|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029354 ID=TCONS_00029354|Name=TCONS_00029354|organism=Clytia hemisphaerica|type=transcript|length=2852bp
tataattttttctaggtCACCCAGTATTATGAATACTTTTTAATATATGA
CCATATTGTGGAACCGTtgtaaatttttcttccttATTGATAGACAATTT
GTCAAAGAGGCCACCTTGTTGAAAAATTAAGTAGTAATAATTATACCAtt
gctatatcattgtttttctgctggactacttaaaattattcaacagggtg
gacTCAATGACAAATGGTCTATTATGTTATAGCATATCATTGACTGCACC
ATCTCAACCACGTCAGCACTGTTTGATACAACAGTTAATCTTTGTATGGA
CATAGTGAAAAAACAAAGTCTTGACGGACAAGAAGATACATATCAAGCAA
TTTGTGAAGAAAGTAATGAAATCATCAACCCTTTCACTGGCGTCAATACC
AAGTATCTCCAAGACAAATACCTTGATGAAATCATCCACCTCAAACCAGT
CGAAATGTCCCTGGGGAAGTCTTTCAGATACAAGAGGAAGCGAAATGGTG
AGAAGGTTCTACAAGAGTGTGATGACACGTTTGCTTTCATTTCCGTACTT
GACACCCTAGCTGAAATGCTCTCTGATGACAATCTTGCCAAAGAGCTTCT
GAAACCAGTTAAAAAAAAGACAGCTGAAGGAGTTTATTATGATATCCCAG
ACGGAGATTTCCTTGCTGACAGAGAAGTTGACCGAGATAATCCATACttt
tatattttggtttttcaaGATGGCTTGGAAATGTGCAACCCATTGGGAAA
TCGTAAAGGAAAACACAACCTTGTCAAGTTTTACTGGACACTAGTCAAGT
TTTACTAGACACTATTAAATCTTTCTCCAAGACTTCGCTCAAAGTTATCA
ACNTTAAATCTTTCTCCAAGACTACGCTCAAAGTTATCAGCCATACGTCT
TTTTGCCTCGATTAAGAAGACTCTCCTTTCTGAATATGGTTTTGACTCTG
TTTTAAAACCCTTTTTAGAAGAAATGAACAGTCTTTATAATGGGGTGAAT
TTTATGATCAAGGGAGAACCTGTTAAATGTTTTGGGAGAGTGATTTTATG
CCTTGGTGACACAGAAGGCCAACAACAAATCAGTGGGTTTAAAATTGGTG
TTGGGTTTTCACTGAGAAAATGCAGATTTTGTTTTGCCACTCAAGGAGAT
GTCAGGAACAATTTTGACCGAGATTCTTTTCAGGAGAGAGATCTTACGTC
TCATCTTGAGTATTGTAATGATATCGAAAATGCTACAACTCGAAAAGCTC
GTGACACCTTAAGCACAGAGCACGGGATAAATTGTTTGTCCAGTTTGCAT
GTTCTACCAGATTTCGATGTAACGAAGCAATTCCCTCACGACATCATGCA
TGTAATGCTAGAGGGCGTAGTACCATACGAATGTCAACGAGCTCTAAGTG
CCTTGATGGATCAGGGGCTGTTTACAATTGGCGAATTTAATGCTCAATTG
GATAAATTCAATTTTACAGCAACTGATCTTCGCAGCAAACCAGAGGGTTT
GAAACCGTCAGTTTTCGTCACTGGCGAGAGAAATCTTAAGTATAGTGCTG
AAAACTCTCGCATATTCATCAAAGTACTTCCTTTTATTTTGGAGCAATTC
GTCCACGAAGAAGACCCATTCCTGCTATTTCTTTTAGAACTTTCTTCAAT
AGTCAGCACTGTATACTCTCCAGTTATGAATGACGGCGCCATTATTCTAT
TGGAGCAATTAACCTCAGAACACTACAAACAGTTCAACCAGCTTTTCCCA
GATAGCCACCTTATTCCCAAGCATCATTATCTTTTGGAAATTCCAAGATA
CATTTTCCAATTTGGTCCTCCTGTACGGTATTGCTGCATGCGGTTTGAGG
CACTCCACAAAAGATTCAAATCTTTTGCTCCTGTTGCGAGCTTTCAGAAC
TTGCCAATGTCGTTGGCAAACAGATACGTACGATACGAATATATGCTGCA
AGATGGACCAGAACATTCTATTCTATCTTCTTCTCGAATCGATGGTCCGG
GAAAGAAGCTCGACAAAAAGGACGTTAATTTCTTTCGCCGTTCGTTTCCA
GATTTACCGCGGTGTAAGTCAATCTATTCCCTAAAGTGGTTGACCTTTTA
TGGTAATAATTTCGTGATAGACAAAAGCATCGTGGCTGTTGGGGCAGTTA
GGGAATCGCTTTTGCCCATATTTGGAAAATTAAATAGAATCCCTTTATGC
GGGAgaaagataatatttttggtTGATCAACTGGAAACATTATATTTTGA
TAAACAGTTCAACGGATACTCTGTCTCAGAAACGAAAGACCAATCGATCT
GGCAAATAAATCGGTTACTTGATTTCAACATATATCAAGTTGTCAAAACT
ATTCGTGAGAAAAAACTAATCGTCCCTCTTAAATACGATTTATCTACAAT
CATTGAAGAACACCTAAAAGGAAGAAATCCCATGCACGAATAAATTGTTC
AATGAcatgatttttataagaaaccataccttttctttttattcttttcg
tATGTAGAAATATTTGCAAATTTGAAGAGAATATGCTGATTTTGATTTTA
CACTTCTCTGTTTTCATGTCTTTAGTTNGTGAGAAAAAACTAATCGTCCC
TCTTAAATACGATTTATCTACAATCATTGAAGAACACCTAAAAGGAAGAA
ATCCCATGCACGAATAAATCGTTCAATGAcatgatttttataagaaccca
TACCTTTCCTTTTTATTCTTTTCGTATGTAGAAATATTTGCAAATTTGAA
GAGAATATGCTGATTTTGATTTTACACTTCTCTGTTTTCATGTCTTTAGT
TAGAAAACTGTAGATTTCTTTCACGGTTCGAGAAACATTAATTAAACTGA
AA Run BLAST on NCBI transcript from alignment at sc0000744:46896..50040+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029354 ID=TCONS_00029354|Name=TCONS_00029354|organism=Clytia hemisphaerica|type=transcript|length=3145bp|location=Sequence derived from alignment at sc0000744:46896..50040+ (Clytia hemisphaerica)
tataattttttctaggtCACCCAGTATTATGAATACTTTTTAATATATGA
CCATATTGTGGAACCGTtgtaaatttttcttccttATTGATAGACAATTT
GTCAAAGAGGCCACCTTGTTGAAAAATTAAGTAGTAATAATTATACCAtt
gctatatcattgtttttctgctggactacttaaaattattcaacagggtg
gacTCAATGACAAATGGTCTATTATGTTATAGCATATCATTGACTGCACC
ATCTCAACCACGTCAGCACTGTTTGATACAACAGTTAATCTTTGTATGGA
CATAGTGAAAAAACAAAGTCTTGACGGACAAGAAGATACATATCAAGCAA
TTTGTGAAGAAAGTAATGAAATCATCAACCCTTTCACTGGCGTCAATACC
AAGTATCTCCAAGACAAATACCTTGATGAAATCATCCACCTCAAACCAGT
CGAAATGTCCCTGGGGAAGTCTTTCAGATACAAGAGGAAGCGAAATGGTG
AGAAGGTTCTACAAGAGTGTGATGACACGTTTGCTTTCATTTCCGTACTT
GACACCCTAGCTGAAATGCTCTCTGATGACAATCTTGCCAAAGAGCTTCT
GAAACCAGTTAAAAAAAAGACAGCTGAAGGTAATTATTGTATTGTTTGTA
TGTCGAAATCTCTCTTTCAAAGTTTTAGCATAGTGCGTGTTTTTTTATGT
TTGGTATTTGTAACTGCTTACATTCCAATGAATTAAACTAAACTGGTTTT
CTTTCGTCAATCTTTTGGTTTGCAGTTTGTATAACTTATTCTCTGATGAG
CTACCTGCGTCAAAGAGGCCCCCAGCAGTTTGTGTGATGgtgtgattggg
acttttttcttggttgcttataaaaaatgtgtattagaAATTTCCAAACC
TTTTTTCAAACGTTTTTTTCAGGAGTTTATTATGATATCCCAGACGGAGA
TTTCCTTGCTGACAGAGAAGTTGACCGAGATAATCCATACttttatattt
tggtttttcaaGATGGCTTGGAAATGTGCAACCCATTGGGAAATCGTAAA
GGAAAACACAACCTTGTCAAGTTTTACTGGACACTAGTCAAGTTTTACTA
GACACTATTAAATCTTTCTCCAAGACTTCGCTCAAAGTTATCAACNTTAA
ATCTTTCTCCAAGACTACGCTCAAAGTTATCAGCCATACGTCTTTTTGCC
TCGATTAAGAAGACTCTCCTTTCTGAATATGGTTTTGACTCTGTTTTAAA
ACCCTTTTTAGAAGAAATGAACAGTCTTTATAATGGGGTGAATTTTATGA
TCAAGGGAGAACCTGTTAAATGTTTTGGGAGAGTGATTTTATGCCTTGGT
GACACAGAAGGCCAACAACAAATCAGTGGGTTTAAAATTGGTGTTGGGTT
TTCACTGAGAAAATGCAGATTTTGTTTTGCCACTCAAGGAGATGTCAGGA
ACAATTTTGACCGAGATTCTTTTCAGGAGAGAGATCTTACGTCTCATCTT
GAGTATTGTAATGATATCGAAAATGCTACAACTCGAAAAGCTCGTGACAC
CTTAAGCACAGAGCACGGGATAAATTGTTTGTCCAGTTTGCATGTTCTAC
CAGATTTCGATGTAACGAAGCAATTCCCTCACGACATCATGCATGTAATG
CTAGAGGGCGTAGTACCATACGAATGTCAACGAGCTCTAAGTGCCTTGAT
GGATCAGGGGCTGTTTACAATTGGCGAATTTAATGCTCAATTGGATAAAT
TCAATTTTACAGCAACTGATCTTCGCAGCAAACCAGAGGGTTTGAAACCG
TCAGTTTTCGTCACTGGCGAGAGAAATCTTAAGTATAGTGCTGAAAACTC
TCGCATATTCATCAAAGTACTTCCTTTTATTTTGGAGCAATTCGTCCACG
AAGAAGACCCATTCCTGCTATTTCTTTTAGAACTTTCTTCAATAGTCAGC
ACTGTATACTCTCCAGTTATGAATGACGGCGCCATTATTCTATTGGAGCA
ATTAACCTCAGAACACTACAAACAGTTCAACCAGCTTTTCCCAGATAGCC
ACCTTATTCCCAAGCATCATTATCTTTTGGAAATTCCAAGATACATTTTC
CAATTTGGTCCTCCTGTACGGTATTGCTGCATGCGGTTTGAGGCACTCCA
CAAAAGATTCAAATCTTTTGCTCCTGTTGCGAGCTTTCAGAACTTGCCAA
TGTCGTTGGCAAACAGATACGTACGATACGAATATATGCTGCAAGATGGA
CCAGAACATTCTATTCTATCTTCTTCTCGAATCGATGGTCCGGGAAAGAA
GCTCGACAAAAAGGACGTTAATTTCTTTCGCCGTTCGTTTCCAGATTTAC
CGCGGTGTAAGTCAATCTATTCCCTAAAGTGGTTGACCTTTTATGGTAAT
AATTTCGTGATAGACAAAAGCATCGTGGCTGTTGGGGCAGTTAGGGAATC
GCTTTTGCCCATATTTGGAAAATTAAATAGAATCCCTTTATGCGGGAgaa
agataatatttttggtTGATCAACTGGAAACATTATATTTTGATAAACAG
TTCAACGGATACTCTGTCTCAGAAACGAAAGACCAATCGATCTGGCAAAT
AAATCGGTTACTTGATTTCAACATATATCAAGTTGTCAAAACTATTCGTG
AGAAAAAACTAATCGTCCCTCTTAAATACGATTTATCTACAATCATTGAA
GAACACCTAAAAGGAAGAAATCCCATGCACGAATAAATTGTTCAATGAca
tgatttttataagaaaccataccttttctttttattcttttcgtATGTAG
AAATATTTGCAAATTTGAAGAGAATATGCTGATTTTGATTTTACACTTCT
CTGTTTTCATGTCTTTAGTTNGTGAGAAAAAACTAATCGTCCCTCTTAAA
TACGATTTATCTACAATCATTGAAGAACACCTAAAAGGAAGAAATCCCAT
GCACGAATAAATCGTTCAATGAcatgatttttataagaacccaTACCTTT
CCTTTTTATTCTTTTCGTATGTAGAAATATTTGCAAATTTGAAGAGAATA
TGCTGATTTTGATTTTACACTTCTCTGTTTTCATGTCTTTAGTTAGAAAA
CTGTAGATTTCTTTCACGGTTCGAGAAACATTAATTAAACTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029354-exon-sc0000744-1491911889:46896..47524 | TCONS_00029354-exon-sc0000744-1491911889:46896..47524 | Clytia hemisphaerica | exon |
| TCONS_00029354-exon-sc0000744-1510915933:46896..47524 | TCONS_00029354-exon-sc0000744-1510915933:46896..47524 | Clytia hemisphaerica | exon |
| TCONS_00029354-exon-sc0000744-1575043694:46896..47524 | TCONS_00029354-exon-sc0000744-1575043694:46896..47524 | Clytia hemisphaerica | exon |
| TCONS_00029354-exon-sc0000744-1491911889:47818..50040 | TCONS_00029354-exon-sc0000744-1491911889:47818..50040 | Clytia hemisphaerica | exon |
| TCONS_00029354-exon-sc0000744-1510915933:47818..50040 | TCONS_00029354-exon-sc0000744-1510915933:47818..50040 | Clytia hemisphaerica | exon |
| TCONS_00029354-exon-sc0000744-1575043694:47818..50040 | TCONS_00029354-exon-sc0000744-1575043694:47818..50040 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000744 | supercontig | sc0000744:46896..50040 + |
Blast
The following BLAST results are available for this feature:
|
