TCONS_00029347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029347
Unique NameTCONS_00029347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029347 ID=TCONS_00029347|Name=TCONS_00029347|organism=Clytia hemisphaerica|type=transcript|length=439bp
ATCACACCCAGCAGGTACTGAACAATCTCAGATACTTCAGAGACGGGAGA
AGATTATCAATAACGCTCTGGTTGGCTCTAAGATTTTGTTGAGAAAATGA
TAAGAAAACGTatgatacacccctgtttcagtgacccGGTCAAGGATCCG
TCCCGATAAAAACCggtgaaaaaatacaaaaaattacCTAACACTGACAC
GTTCACTGCCAAGCCACTTTGACCTTATTGAATTTcatcgaaagtttgac
tttcaaaGGCTCCAGCCGCCTTGGTTCTGCTTTAAGTGCCTACAAATTGC
CTACCGATCGACGCAGAATTTGAGggtaagatttcaaaaatgcaaaaacg
aatcaaaaaaaagtatttgcTTTAAAGGTTATGGCCCTTTAGAGTACTGT
CGGTATTTTGACACCTATACTACAACTAGGTCAACCCag
Run BLAST on NCBI

transcript from alignment at sc0000744:9395..10263+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029347 ID=TCONS_00029347|Name=TCONS_00029347|organism=Clytia hemisphaerica|type=transcript|length=869bp|location=Sequence derived from alignment at sc0000744:9395..10263+ (Clytia hemisphaerica)
ATCACACCCAGCAGGTGCGTATTTCTTTTTTAACCTAAGAAGAGTCTAGC
ACACCCACACCCACGACCCTGTTTCACTGGCCATGTTAGGTTAATAGAAA
TTGCGCTCAAAAAAACCCAGTGTTCATATCCCGTTGTTTACGGACATTTT
AAATGAACACTGTTTTGACGTTTAGCGTCCATTGAATACCCATGTCTCAA
GTATCATTCGACCGCTACAAATGGCCCGTGAAAAGCTAACTTTTTCTACT
TTCGCAGTGATACTGGGTGTGATAGCTGAGTCGATAAAAAGAATAGAGAA
ATTAATCCGATCATCGTATATTTTTGTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATCatcgtatatttttgttttctccttaTTTCAGGTACTG
AACAATCTCAGATACTTCAGAGACGGGAGAAGATTATCAATAACGCTCTG
GTTGGCTCTAAGATTTTGTTGAGAAAATGATAAGAAAACGTatgatacac
ccctgtttcagtgacccGGTCAAGGATCCGTCCCGATAAAAACCggtgaa
aaaatacaaaaaattacCTAACACTGACACGTTCACTGCCAAGCCACTTT
GACCTTATTGAATTTcatcgaaagtttgactttcaaaGGCTCCAGCCGCC
TTGGTTCTGCTTTAAGTGCCTACAAATTGCCTACCGATCGACGCAGAATT
TGAGggtaagatttcaaaaatgcaaaaacgaatcaaaaaaaagtatttgc
TTTAAAGGTTATGGCCCTTTAGAGTACTGTCGGTATTTTGACACCTATAC
TACAACTAGGTCAACCCag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016739XLOC_016739Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029347-exon-sc0000744-1491911889:9395..9408TCONS_00029347-exon-sc0000744-1491911889:9395..9408Clytia hemisphaericaexon
TCONS_00029347-exon-sc0000744-1510915933:9395..9408TCONS_00029347-exon-sc0000744-1510915933:9395..9408Clytia hemisphaericaexon
TCONS_00029347-exon-sc0000744-1575043694:9395..9408TCONS_00029347-exon-sc0000744-1575043694:9395..9408Clytia hemisphaericaexon
TCONS_00029347-exon-sc0000744-1491911889:9839..10263TCONS_00029347-exon-sc0000744-1491911889:9839..10263Clytia hemisphaericaexon
TCONS_00029347-exon-sc0000744-1510915933:9839..10263TCONS_00029347-exon-sc0000744-1510915933:9839..10263Clytia hemisphaericaexon
TCONS_00029347-exon-sc0000744-1575043694:9839..10263TCONS_00029347-exon-sc0000744-1575043694:9839..10263Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000744supercontigsc0000744:9395..10263 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.607636	0.305574	0	0	1.15532	0.783366	0.854567	0.389225	1.13584	0.535662	1.37123	0.889287	0.866568	1.02152	0.336832	2.35461	0.340723	0	1.1864	1.34061	0	0.554717	1.05759	0.938193	1.02486	0.471088
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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