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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029346 ID=TCONS_00029346|Name=TCONS_00029346|organism=Clytia hemisphaerica|type=transcript|length=2302bp
AGATTAAAGATATATTACAACCAGACATTACTAATCCATAAAATCGATTA
TCAATTAAAATGATAgctaaggcggcaatcacaaatatgttcatttcGCG
TCTTCGTtaggtctaaaaagtgagtcggtcggtcggtcataaaaaatttt
gtttttccatttttccatccatttttggagtgcattcttggagtaaactg
ccagccagccagcagccaaaacaaccgcgtgtaatgggtggttttagaat
tatgacctttgaaaacTTGTGACCTCCGAtcccaaaatggcgcatgtaat
gataaacaaagtcaagcCTAAGGCAGCGATCACATATATCTTCNcagcag
ccaaaacaaccgcgtgtaatgggtggttttagaattatgacctttgaaaa
cTTGTGACCTCCGAtcccaaaatggcgcatgtaatgataaacaaagtcaa
gcCTAAGGCAACGATCACatatatcttcatttcgcgtcctcgttgggtct
aaaaagtgaggcgGGCGGCCGTAAAAAATTTTATCGATTATCGTTTTAAA
TCGATATGTAAACATTTGGGTGTTTCAGATAATAAcagcaattattgctc
ttttctgCAATTATTGCTGtatttggaaagaaaagttgattttattaaac
ACATGGTATTTGACACTTGTGCAATAAATAGGTCCACTGTGCctttagtt
ttgtttttatctggtttttgtCGGAAATGCGATGGCAAAATCAAGTCATG
TGTAAACAAACTTACAACAGgggttttgttttctctttccggctgtgttt
cggcatcgatgcaggatcttttaacattttattttaagaattGTTCATGT
TAATGAGCAATGAAAAATTTAAAAATTCACTTTTAAGAAAACGAAAAACC
TTTTTGTCGATGCAATTTTACAATTTTCAAACACCTGACCTCTTTGCCCT
TATAAGTACAATTCATTTTGCTGACTCAGCATTTCATTGCTAATTGCAGA
AAAGAGCAATAATTGCTGTTTTTATCTTAAACACTTAACTATTTAGGCGG
CAACCTAAAATATATTCCATTCGTGTCATAAAACATCTTCAAATCCAGTC
GGTCGGTCGGTAGTAAATTTTGTCGGGTTTTTAAAATCTAGTAAATCCCA
AAGAATCAAGTCGGCAATCAACAAAATCTTCGCCAGTGAACCTTAAAAGC
GGACCTTATTTTCGGCTCTCAGGGGTATTGGCCCTACCGCGTCGCCAAAT
TTCGACTTAAAAAATTTCAATAAGTGTACATGAAAAAACTCAAATGGGAC
TCAATGTGGGTTAAGTAAACAAAAACTCACAGCGAATGATGATTCAAAGA
AGTGCTTTGCTATCAAAATCTTTTTCCAACTCTGGATTTATGTTTTGAAG
GTGAGTCGGTCGGACGATGCAAATGGAACATATTTTAGGTTGCCGTCTTA
ATCAATCTATTGGTTATCAATTAGCTATCAATTTTATCGATTAGTAAAGT
CTGGATTTCAAGGAAAGGTGATTTCAGTACCTAAATCTTAATTTtttgag
agctttccaaaaatagacAACATGTCTCAGCTTTCTCAAGcttaaatttt
cattaattttttaccctttgatttttgcctgagactgtCATATTTGTCCC
AATATCACACCAAAGTGTACGAAAAATGgaacccaagttattttgattcc
cctatcCCTTAGCTTCCCTAAAATGTATAATTAGTGTTTTGACCAAAAAG
GAGTATTAAATATTGAGTTGAATACTTTATTTTGTTGAGGTCAGTCTACA
AAATTTAAAGCTACTGAAGTTGAATGAACCCAGTGCATTATGCATGTTTA
ACTCTTGGCTTTGTTCACAAATCTCCTCTTAACTTTTAAGCTGTCAAAAT
CATGAAGAGCAAGAAGAATGACTCAGTCAAATTCAAGGTCAGATGCAGCC
GTTACTTATACACTTTGACTGTCCAAGACAAAGAAAAGGCAGAAAAGCTT
AAGCAATCTCTCCCACCAGgtCTTCAAGTCAAAGACATCAAATCATAGAT
ATGAAATATATTTATTGATCTTCACaaacacaatttctcttttttaaagT
GCCTAGTTTTATagatttccaataaaattttcagaccatggttctgacct
ttttcttaatcagcataaaatttctgatcgattggtatataatatgcagg
cttttaagctcaaaaaaatattattcttaggctagcagagcctGAGAGCC
CATGCgacgaaagaaagttttgaatccgccattatggatttcgaaattca
tg Run BLAST on NCBI transcript from alignment at sc0000744:1..2526+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029346 ID=TCONS_00029346|Name=TCONS_00029346|organism=Clytia hemisphaerica|type=transcript|length=2526bp|location=Sequence derived from alignment at sc0000744:1..2526+ (Clytia hemisphaerica)
AGATTAAAGATATATTACAACCAGACATTACTAATCCATAAAATCGATTA
TCAATTAAAATGATAgctaaggcggcaatcacaaatatgttcatttcGCG
TCTTCGTtaggtctaaaaagtgagtcggtcggtcggtcataaaaaatttt
gtttttccatttttccatccatttttggagtgcattcttggagtaaactg
ccagccagccagcagccaaaacaaccgcgtgtaatgggtggttttagaat
tatgacctttgaaaacTTGTGACCTCCGAtcccaaaatggcgcatgtaat
gataaacaaagtcaagcCTAAGGCAGCGATCACATATATCTTCNcagcag
ccaaaacaaccgcgtgtaatgggtggttttagaattatgacctttgaaaa
cTTGTGACCTCCGAtcccaaaatggcgcatgtaatgataaacaaagtcaa
gcCTAAGGCAACGATCACatatatcttcatttcgcgtcctcgttgggtct
aaaaagtgaggcgGGCGGCCGTAAAAAATTTTATCGATTATCGTTTTAAA
TCGATATGTAAACATTTGGGTGTTTCAGATAATAAcagcaattattgctc
ttttctgCAATTATTGCTGtatttggaaagaaaagttgattttattaaac
ACATGGTATTTGACACTTGTGCAATAAATAGGTCCACTGTGCctttagtt
ttgtttttatctggtttttgtCGGAAATGCGATGGCAAAATCAAGTCATG
TGTAAACAAACTTACAACAGgggttttgttttctctttccggctgtgttt
cggcatcgatgcaggatcttttaacattttattttaagaattGTTCATGT
TAATGAGCAATGAAAAATTTAAAAATTCACTTTTAAGAAAACGAAAAACC
TTTTTGTCGATGCAATTTTACAATTTTCAAACACCTGACCTCTTTGCCCT
TATAAGTACAATTCATTTTGCTGACTCAGCATTTCATTGCTAATTGCAGA
AAAGAGCAATAATTGCTGTTTTTATCTTAAACACTTAACTATTTAGGCGG
CAACCTAAAATATATTCCATTCGTGTCATAAAACATCTTCAAATCCAGTC
GGTCGGTCGGTAGTAAATTTTGTCGGGTTTTTAAAATCTAGTAAATCCCA
AAGAATCAAGTCGGCAATCAACAAAATCTTCGCCAGTGAACCTTAAAAGC
GGACCTTATTTTCGGCTCTCAGGGGTATTGGCCCTACCGCGTCGCCAAAT
TTCGACTTAAAAAATTTCAATAAGTGTACATGAAAAAACTCAAATGGGAC
TCAATGTGGGTTAAGTAAACAAAAACTCACAGCGAATGATGATTCAAAGA
AGTGCTTTGCTATCAAAATCTTTTTCCAACTCTGGATTTATGTTTTGAAG
GTGAGTCGGTCGGACGATGCAAATGGAACATATTTTAGGTTGCCGTCTTA
ATCAATCTATTGGTTATCAATTAGCTATCAATTTTATCGATTAGTAAAGT
CTGGATTTCAAGGAAAGGTGATTTCAGTACCTAAATCTTAATTTtttgag
agctttccaaaaatagacAACATGTCTCAGCTTTCTCAAGcttaaatttt
cattaattttttaccctttgatttttgcctgagactgtCATATTTGTCCC
AATATCACACCAAAGTGTACGAAAAATGgaacccaagttattttgattcc
cctatcCCTTAGCTTCCCTAAAATGTATAATTAGTGTTTTGACCAAAAAG
GAGTATTAAATATTGAGTTGAATACTTTATTTTGTTGAGGTCAGTCTACA
AAATTTAAAGCTACTGAAGTTGAATGAACCCAGTGCATTATGCATGTTTA
ACTCTTGGCTTTGTTCACAAATCTCCTCTTAACTTTTAAGCTGTCAAAAT
CATGAAGAGCAAGAAGAATGACTCAGTCAAATTCAAGGTCAGATGCAGCC
GTTACTTATACACTTTGACTGTCCAAGACAAAGAAAAGGCAGAAAAGCTT
AAGCAATCTCTCCCACCAGGTAAATTTTTATAGACAGTTATTATTGACCT
CTTTAATATCCCGATACTAAACAACAaagttaaaattgacgagtaagcaa
aggataccattcttatttaaaacaaaacctttaatgaaGGTCTATTATTG
TTTTAACNatcttttttaaaaaaacaaaccatacTTGTCTATATTTTTTG
AACCTATTATTGTTTTAACGAATaatcattcttttgtttttaggtCTTCA
AGTCAAAGACATCAAATCATAGATATGAAATATATTTATTGATCTTCACa
aacacaatttctcttttttaaagTGCCTAGTTTTATagatttccaataaa
attttcagaccatggttctgacctttttcttaatcagcataaaatttctg
atcgattggtatataatatgcaggcttttaagctcaaaaaaatattattc
ttaggctagcagagcctGAGAGCCCATGCgacgaaagaaagttttgaatc
cgccattatggatttcgaaattcatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029346-exon-sc0000744-1491911889:1..2019 | TCONS_00029346-exon-sc0000744-1491911889:1..2019 | Clytia hemisphaerica | exon |
| TCONS_00029346-exon-sc0000744-1510915933:1..2019 | TCONS_00029346-exon-sc0000744-1510915933:1..2019 | Clytia hemisphaerica | exon |
| TCONS_00029346-exon-sc0000744-1575043694:1..2019 | TCONS_00029346-exon-sc0000744-1575043694:1..2019 | Clytia hemisphaerica | exon |
| TCONS_00029346-exon-sc0000744-1491911889:2244..2526 | TCONS_00029346-exon-sc0000744-1491911889:2244..2526 | Clytia hemisphaerica | exon |
| TCONS_00029346-exon-sc0000744-1510915933:2244..2526 | TCONS_00029346-exon-sc0000744-1510915933:2244..2526 | Clytia hemisphaerica | exon |
| TCONS_00029346-exon-sc0000744-1575043694:2244..2526 | TCONS_00029346-exon-sc0000744-1575043694:2244..2526 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000744 | supercontig | sc0000744:1..2526 + |
Blast
BLAST of TCONS_00029346 vs. Swiss-Prot (Human)
Match: RL38 (60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 3.163e-16 Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 3
Query: 1890 AVKIMKSKKNDSVKFKVRCSRYLYTLTVQDKEKAEKLKQSLPPGLQVKDIK 2042
+VKI K+K D+VKFKVRCSRYLYTL + DKEKAEKLKQSLPPGL VK++K
Sbjct: 22 SVKIKKNK--DNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70
The following BLAST results are available for this feature:
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