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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029345 ID=TCONS_00029345|Name=TCONS_00029345|organism=Clytia hemisphaerica|type=transcript|length=1795bp
GGAGAGTATATCCATCCAACAAGATATCGACAAATAGTTGAAACAGCAAG
TGCGGATAGATTATCTCGATCCGAACAGGAGATAATATCAGAGGATCAAA
AACATAGCTCTGATGTTGCAAAGGTTCACTACAAAAAGAAACAATCGAGA
ATAGTCGCCACACACGGTCGTCAATGCATGGAGAAAATGCTTGGTACTAC
ACGAAAGGATCACCAAGAAGCATGTTCAGGCGTGCTCAGAGATTTAGCTG
TCCTGTCAagaaatacaattgaatcacaACCAAGTCAAGACGCAGTTGCT
agttcatcttcttcttcaacCTCAACAAACAATCTGATTCCAATGATAGT
AGATTCAGACGATGACGCATTTGAACCAAGTAATATCGAGGCTCAATGCA
CTGAAGTGAACAACATCATGTAACGTGTACAATCAATGTGTTCGACTTCA
CCTATCTCAAATCAAAATCTAAACGAGTCAAGAGACGTACAAATGGAAGT
CGTAAGGTCAACTGTATCCTCTACACCAAAACGTCCTCAAAACGCTAAGA
GTTACGACNTTTTACAATCAATGTGTTCGACTTCACCTATCTCAAATCAA
AATCTAAACGAGTCAAGAGACGTACAAATGGAAGTCGTAAGGTCAACTGT
ATCCTCTACACCAAAACGTCCTCAAAACGCTAAGAGTTACGACAAAAGAA
GAATAACTGAAAGTGTAGAGGTGAAAAAGGAAATTGCCATTAAAGAGACA
AGAAAATctagaaatatcaaattttcacaaGAGGAAGATGGGGAGCTTTT
AAAATGGATACAAAAACATGGTGAGAAGAATTGGGCAGCCATTATAAAAG
ACAAAACATTTGAATTTCATCCCTCAAGGACAAGAGACTCGTTGAGGGTA
CGAGCAgattcagcaaaatttaaaaagcttttgaaaatgtaaattgacTA
TGAATTTTAAANTACAATCAATGTGTTCGACTTCACCTATCTCAAATCAA
AATCTAAACGAGTCAAGAGACGTACAAATGGAAGTCGTAAGGTCAACTGT
ATCATCTACACCGAAACGTCCTCAAAACGCTAAGAGTTACGACAAAAGAA
GAATAACTGAAAGTGTAGAGGTGAAAAAGGAAATTGCCATTAAAGAGACA
AGAAAATctagaaatatcaaattttcacaaGAGGAAGATGGGGAGCTTTT
AAAAGGGATACAAAAACATGGTGAGAAGAATTGGGCAGCCATTATAAAAG
ACAAAACATTTGAATTTCACCCCTCAAGGACAAGAGACTCGTTGAGGGTA
CGAGCAgattcagcaaaatttaaaaagcttttgaaaatgtaaattaacta
tGAGTTTTAAAGTGTTATTTAAACAGTTAATTAAATATTTGATGGAAATT
TGTATAGGCCAGTGTCATTTAAGATAATTATATTGTTCTGCTATGCAATT
CTCTACTTGTATAGTAGTAATACATTCccattcatttcaaattttgaaat
tttgaatttatttcctCAAAAGGGCTATTCTAACTGCAGACCACTGGTAG
CAAATAGAAAGTCTGTCAATTTTAGTTTACAATTTACATGATAGCCAAGT
AGCCAAATGATTTTTGGAAGAATAAGAAAGTTATTTCTATGAATGACGTa
actgaaaatagaaaaggacataataaaattgtaattttttgacATGCGCA
CTCAATAAGAAGTAAAactttgtcatttttaattctttttgatCGATAAA
CTATTTCGAATGTAGACCACTAGTAGAAAATAAATAGCCTGCCAA Run BLAST on NCBI protein sequence of TCONS_00029345-protein >TCONS_00029345-protein ID=TCONS_00029345-protein|Name=TCONS_00029345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MCSTSPISNQNLNESRDVQMEVVRSTVSSTPKRPQNAKSYDXLQSMCSTS
PISNQNLNESRDVQMEVVRSTVSSTPKRPQNAKSYDKRRITESVEVKKEI
AIKETRKSRNIKFSQEEDGELLKWIQKHGEKNWAAIIKDKTFEFHPSRTR
DSLRVRADSAKFKKLLKM Run BLAST on NCBI transcript from alignment at sc0000742:161662..163456 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029345 ID=TCONS_00029345|Name=TCONS_00029345|organism=Clytia hemisphaerica|type=transcript|length=1795bp|location=Sequence derived from alignment at sc0000742:161662..163456 (Clytia hemisphaerica)
TTGGCAGGCTATTTATTTTCTACTAGTGGTCTACATTCGAAATAGTTTAT
CGatcaaaaagaattaaaaatgacaaagtTTTACTTCTTATTGAGTGCGC
ATgtcaaaaaattacaattttattatgtccttttctattttcagttACGT
CATTCATAGAAATAACTTTCTTATTCTTCCAAAAATCATTTGGCTACTTG
GCTATCATGTAAATTGTAAACTAAAATTGACAGACTTTCTATTTGCTACC
AGTGGTCTGCAGTTAGAATAGCCCTTTTGaggaaataaattcaaaatttc
aaaatttgaaatgaatggGAATGTATTACTACTATACAAGTAGAGAATTG
CATAGCAGAACAATATAATTATCTTAAATGACACTGGCCTATACAAATTT
CCATCAAATATTTAATTAACTGTTTAAATAACACTTTAAAACTCatagtt
aatttacattttcaaaagctttttaaattttgctgaatcTGCTCGTACCC
TCAACGAGTCTCTTGTCCTTGAGGGGTGAAATTCAAATGTTTTGTCTTTT
ATAATGGCTGCCCAATTCTTCTCACCATGTTTTTGTATCCCTTTTAAAAG
CTCCCCATCTTCCTCttgtgaaaatttgatatttctagATTTTCTTGTCT
CTTTAATGGCAATTTCCTTTTTCACCTCTACACTTTCAGTTATTCTTCTT
TTGTCGTAACTCTTAGCGTTTTGAGGACGTTTCGGTGTAGATGATACAGT
TGACCTTACGACTTCCATTTGTACGTCTCTTGACTCGTTTAGATTTTGAT
TTGAGATAGGTGAAGTCGAACACATTGATTGTANTTTAAAATTCATAgtc
aatttacattttcaaaagctttttaaattttgctgaatcTGCTCGTACCC
TCAACGAGTCTCTTGTCCTTGAGGGATGAAATTCAAATGTTTTGTCTTTT
ATAATGGCTGCCCAATTCTTCTCACCATGTTTTTGTATCCATTTTAAAAG
CTCCCCATCTTCCTCttgtgaaaatttgatatttctagATTTTCTTGTCT
CTTTAATGGCAATTTCCTTTTTCACCTCTACACTTTCAGTTATTCTTCTT
TTGTCGTAACTCTTAGCGTTTTGAGGACGTTTTGGTGTAGAGGATACAGT
TGACCTTACGACTTCCATTTGTACGTCTCTTGACTCGTTTAGATTTTGAT
TTGAGATAGGTGAAGTCGAACACATTGATTGTAAAANGTCGTAACTCTTA
GCGTTTTGAGGACGTTTTGGTGTAGAGGATACAGTTGACCTTACGACTTC
CATTTGTACGTCTCTTGACTCGTTTAGATTTTGATTTGAGATAGGTGAAG
TCGAACACATTGATTGTACACGTTACATGATGTTGTTCACTTCAGTGCAT
TGAGCCTCGATATTACTTGGTTCAAATGCGTCATCGTCTGAATCTACTAT
CATTGGAATCAGATTGTTTGTTGAGgttgaagaagaagatgaactAGCAA
CTGCGTCTTGACTTGGTtgtgattcaattgtatttctTGACAGGACAGCT
AAATCTCTGAGCACGCCTGAACATGCTTCTTGGTGATCCTTTCGTGTAGT
ACCAAGCATTTTCTCCATGCATTGACGACCGTGTGTGGCGACTATTCTCG
ATTGTTTCTTTTTGTAGTGAACCTTTGCAACATCAGAGCTATGTTTTTGA
TCCTCTGATATTATCTCCTGTTCGGATCGAGATAATCTATCCGCACTTGC
TGTTTCAACTATTTGTCGATATCTTGTTGGATGGATATACTCTCC Coding sequence (CDS) from alignment at sc0000742:161662..163456 >TCONS_00029345 ID=TCONS_00029345|Name=TCONS_00029345|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0000742:161662..163456 (Clytia hemisphaerica)
ttacattttcaaaagctttttaaattttgctgaatcTGCTCGTACCCTCA
ACGAGTCTCTTGTCCTTGAGGGATGAAATTCAAATGTTTTGTCTTTTATA
ATGGCTGCCCAATTCTTCTCACCATGTTTTTGTATCCATTTTAAAAGCTC
CCCATCTTCCTCttgtgaaaatttgatatttctagATTTTCTTGTCTCTT
TAATGGCAATTTCCTTTTTCACCTCTACACTTTCAGTTATTCTTCTTTTG
TCGTAACTCTTAGCGTTTTGAGGACGTTTTGGTGTAGAGGATACAGTTGA
CCTTACGACTTCCATTTGTACGTCTCTTGACTCGTTTAGATTTTGATTTG
AGATAGGTGAAGTCGAACACATTGATTGTAAAANGTCGTAACTCTTAGCG
TTTTGAGGACGTTTTGGTGTAGAGGATACAGTTGACCTTACGACTTCCAT
TTGTACGTCTCTTGACTCGTTTAGATTTTGATTTGAGATAGGTGAAGTCG
AACACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029345-exon-sc0000742-1491911889:161662..163456 | TCONS_00029345-exon-sc0000742-1491911889:161662..163456 | Clytia hemisphaerica | exon |
| TCONS_00029345-exon-sc0000742-1510915933:161662..163456 | TCONS_00029345-exon-sc0000742-1510915933:161662..163456 | Clytia hemisphaerica | exon |
| TCONS_00029345-exon-sc0000742-1575043694:161662..163456 | TCONS_00029345-exon-sc0000742-1575043694:161662..163456 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000742 | supercontig | sc0000742:161662..163456 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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