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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029355 ID=TCONS_00029355|Name=TCONS_00029355|organism=Clytia hemisphaerica|type=transcript|length=913bp
CCGGACACACCAGAAGAAAGTGATACAAGCTACACTCCGGCGTTTTTGTA
GACATCTACAATTCAGTCTAGCTTTGACGCGGATGGTTCCCGCCCACGAA
AGTCTATGATGCGTCACATAGGGAGGATATATACATGTATAAATAGTGCA
GTTTGAAACCGAGTAAAGACATCATCCAGTCAATATCGAAGAAGGAATTC
AATTCAAGATgaactttttcatgttttcattaGCCTTTTTGGTAACTTTA
AACgtTATTGGAATAGCCCTAGGTGAATACCCACCAGCGGTAGGACAAAA
AGCAGGAGAAGATCCTTGCAAATATCATTATAAATATTGTAATGGAGTTG
ATTCTGGGCAATACGAAACTTACGACGCTCACGTTGCTGTTCAATGTGGT
GCTAATTACCAATTAGAATATTGTTATTATTGTCCTTATGGTGAACAGAT
CAAGCTTATATCATCAACTGAAAACCCAATCTGTCTACCTGGCTATACCA
CATATACCGCACACATAGAAGAAGTCCACTATAAATATTGTAAAAACAAA
TACTGCGAAGGTAAAAGTAAAGGCCGATATACAATTGACAACAGCTATCT
TGCACCATTCATTATTGAATGTGAAGGGAATTGCCGAGCCAAACATTGTT
ATTTTTGTAAAGGGGAAGATGAAATTAGTGATCCTGCTGTCAATCCTGAA
AAACCACCGACATGTAATGCTCCTCAAACATTCGGCGATTTCATTTAAAT
AAAGGTGTGGTATATACGTAATTTGAGGTGATGATGGCACAACCgtatta
tcaatttttttttacaaaggaatcttttttaattcaaacctTTATTACTC
GAAGGTCTCCtttttcttaactcgaacaaattttgtTGTCCCCTTAATGA
CGATACGTTATAA Run BLAST on NCBI protein sequence of TCONS_00029355-protein >TCONS_00029355-protein ID=TCONS_00029355-protein|Name=TCONS_00029355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MNFFMFSLAFLVTLNVIGIALGEYPPAVGQKAGEDPCKYHYKYCNGVDSG
QYETYDAHVAVQCGANYQLEYCYYCPYGEQIKLISSTENPICLPGYTTYT
AHIEEVHYKYCKNKYCEGKSKGRYTIDNSYLAPFIIECEGNCRAKHCYFC
KGEDEISDPAVNPEKPPTCNAPQTFGDFI Run BLAST on NCBI transcript from alignment at sc0000744:69211..70997+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029355 ID=TCONS_00029355|Name=TCONS_00029355|organism=Clytia hemisphaerica|type=transcript|length=1787bp|location=Sequence derived from alignment at sc0000744:69211..70997+ (Clytia hemisphaerica)
CCGGACACACCAGAAGAAAGTGATACAAGCTACACTCCGGCGTTTTTGTA
GACATCTACAATTCAGTCTAGCTTTGACGCGGATGGTTCCCGCCCACGAA
AGTCTATGATGCGTCACATAGGGAGGATATATACATGTATAAATAGTGCA
GTTTGAAACCGAGTAAAGACATCATCCAGTCAATATCGAAGAAGGAATTC
AATTCAAGATgaactttttcatgttttcattaGCCTTTTTGGTAACTTTA
AACggtgagatttttttcaaactttatagCTTATAAGTTAATCGAAGGTA
GATTTCAGTTTCTCCAATAAGGAAGTACTGTGAGCTTTACATGCATTAAA
TAGTGTACAAAGAGTGATGTTTCGCCATAACGGTTTTTAAAAAGTCAAGA
CGTGTGACTATATGAGGTACGGCTATTATTTTACATAAGAATGAGAGTGT
ACGTATTTAATTTGCGCTTTCAAGAACGGTGGAGGGATTGGAAGCGATAA
ATgttctttttactttgaaaaaatgtggtcgggCCCAAGGCCCGGGTGCT
TCCCCCGGATGCCGCGGCCTCTGCAACTTTAGGACTTATACaatttattc
ttcttttttagtTATTGGAATAGCCCTAGGTGAATACCCACCAGCGGTAG
GACAAAAAGCAGGAGAAGATCCTTGCAAATATCATTATAAATATTGTAAT
GGAGTTGATTCTGGGCAATACGAAACTTACGACGCTCACGTTGCTGTTCA
ATGTGGTGCTAATTACCAATTAGAATATTGTTATTATTGTCCTTATGGTG
AACAGATCAAGCTTATATCATCAACTGAAAACCCAATCTGTCTACCTGGC
TATACCACATATACCGCACACATAGAAGAAGTCCACTATAAATATTGTAA
AAACAAATACTGCGAAGGTAAAAGTAAAGGCCGATATACAATTGACAACA
GCTATCTTGCACCATTCATTATTGAATGTGAAGGGAATTGCCGAGCCAAA
CATTGTTATTTTTGTAAAGGGGAAGATGAAATTAGTGATCCTGCTGTCAA
TCCTGAAAAACCACCGACATGTAATGCTCCTCAAACATTCGGCGATTTCA
TTTAAATAAAGGTAGTTATATTTATATAACTGTTTAGGGCGATTTTCACT
TTTATGTGACCTGAGATCAGATCGAcattgttttctgcacaccacacTAA
AAGTTtgaagggatgtgtgaaaagaAGCGATCTGACAAATAAGTTATCTC
GAATTTGTTAAGACTGTGCTACACTAAAATGGGAATGCCAACAAAGTAGG
AATTGCGTTAAAAATTATAACAATATGTTATCAAGttcatctttataaga
acaaacaatataagaacataaggcttaggtagccaaaatattaagaacaa
attaagaacctTTCAAGGCTTTATGGTATCATGAAcatacccaatttctt
agaaaattgcataaaaatactcacaaaatagtgataatattttcaggctt
taaactcaaaaagttgagaacatccgaaatcttcaaaaatgcTATATACC
CTCCTATATATATCCCTATATGCCCATCATCCCATCAAGGATATCGAATA
ATTACGAATTTTTGTATTTCCCTCATAGGTGTGGTATATACGTAATTTGA
GGTGATGATGGCACAACCgtattatcaatttttttttacaaaggaatctt
ttttaattcaaacctTTATTACTCGAAGGTCTCCtttttcttaactcgaa
caaattttgtTGTCCCCTTAATGACGATACGTTATAA Coding sequence (CDS) from alignment at sc0000744:69211..70997+ >TCONS_00029355 ID=TCONS_00029355|Name=TCONS_00029355|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0000744:69211..70997+ (Clytia hemisphaerica)
ATgaactttttcatgttttcattaGCCTTTTTGGTAACTTTAAACgtTAT
TGGAATAGCCCTAGGTGAATACCCACCAGCGGTAGGACAAAAAGCAGGAG
AAGATCCTTGCAAATATCATTATAAATATTGTAATGGAGTTGATTCTGGG
CAATACGAAACTTACGACGCTCACGTTGCTGTTCAATGTGGTGCTAATTA
CCAATTAGAATATTGTTATTATTGTCCTTATGGTGAACAGATCAAGCTTA
TATCATCAACTGAAAACCCAATCTGTCTACCTGGCTATACCACATATACC
GCACACATAGAAGAAGTCCACTATAAATATTGTAAAAACAAATACTGCGA
AGGTAAAAGTAAAGGCCGATATACAATTGACAACAGCTATCTTGCACCAT
TCATTATTGAATGTGAAGGGAATTGCCGAGCCAAACATTGTTATTTTTGT
AAAGGGGAAGATGAAATTAGTGATCCTGCTGTCAATCCTGAAAAACCACC
GACATGTAATGCTCCTCAAACATTCGGCGATTTCATTTAAATgaactttt
tcatgttttcattaGCCTTTTTGGTAACTTTAAACgtTATTGGAATAGCC
CTAGGTGAATACCCACCAGCGGTAGGACAAAAAGCAGGAGAAGATCCTTG
CAAATATCATTATAAATATTGTAATGGAGTTGATTCTGGGCAATACGAAA
CTTACGACGCTCACGTTGCTGTTCAATGTGGTGCTAATTACCAATTAGAA
TATTGTTATTATTGTCCTTATGGTGAACAGATCAAGCTTATATCATCAAC
TGAAAACCCAATCTGTCTACCTGGCTATACCACATATACCGCACACATAG
AAGAAGTCCACTATAAATATTGTAAAAACAAATACTGCGAAGGTAAAAGT
AAAGGCCGATATACAATTGACAACAGCTATCTTGCACCATTCATTATTGA
ATGTGAAGGGAATTGCCGAGCCAAACATTGTTATTTTTGTAAAGGGGAAG
ATGAAATTAGTGATCCTGCTGTCAATCCTGAAAAACCACCGACATGTAAT
GCTCCTCAAACATTCGGCGATTTCATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029355-exon-sc0000744-1491911889:69211..69464 | TCONS_00029355-exon-sc0000744-1491911889:69211..69464 | Clytia hemisphaerica | exon |
| TCONS_00029355-exon-sc0000744-1510915933:69211..69464 | TCONS_00029355-exon-sc0000744-1510915933:69211..69464 | Clytia hemisphaerica | exon |
| TCONS_00029355-exon-sc0000744-1575043694:69211..69464 | TCONS_00029355-exon-sc0000744-1575043694:69211..69464 | Clytia hemisphaerica | exon |
| TCONS_00029355-exon-sc0000744-1491911889:69822..70321 | TCONS_00029355-exon-sc0000744-1491911889:69822..70321 | Clytia hemisphaerica | exon |
| TCONS_00029355-exon-sc0000744-1510915933:69822..70321 | TCONS_00029355-exon-sc0000744-1510915933:69822..70321 | Clytia hemisphaerica | exon |
| TCONS_00029355-exon-sc0000744-1575043694:69822..70321 | TCONS_00029355-exon-sc0000744-1575043694:69822..70321 | Clytia hemisphaerica | exon |
| TCONS_00029355-exon-sc0000744-1491911889:70839..70997 | TCONS_00029355-exon-sc0000744-1491911889:70839..70997 | Clytia hemisphaerica | exon |
| TCONS_00029355-exon-sc0000744-1510915933:70839..70997 | TCONS_00029355-exon-sc0000744-1510915933:70839..70997 | Clytia hemisphaerica | exon |
| TCONS_00029355-exon-sc0000744-1575043694:70839..70997 | TCONS_00029355-exon-sc0000744-1575043694:70839..70997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000744 | supercontig | sc0000744:69211..70997 + |
Blast
The following BLAST results are available for this feature:
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