTGGTTTAC
CCTTCTAATATTAATCTATAGGGTATAATGAGCATCTGGTCCAAATTTGG
TGAtttgttccaaatttgcacGATTTTAACACAAATCGGGCCTACTATTT
TATCCCAAATTTGTCTGACTATAGCGGGTTTCCTTTAAATTTGCCCTCTC
TTTATANCTGGTCCAAATTTGGTGAtttgttccaaatttgcacGATTTTA
ACACAAATCGGGCCTACTATTTTATCCCAAATTTGTCTGACTATAGCGGG
TTTCCTTTAAATTTGCACTCTCTTTATGTGCGCTTCGTCTTTTAAAACGC
TTGTTCATAAACTCTCCCAGCTCATTTTTGAGAGCTGAAGATAAAACGAT
AAAAGTGTTGAATCAGTTTATTTGTttaatctgattggttaaataAATAC
GAACTATAGAAAAATATGATATGCGCTTGTGGAAGTTGAGGTATTTCAAC
TTCAATGGCGTTTTTTGTGCGCTCTggaagagaaatttttttcttgtttt
atgaCGTCAATATAAATAATTaatgaatttcagat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016750XLOC_016750Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029374-exon-sc0000744-1491911889:17762..18496TCONS_00029374-exon-sc0000744-1491911889:17762..18496Clytia hemisphaericaexon
TCONS_00029374-exon-sc0000744-1510915933:17762..18496TCONS_00029374-exon-sc0000744-1510915933:17762..18496Clytia hemisphaericaexon
TCONS_00029374-exon-sc0000744-1575043694:17762..18496TCONS_00029374-exon-sc0000744-1575043694:17762..18496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000744supercontigsc0000744:17762..18496 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.472137	0.591953	0.916419	1.34486	0.272873	0.287504	0.260146	0.0811818	0.0568373	0.422413	0.410004	0.314441	0.0897153	0.745362	0.114898	0.082202	0	0	0	0.0750277	0.260851	0.0954255	0.0773348	0.0703085	0.289664	0.387778	0	0	0.0748622	0.152546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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