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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029356 ID=TCONS_00029356|Name=TCONS_00029356|organism=Clytia hemisphaerica|type=transcript|length=1175bp
CCGGACACACCAGAAGAAAGTGATACAAGCTACACTCCGGCGTTTTTGTA
GACATCTACAATTCAGTCTAGCTTTGACGCGGATGGTTCCCGCCCACGAA
AGTCTATGATGCGTCACATAGGGAGGATATATACATGTATAAATAGTGCA
GTTTGAAACCGAGTAAAGACATCATCCAGTCAATATCGAAGAAGGAATTC
AATTCAAGATgaactttttcatgttttcattaGCCTTTTTGGTAACTTTA
AACgtTATTGGAATAGCCCTAGGTGAATACCCACCAGCGGTAGGACAAAA
AGCAGGAGAAGATCCTTGCAAATATCATTATAAATATTGTAATGGAGTTG
ATTCTGGGCAATACGAAACTTACGACGCTCACGTTGCTGTTCAATGTGGT
GCTAATTACCAATTAGAATATTGTTATTATTGTCCTTATGGTGAACAGAT
CAAGCTTATATCATCAACTGAAAACCCAATCTGTCTACCTGGCTATACCA
CATATACCGCACACATAGAAGAAGTCCACTATAAATATTGTAAAAACAAA
TACTGCGAAGGTAAAAGTAAAGGCCGATATACAATTGACAACAGCTATCT
TGCACCATTCATTATTGAATGTGAAGGGAATTGCCGAGCCAAACATTGTT
ATTTTTGTAAAGGGGAAGATGAAATTAGTGATCCTGCTGTCAATCCTGAA
AAACCACCGACATGTAATGCTCCTCAAACATTCGGCGATTTCATTTAAAT
AAAGGTGTGGTATATACGTAATTTGAGGTGATGATGGCACAACCgtatta
tcaatttttttttacaaaggaatcttttttaattcaaacctTTATTACTC
GAAGGTCTCCtttttcttaactcgaacaaattttgtTGTCCCCTTAATGA
CGATACGTTATAAACACTATATTACTCTATAGCTCGAAATTTCGTTAACT
AGAACAGGTTTGTATTCttcgtgcgtgttcgagttatagagattccACTT
TATAAACTTTAGTTATTTGTACTAACTATTAATGAAAGAAAAGTTCTTAT
TTACAGCCCGTTGTCATGTTCTGGGTCGGTCCCCTTCTATCTACTGGTGA
TATTGCCTGTAAAATTGTTAcaagttatatttttttcataatctacaatg
aaaaatgtaaagattTGTATTATTT Run BLAST on NCBI transcript from alignment at sc0000744:69211..72044+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029356 ID=TCONS_00029356|Name=TCONS_00029356|organism=Clytia hemisphaerica|type=transcript|length=2834bp|location=Sequence derived from alignment at sc0000744:69211..72044+ (Clytia hemisphaerica)
CCGGACACACCAGAAGAAAGTGATACAAGCTACACTCCGGCGTTTTTGTA
GACATCTACAATTCAGTCTAGCTTTGACGCGGATGGTTCCCGCCCACGAA
AGTCTATGATGCGTCACATAGGGAGGATATATACATGTATAAATAGTGCA
GTTTGAAACCGAGTAAAGACATCATCCAGTCAATATCGAAGAAGGAATTC
AATTCAAGATgaactttttcatgttttcattaGCCTTTTTGGTAACTTTA
AACggtgagatttttttcaaactttatagCTTATAAGTTAATCGAAGGTA
GATTTCAGTTTCTCCAATAAGGAAGTACTGTGAGCTTTACATGCATTAAA
TAGTGTACAAAGAGTGATGTTTCGCCATAACGGTTTTTAAAAAGTCAAGA
CGTGTGACTATATGAGGTACGGCTATTATTTTACATAAGAATGAGAGTGT
ACGTATTTAATTTGCGCTTTCAAGAACGGTGGAGGGATTGGAAGCGATAA
ATgttctttttactttgaaaaaatgtggtcgggCCCAAGGCCCGGGTGCT
TCCCCCGGATGCCGCGGCCTCTGCAACTTTAGGACTTATACaatttattc
ttcttttttagtTATTGGAATAGCCCTAGGTGAATACCCACCAGCGGTAG
GACAAAAAGCAGGAGAAGATCCTTGCAAATATCATTATAAATATTGTAAT
GGAGTTGATTCTGGGCAATACGAAACTTACGACGCTCACGTTGCTGTTCA
ATGTGGTGCTAATTACCAATTAGAATATTGTTATTATTGTCCTTATGGTG
AACAGATCAAGCTTATATCATCAACTGAAAACCCAATCTGTCTACCTGGC
TATACCACATATACCGCACACATAGAAGAAGTCCACTATAAATATTGTAA
AAACAAATACTGCGAAGGTAAAAGTAAAGGCCGATATACAATTGACAACA
GCTATCTTGCACCATTCATTATTGAATGTGAAGGGAATTGCCGAGCCAAA
CATTGTTATTTTTGTAAAGGGGAAGATGAAATTAGTGATCCTGCTGTCAA
TCCTGAAAAACCACCGACATGTAATGCTCCTCAAACATTCGGCGATTTCA
TTTAAATAAAGGTAGTTATATTTATATAACTGTTTAGGGCGATTTTCACT
TTTATGTGACCTGAGATCAGATCGAcattgttttctgcacaccacacTAA
AAGTTtgaagggatgtgtgaaaagaAGCGATCTGACAAATAAGTTATCTC
GAATTTGTTAAGACTGTGCTACACTAAAATGGGAATGCCAACAAAGTAGG
AATTGCGTTAAAAATTATAACAATATGTTATCAAGttcatctttataaga
acaaacaatataagaacataaggcttaggtagccaaaatattaagaacaa
attaagaacctTTCAAGGCTTTATGGTATCATGAAcatacccaatttctt
agaaaattgcataaaaatactcacaaaatagtgataatattttcaggctt
taaactcaaaaagttgagaacatccgaaatcttcaaaaatgcTATATACC
CTCCTATATATATCCCTATATGCCCATCATCCCATCAAGGATATCGAATA
ATTACGAATTTTTGTATTTCCCTCATAGGTGTGGTATATACGTAATTTGA
GGTGATGATGGCACAACCgtattatcaatttttttttacaaaggaatctt
ttttaattcaaacctTTATTACTCGAAGGTCTCCtttttcttaactcgaa
caaattttgtTGTCCCCTTAATGACGATACGTTATAAACACTATATTACT
CTATAGCTCGAAATTTCGTTAACTAGAACAGGTTTGTATTCttcgtgcgt
gttcgagttatagagattccACTTTATAAACTTTAGTTATTTGTACTAAC
TATTAATGAAAGAAAAGTTCTTATTTACAGCCCGTTGTCATGTTCTGGGT
CGGTCCCCTTCTATCTACTGGTGATATTGCCTGTAAAATTGTTAcaagtt
atatttttttcataatctacaatgaaaaatgtaaagattTGTATTATTTG
CCTACGAAAAGAATTAGAAATCgccttactctcgggtacctaatagccgg
ggggtttggaataagcagggNtcatctttataagaacaaacaatataaga
acataaggcttaggtagccaaaatattaagaacaaattaagaacctTTCA
AGGCTTTATGGTATCATGAAcatacccaatttcttagaaaattgcataaa
aatactcacaaaatagtgataatattttcaggctttaaactcaaaaagtt
gagaacatccgaaatcttcaaaaatgcTATATACCCTCCTATATATATCC
CTATATGCCCATCATCCCATCAAGGATATCGAATAATTACGAATTTTTGT
ATTTCCCTCATAGGTGTGGTATATACGTAATTTGAGGTGATGATGGCACA
ACCgtattatcaatttttttttacaaaggaatcttttttaattcaaacct
TTATTACTCGAAGGTCTCCtttttcttaactcgaacaaattttgtTGTCC
CCTTAATGACGATACGTTATAAACACTATATTACTCTATAGCTCGAAATT
TCGTTAACTAGAACAGGTTTGTATTCttcgtgcgtgttcgagttatagag
attccACTTTATAAACTTTAGTTATTTGTACTAACTATTAATGAAAGAAA
AGTTCTTATTTACAGCCCGTTGTCATGTTCTGGGTCGGTCCCCTTCTATC
TACTGGTGATATTGCCTGTAAAATTGTTAcaagttatatttttttcataa
tctacaatgaaaaatgtaaagattTGTATTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029356-exon-sc0000744-1491911889:69211..69464 | TCONS_00029356-exon-sc0000744-1491911889:69211..69464 | Clytia hemisphaerica | exon |
| TCONS_00029356-exon-sc0000744-1510915933:69211..69464 | TCONS_00029356-exon-sc0000744-1510915933:69211..69464 | Clytia hemisphaerica | exon |
| TCONS_00029356-exon-sc0000744-1575043694:69211..69464 | TCONS_00029356-exon-sc0000744-1575043694:69211..69464 | Clytia hemisphaerica | exon |
| TCONS_00029356-exon-sc0000744-1491911889:69822..70321 | TCONS_00029356-exon-sc0000744-1491911889:69822..70321 | Clytia hemisphaerica | exon |
| TCONS_00029356-exon-sc0000744-1510915933:69822..70321 | TCONS_00029356-exon-sc0000744-1510915933:69822..70321 | Clytia hemisphaerica | exon |
| TCONS_00029356-exon-sc0000744-1575043694:69822..70321 | TCONS_00029356-exon-sc0000744-1575043694:69822..70321 | Clytia hemisphaerica | exon |
| TCONS_00029356-exon-sc0000744-1491911889:71624..72044 | TCONS_00029356-exon-sc0000744-1491911889:71624..72044 | Clytia hemisphaerica | exon |
| TCONS_00029356-exon-sc0000744-1510915933:71624..72044 | TCONS_00029356-exon-sc0000744-1510915933:71624..72044 | Clytia hemisphaerica | exon |
| TCONS_00029356-exon-sc0000744-1575043694:71624..72044 | TCONS_00029356-exon-sc0000744-1575043694:71624..72044 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000744 | supercontig | sc0000744:69211..72044 + |
Blast
The following BLAST results are available for this feature:
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