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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029352 ID=TCONS_00029352|Name=TCONS_00029352|organism=Clytia hemisphaerica|type=transcript|length=4060bp
taaaaaaacctgaaattaattcatcttttgattttgagaccgaaaaatcc
aaaatggcatcacttttcaagaaaaaactgTCTTGATTTAAAGGTAAAAT
GCTTGATGATGGTACATTAGTATAAGAAAAAACTCACCAATTTGACACTG
ACAGTTAAAAAGTTGAATGATATGAATATGTGTAGAGACGTGTAGAGTTT
TGTgaacaaaattatcaaaatatctcaaatatctAGTTGAAGTTAAGTTG
TACTTAAAATCTTatgttgaaaaatgaaatggaaAAGGAAATGTGGTGGC
TACAAGCAGGTTTTATAGCATTTTTCCCGccattttcatgaaataaatta
ggtaaaaataaagttttggctGTCTTGAACCACTGCTGACCACTTTTATA
AGAAATGGATAAAACTTAGATAGAGGTTTTCTAGGAGAATCAAGGTCAGA
AAATTACAGAAAATGATACAGAATCGATGATCAAAgagtaaaaaagaaat
taaacttATCTTTGAAGAACACAAATGATTATCATTCAAGGAAATCCACC
AAACTTCAGTGATCATATTCCATTTTCTCCTCTTCTTTCTTCGCCATCTT
GGTTTGAGCGCCAAACCGCTGAGTCTCTTGATCTTTATTTCATTCAAAAC
CGCTGAAATCGCTCTCCTTCGTTCTTTCGATTTCACATGGTTTAGATATT
TGCGGAAAATACGAAAATCCTCTAGGAAGGAGACTATTCGATCATAATGG
CAGCCGGAGCTTTGATTCAAACAGGGCAGCGTTTTTGGACTGTAAAATCT
GGCCAGCAGACAGGCAGAACGAATACTTATGCCGCTGTGCTGTCATAAAT
TATTATGTTATTGTTCCAATCGATGTTGGTGTCACTGTATTGGTACGAGG
TGTAAGTATCGAGATTTTTAACTCCAGTTATAATTTCCAGAGACTTGTAT
ATTATGTGAATGAAAAAATGTTTGCAGGACATAGATAAAAACTCTTCAAT
TCAGAGCAGGTTTTATTTTACATCATCAAGATACAGATGTGGCAATGTGA
ACTATGCAAGCACTTCTTAAGCACTTCATTGAAGGGTCTTTTAAGTCATT
TAAATCTTATCCATGGAATAGATAAAAACTTTACTTGCTTGTGTCCTGTT
GAAGATTGTTTTCGTAAATTCATTAAATATGATACATTGTACCGCCATGT
CCGCAAAGATCATAAAGCCATTCTTGGCTTGCTAGAGAGAGCAACAGTAG
ATGAGAATGAGACAGGTCCAAATGATGCTAATAACACAGAACATGaagac
aataataataatacagcAAGTGACGACGATGACGATGAAGAAGAGTTCCA
AGAAGAGAGAAAGAGTCAAATTTTCATCAATTGTTAGAGCTGCAAACAAG
AAAACTGATACTCCTACTCAAAAGCCACAAAATTCCACAGCATATCATTG
ACTGCACCATCTCAACCACGTCAGCACTGTTTGATACAACAGTTAATCTT
TGTATGGACATAGTGAAAAAACAAAGTCTTGACGGACAAGAAGATACATA
TCAAGCAATTTGTGAAGAAAGTAATGAAATCATCAACCCTTTCACTGGCG
TCAATACCAAGTATCTCCAAGACAAATACCTTGATGAAATCATCCACCTC
AAACCAGTCGAAATGTCCCTGGGGAAGTCTTTCAGATACAAGAGGAAGCG
AAATGGTGAGAAGGTTCTACAAGAGTGTGATGACACGTTTGCTTTCATTT
CCGTACTTGACACCCTAGCTGAAATGCTCTCTGATGACAATCTTGCCAAA
GAGCTTCTGAAACCAGTTAAAAAAAAGACAGCTGAAGGAGTTTATTATGA
TATCCCAGACGGAGATTTCCTTGCTGACAGAGAAGTTGACCGAGATAATC
CATACttttatattttggtttttcaaGATGGCTTGGAAATGTGCAACCCA
TTGGGAAATCGTAAAGGAAAACACAACCTTGTCAAGTTTTACTGGACACT
AGTCAAGTTTTACTAGACACTATTAAATCTTTCTCCAAGACTTCGCTCAA
AGTTATCAACNTTAAATCTTTCTCCAAGACTACGCTCAAAGTTATCAGCC
ATACGTCTTTTTGCCTCGATTAAGAAGACTCTCCTTTCTGAATATGGTTT
TGACTCTGTTTTAAAACCCTTTTTAGAAGAAATGAACAGTCTTTATAATG
GGGTGAATTTTATGATCAAGGGAGAACCTGTTAAATGTTTTGGGAGAGTG
ATTTTATGCCTTGGTGACACAGAAGGCCAACAACAAATCAGTGGGTTTAA
AATTGGTGTTGGGTTTTCACTGAGAAAATGCAGATTTTGTTTTGCCACTC
AAGGAGATGTCAGGAACAATTTTGACCGAGATTCTTTTCAGGAGAGAGAT
CTTACGTCTCATCTTGAGTATTGTAATGATATCGAAAATGCTACAACTCG
AAAAGCTCGTGACACCTTAAGCACAGAGCACGGGATAAATTGTTTGTCCA
GTTTGCATGTTCTACCAGATTTCGATGTAACGAAGCAATTCCCTCACGAC
ATCATGCATGTAATGCTAGAGGGCGTAGTACCATACGAATGTCAACGAGC
TCTAAGTGCCTTGATGGATCAGGGGCTGTTTACAATTGGCGAATTTAATG
CTCAATTGGATAAATTCAATTTTACAGCAACTGATCTTCGCAGCAAACCA
GAGGGTTTGAAACCGTCAGTTTTCGTCACTGGCGAGAGAAATCTTAAGTA
TAGTGCTGAAAACTCTCGCATATTCATCAAAGTACTTCCTTTTATTTTGG
AGCAATTCGTCCACGAAGAAGACCCATTCCTGCTATTTCTTTTAGAACTT
TCTTCAATAGTCAGCACTGTATACTCTCCAGTTATGAATGACGGCGCCAT
TATTCTATTGGAGCAATTAACCTCAGAACACTACAAACAGTTCAACCAGC
TTTTCCCAGATAGCCACCTTATTCCCAAGCATCATTATCTTTTGGAAATT
CCAAGATACATTTTCCAATTTGGTCCTCCTGTACGGTATTGCTGCATGCG
GTTTGAGGCACTCCACAAAAGATTCAAATCTTTTGCTCCTGTTGCGAGCT
TTCAGAACTTGCCAATGTCGTTGGCAAACAGATACGTACGATACGAATAT
ATGCTGCAAGATGGACCAGAACATTCTATTCTATCTTCTTCTCGAATCGA
TGGTCCGGGAAAGAAGCTCGACAAAAAGGACGTTAATTTCTTTCGCCGTT
CGTTTCCAGATTTACCGCGGTGTAAGTCAATCTATTCCCTAAAGTGGTTG
ACCTTTTATGGTAATAATTTCGTGATAGACAAAAGCATCGTGGCTGTTGG
GGCAGTTAGGGAATCGCTTTTGCCCATATTTGGAAAATTAAATAGAATCC
CTTTATGCGGGAgaaagataatatttttggtTGATCAACTGGAAACATTA
TATTTTGATAAACAGTTCAACGGATACTCTGTCTCAGAAACGAAAGACCA
ATCGATCTGGCAAATAAATCGGTTACTTGATTTCAACATATATCAAGTTG
TCAAAACTATTCGTGAGAAAAAACTAATCGTCCCTCTTAAATACGATTTA
TCTACAATCATTGAAGAACACCTAAAAGGAAGAAATCCCATGCACGAATA
AATTGTTCAATGAcatgatttttataagaaaccataccttttctttttat
tcttttcgtATGTAGAAATATTTGCAAATTTGAAGAGAATATGCTGATTT
TGATTTTACACTTCTCTGTTTTCATGTCTTTAGTTNGTGAGAAAAAACTA
ATCGTCCCTCTTAAATACGATTTATCTACAATCATTGAAGAACACCTAAA
AGGAAGAAATCCCATGCACGAATAAATCGTTCAATGAcatgatttttata
agaacccaTACCTTTCCTTTTTATTCTTTTCGTATGTAGAAATATTTGCA
AATTTGAAGAGAATATGCTGATTTTGATTTTACACTTCTCTGTTTTCATG
TCTTTAGTTAGAAAACTGTAGATTTCTTTCACGGTTCGAGAAACATTAAT
TAAACTGAAA Run BLAST on NCBI transcript from alignment at sc0000744:44837..50040+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029352 ID=TCONS_00029352|Name=TCONS_00029352|organism=Clytia hemisphaerica|type=transcript|length=5204bp|location=Sequence derived from alignment at sc0000744:44837..50040+ (Clytia hemisphaerica)
taaaaaaacctgaaattaattcatcttttgattttgagaccgaaaaatcc
aaaatggcatcacttttcaagaaaaaactgTCTTGATTTAAAGGTAAAAT
GCTTGATGATGGTACATTAGTATAAGAAAAAACTCACCAATTTGACACTG
ACAGTTAAAAAGTTGAATGATATGAATATGTGTAGAGACGTGTAGAGTTT
TGTgaacaaaattatcaaaatatctcaaatatctAGTTGAAGTTAAGTTG
TACTTAAAATCTTatgttgaaaaatgaaatggaaAAGGAAATGTGGTGGC
TACAAGCAGGTTTTATAGCATTTTTCCCGccattttcatgaaataaatta
ggtaaaaataaagttttggctGTCTTGAACCACTGCTGACCACTTTTATA
AGAAATGGATAAAACTTAGATAGAGGTTTTCTAGGAGAATCAAGGTCAGA
AAATTACAGAAAATGATACAGAATCGATGATCAAAgagtaaaaaagaaat
taaacttATCTTTGAAGAACACAAATGATTATCATTCAAGGAAATCCACC
AAACTTCAGTGATCATATTCCATTTTCTCCTCTTCTTTCTTCGCCATCTT
GGTTTGAGCGCCAAACCGCTGAGTCTCTTGATCTTTATTTCATTCAAAAC
CGCTGAAATCGCTCTCCTTCGTTCTTTCGATTTCACATGGTTTAGATATT
TGCGGAAAATACGAAAATCCTCTAGGAAGGAGACTATTCGATCATAATGG
CAGCCGGAGCTTTGATTCAAACAGGGCAGCGTTTTTGGACTGTAAAATCT
GGCCAGCAGACAGGCAGAACGAATACTTATGCCGCTGTGCTGTCATAAAT
TATTATGTTATTGTTCCAATCGATGTTGGTGTCACTGTATTGGTACGAGG
TGTAAGTATCGAGATTTTTAACTCCAGTTATAATTTCCAGAGACTTGTAT
ATTATGTGAATGAAAAAATGTTTGCAGGACATAGATAAAAACTCTTCAAT
TCAGAGCAGGTTTTATTTTACATCATCAAGATACAGATGTGGCAATGTGA
ACTATGCAAGCACTTCTTAAGCACTTCATTGAAGGGTCTTTTAAGTCATT
TAAATCTTATCCATGGAATAGATAAAAACTTTACTTGCTTGTGTCCTGTT
GAAGATTGTTTTCGTAAATTCATTAAATATGATACATTGTACCGCCATGT
CCGCAAAGATCATAAAGCCATTCTTGGCTTGCTAGAGAGAGCAACAGTAG
ATGAGAATGAGACAGGTCCAAATGATGCTAATAACACAGAACATGaagac
aataataataatacagcAAGTGACGACGATGACGATGAAGAAGAGTTCCA
AGAAGAGGTATAGCGCTTAATTCTCTTTTATTGTTGCAGACATTTCAgga
aaatcgcgaaattttcttacatttaaagtattttttgaaGACTACTTACA
TTTATacattattattttcttttgtcCTTCTCAAGGACATGTATTTTGAA
CTAAGGAAGATTTATGTCTTTTATTGTCCTTTCCAAGGCAAAATGAGTAG
CTGTATTTTGAAAGAAGATTATTTCTTCTGTCCTTTCGCGGCCCTGCTGC
ATACCTGGGGTTAGTTTACAGTGCAAAATTGTTCAGGCGCTcattatttt
gaccatttcatTCAGGTTCATTATCATATTTTAAAGGCTTCTTTTCAAGT
TTCCATATAATTCACAGTAAAACCATTCATTACCTTATAGAAAGAGTCAA
ATTTTCATCAATTGTTAGAGCTGCAAACAAGAAAACTGATACTCCTACTC
AAAAGCCACAAAATTCCACAGGTAAGACACATTCATTTTTCTTACATATT
TTGATTCTTGATATATAATTCATCTAAAACATTATCCACTATGATAGAgg
tctctctctctctctctctctctacaGTTTTCGACTGaaccaaattttaa
aaatttaaacaatgtATGTCATCTTTCCTTTACCTTTCCTCtttacaatg
aaaaaaacaattagTAAAAATTCTCATTATTTTGGACACAGTACAAGCCA
TCAAACCCttataattttttctaggtCACCCAGTATTATGAATACTTTTT
AATATATGACCATATTGTGGAACCGTtgtaaatttttcttccttATTGAT
AGACAATTTGTCAAAGAGGCCACCTTGTTGAAAAATTAAGTAGTAATAAT
TATACCAttgctatatcattgtttttctgctggactacttaaaattattc
aacagggtggacTCAATGACAAATGGTCTATTATGTTATAGCATATCATT
GACTGCACCATCTCAACCACGTCAGCACTGTTTGATACAACAGTTAATCT
TTGTATGGACATAGTGAAAAAACAAAGTCTTGACGGACAAGAAGATACAT
ATCAAGCAATTTGTGAAGAAAGTAATGAAATCATCAACCCTTTCACTGGC
GTCAATACCAAGTATCTCCAAGACAAATACCTTGATGAAATCATCCACCT
CAAACCAGTCGAAATGTCCCTGGGGAAGTCTTTCAGATACAAGAGGAAGC
GAAATGGTGAGAAGGTTCTACAAGAGTGTGATGACACGTTTGCTTTCATT
TCCGTACTTGACACCCTAGCTGAAATGCTCTCTGATGACAATCTTGCCAA
AGAGCTTCTGAAACCAGTTAAAAAAAAGACAGCTGAAGGTAATTATTGTA
TTGTTTGTATGTCGAAATCTCTCTTTCAAAGTTTTAGCATAGTGCGTGTT
TTTTTATGTTTGGTATTTGTAACTGCTTACATTCCAATGAATTAAACTAA
ACTGGTTTTCTTTCGTCAATCTTTTGGTTTGCAGTTTGTATAACTTATTC
TCTGATGAGCTACCTGCGTCAAAGAGGCCCCCAGCAGTTTGTGTGATGgt
gtgattgggacttttttcttggttgcttataaaaaatgtgtattagaAAT
TTCCAAACCTTTTTTCAAACGTTTTTTTCAGGAGTTTATTATGATATCCC
AGACGGAGATTTCCTTGCTGACAGAGAAGTTGACCGAGATAATCCATACt
tttatattttggtttttcaaGATGGCTTGGAAATGTGCAACCCATTGGGA
AATCGTAAAGGAAAACACAACCTTGTCAAGTTTTACTGGACACTAGTCAA
GTTTTACTAGACACTATTAAATCTTTCTCCAAGACTTCGCTCAAAGTTAT
CAACNTTAAATCTTTCTCCAAGACTACGCTCAAAGTTATCAGCCATACGT
CTTTTTGCCTCGATTAAGAAGACTCTCCTTTCTGAATATGGTTTTGACTC
TGTTTTAAAACCCTTTTTAGAAGAAATGAACAGTCTTTATAATGGGGTGA
ATTTTATGATCAAGGGAGAACCTGTTAAATGTTTTGGGAGAGTGATTTTA
TGCCTTGGTGACACAGAAGGCCAACAACAAATCAGTGGGTTTAAAATTGG
TGTTGGGTTTTCACTGAGAAAATGCAGATTTTGTTTTGCCACTCAAGGAG
ATGTCAGGAACAATTTTGACCGAGATTCTTTTCAGGAGAGAGATCTTACG
TCTCATCTTGAGTATTGTAATGATATCGAAAATGCTACAACTCGAAAAGC
TCGTGACACCTTAAGCACAGAGCACGGGATAAATTGTTTGTCCAGTTTGC
ATGTTCTACCAGATTTCGATGTAACGAAGCAATTCCCTCACGACATCATG
CATGTAATGCTAGAGGGCGTAGTACCATACGAATGTCAACGAGCTCTAAG
TGCCTTGATGGATCAGGGGCTGTTTACAATTGGCGAATTTAATGCTCAAT
TGGATAAATTCAATTTTACAGCAACTGATCTTCGCAGCAAACCAGAGGGT
TTGAAACCGTCAGTTTTCGTCACTGGCGAGAGAAATCTTAAGTATAGTGC
TGAAAACTCTCGCATATTCATCAAAGTACTTCCTTTTATTTTGGAGCAAT
TCGTCCACGAAGAAGACCCATTCCTGCTATTTCTTTTAGAACTTTCTTCA
ATAGTCAGCACTGTATACTCTCCAGTTATGAATGACGGCGCCATTATTCT
ATTGGAGCAATTAACCTCAGAACACTACAAACAGTTCAACCAGCTTTTCC
CAGATAGCCACCTTATTCCCAAGCATCATTATCTTTTGGAAATTCCAAGA
TACATTTTCCAATTTGGTCCTCCTGTACGGTATTGCTGCATGCGGTTTGA
GGCACTCCACAAAAGATTCAAATCTTTTGCTCCTGTTGCGAGCTTTCAGA
ACTTGCCAATGTCGTTGGCAAACAGATACGTACGATACGAATATATGCTG
CAAGATGGACCAGAACATTCTATTCTATCTTCTTCTCGAATCGATGGTCC
GGGAAAGAAGCTCGACAAAAAGGACGTTAATTTCTTTCGCCGTTCGTTTC
CAGATTTACCGCGGTGTAAGTCAATCTATTCCCTAAAGTGGTTGACCTTT
TATGGTAATAATTTCGTGATAGACAAAAGCATCGTGGCTGTTGGGGCAGT
TAGGGAATCGCTTTTGCCCATATTTGGAAAATTAAATAGAATCCCTTTAT
GCGGGAgaaagataatatttttggtTGATCAACTGGAAACATTATATTTT
GATAAACAGTTCAACGGATACTCTGTCTCAGAAACGAAAGACCAATCGAT
CTGGCAAATAAATCGGTTACTTGATTTCAACATATATCAAGTTGTCAAAA
CTATTCGTGAGAAAAAACTAATCGTCCCTCTTAAATACGATTTATCTACA
ATCATTGAAGAACACCTAAAAGGAAGAAATCCCATGCACGAATAAATTGT
TCAATGAcatgatttttataagaaaccataccttttctttttattctttt
cgtATGTAGAAATATTTGCAAATTTGAAGAGAATATGCTGATTTTGATTT
TACACTTCTCTGTTTTCATGTCTTTAGTTNGTGAGAAAAAACTAATCGTC
CCTCTTAAATACGATTTATCTACAATCATTGAAGAACACCTAAAAGGAAG
AAATCCCATGCACGAATAAATCGTTCAATGAcatgatttttataagaacc
caTACCTTTCCTTTTTATTCTTTTCGTATGTAGAAATATTTGCAAATTTG
AAGAGAATATGCTGATTTTGATTTTACACTTCTCTGTTTTCATGTCTTTA
GTTAGAAAACTGTAGATTTCTTTCACGGTTCGAGAAACATTAATTAAACT
GAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029352-exon-sc0000744-1491911889:44837..46193 | TCONS_00029352-exon-sc0000744-1491911889:44837..46193 | Clytia hemisphaerica | exon |
| TCONS_00029352-exon-sc0000744-1510915933:44837..46193 | TCONS_00029352-exon-sc0000744-1510915933:44837..46193 | Clytia hemisphaerica | exon |
| TCONS_00029352-exon-sc0000744-1575043694:44837..46193 | TCONS_00029352-exon-sc0000744-1575043694:44837..46193 | Clytia hemisphaerica | exon |
| TCONS_00029352-exon-sc0000744-1491911889:46575..46657 | TCONS_00029352-exon-sc0000744-1491911889:46575..46657 | Clytia hemisphaerica | exon |
| TCONS_00029352-exon-sc0000744-1510915933:46575..46657 | TCONS_00029352-exon-sc0000744-1510915933:46575..46657 | Clytia hemisphaerica | exon |
| TCONS_00029352-exon-sc0000744-1575043694:46575..46657 | TCONS_00029352-exon-sc0000744-1575043694:46575..46657 | Clytia hemisphaerica | exon |
| TCONS_00029352-exon-sc0000744-1491911889:47128..47524 | TCONS_00029352-exon-sc0000744-1491911889:47128..47524 | Clytia hemisphaerica | exon |
| TCONS_00029352-exon-sc0000744-1510915933:47128..47524 | TCONS_00029352-exon-sc0000744-1510915933:47128..47524 | Clytia hemisphaerica | exon |
| TCONS_00029352-exon-sc0000744-1575043694:47128..47524 | TCONS_00029352-exon-sc0000744-1575043694:47128..47524 | Clytia hemisphaerica | exon |
| TCONS_00029352-exon-sc0000744-1491911889:47818..50040 | TCONS_00029352-exon-sc0000744-1491911889:47818..50040 | Clytia hemisphaerica | exon |
| TCONS_00029352-exon-sc0000744-1510915933:47818..50040 | TCONS_00029352-exon-sc0000744-1510915933:47818..50040 | Clytia hemisphaerica | exon |
| TCONS_00029352-exon-sc0000744-1575043694:47818..50040 | TCONS_00029352-exon-sc0000744-1575043694:47818..50040 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000744 | supercontig | sc0000744:44837..50040 + |
Blast
The following BLAST results are available for this feature:
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