TCONS_00029342 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029342
Unique NameTCONS_00029342
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029342 ID=TCONS_00029342|Name=TCONS_00029342|organism=Clytia hemisphaerica|type=transcript|length=1377bp
gtgcaGCCTAAGTCCCAGGGGGAGTGGGGGTAATAAAGCAAATGGAGGGA
AGAGAAATGTACCAACCTTaaaggtgccttttttggacctTCAAAGTCCC
TGTCTAAGTCCTAAAAAGGCCAAAGGGTaataaaaatcataacatcTATT
TTCAGAGATTAAGACAAGCTGTATAGCCCAACCAAAACAAGTATTAAGAT
GATATTGACACAAGAGCATTGATAATCCAAAGCTCCTTCCCTCAGATAAA
TAATTAAGGGTATACCAAACGGGATACCAAAGAACACAAGAATAAATACC
TTGAACTTTACCAAAAACTTCGAATGAAATTGACTTTGCTGCAGCCATTT
TGCTTTGATTTGTTTGCCGAAAACCATTCGTCAAGACAATGTCTCCTTCA
AGCCTATCCACACTACAGTTCATAAATCTTAGGTTTATAACTAGGCTGTC
GTGTAGACAGGCCATAAAAATACTTGTTGTTTCAATTCATGCCTTTTAGT
CATTCTATTTGTACCACGATTGAAACAAAAATTGACATTTGAAAGCCAGC
GAACACGGGAGAATAGCCTAAAACGGGAGAACACGTTAGGGAAATTTTCT
GTGTGTTTTTCATTTCACAAATTCAACCATGACTGACCTAATGAAAGAAG
AAGGTGTTGCTGCACTCTTAAAAGGAATCGATAGGTACAATCCAGAAAAT
TTGGCTCCCCTGGAGGAttatgtcaaaatgcagGCTATGAAACAAACATA
TAATTTGGATGCAAATTTAGCTGTCCTTAAATTATATCAATTCAATCCAC
AAATGTTCAAAGAAGATATCACTTGTCAGATTCTGTTGCAAGCTCTGATG
AATCTACCAAACACAAATTTCACCCTATGCAAATGTCTGATGATAGAACA
ACATCAATCAATGGAAAATGTCAATAAAGTTATAGAATTATCAaatttat
tagaaacttgtgagTTCCAGCAATTTTGGcaaGAGTTAAAAACATGCACA
GAACTGATTGAGGGAATAAAAGGATTTAAGGAGTCCATAAAAAGCTtCAT
TGCTTCGGTTCTAAACATCACATaccaaaatattgataaaaatctACTCA
AAGAAATACTTGGGGGTATTGAAGacGAGGATTTGGCTGAGTTCTGTAAA
GATAACGATTGGAAGATAGATGGGGAGTTTGTTTCCATTAGAAATCAAGA
CGCACATGTCAAATCGAAAAATATTAGTGAGAAAATCACTTTCGAAAACG
TGTCACCGATCATCAAGACTTGTACAAGATAATTCttttgattttatcat
tagCTAATTATTTAACACTTTCTTCTACATGAAAAACAGACTGTAAAAAC
TCCCTTCCTATTTGTTGTTCAATTATT
Run BLAST on NCBI

protein sequence of TCONS_00029342-protein

>TCONS_00029342-protein ID=TCONS_00029342-protein|Name=TCONS_00029342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MTDLMKEEGVAALLKGIDRYNPENLAPLEDYVKMQAMKQTYNLDANLAVL
KLYQFNPQMFKEDITCQILLQALMNLPNTNFTLCKCLMIEQHQSMENVNK
VIELSNLLETCEFQQFWQELKTCTELIEGIKGFKESIKSFIASVLNITYQ
NIDKNLLKEILGGIEDEDLAEFCKDNDWKIDGEFVSIRNQDAHVKSKNIS
EKITFENVSPIIKTCTR
Run BLAST on NCBI

transcript from alignment at sc0000742:113857..126904-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029342 ID=TCONS_00029342|Name=TCONS_00029342|organism=Clytia hemisphaerica|type=transcript|length=13048bp|location=Sequence derived from alignment at sc0000742:113857..126904- (Clytia hemisphaerica)
GTGCAGCCTAAGTCCCAGGGGGAGTGGGGGTAATAAAGCAAATGGAGGGA
AGAGAAATGTACCAACCTTAAAGGTGCCTTTTTTGGACCTTCAAAGTCCC
TGTCTAAGTCCTAAAAAGGCCAAAGGGTAATAAAAATCATAACATCTATT
TTCAGAGATTAAGACAAGCTGTATAGCCCAACCAAAACAAGTATTAAGAT
GATATTGACACAAGAGCATTGATAATCCAAAGCTCCTTCCCTCAGATAAA
TAATTAAGGGTATACCAAACGGGATACCAAAGAACACAAGAATAAATACC
TTGAACTTTACCAAAAACTTCGAATGAAATTGACTTTGCTGCAGCCATTT
TGCTTTGATTTGTTTGCCGAAAACCATTCGTCAAGACAATGTCTCCTTCA
AGCCTATCCACACTACAGTTCATAAATCTTAGGTTTATAACTAGGCTGTC
GTGTAGACAGGCCATAAAAATACTTGTTGTTTCAATTCATGCCTTTTAGT
CATTCTATTTGTACCACGATTGAAACAAAAATTGACATTTGAAAGCCAGC
GAACACGGGAGAATAGCCTAAAACGGGAGAACACGTTAGGGAAATTTTCT
GTGTGTTTTTCATTTCACAAATTCAACCATGACTGACCTAATGAAAGAAG
AAGGTGTTGCTGCACTCTTAAAAGGAATCGATAGGTAAGACACTATGTTA
AAATTCAAAATAGAAAGGCAGTAATTAAACGCATTCTGTCTGGTCGGTAA
GGAGGGGTTTAGTGTCGAAATTTCAAAATCATTTTCAAAATGTCAAACCA
AGTTTAATGAAAAGCCCTTATCCTCAGAAAAAAAAAGAGGGGTCACTTAT
CTTTCAACCAATAGTAGGTTTTCAGATATTTCCTTTTAAAGTTCCATTTT
TTTGAAGATTTCTGCTCAAAAACCTCCTGCCATCTTGTTAACATCTCCAC
AGCACACACTGAAATCGAAAGTGTTTTACAAAAAAATCTGCGCAGGAAGT
TTGCGGCGAGAGTATTTTTCCTTAGTGCAAAAGAGACGGGGGTCACTATA
CCATTAACTTTCCCTTACTAGCGACTCCAGAAGTCAGGCAACTTTCGTTA
AACGTCAAACCAAATGTTCATTTTTCCGTGAACTTTGAACCCTTCGAACA
TTTTTTCTATGTATGCTAAATCGTTCCGGTTTTTACTAAAAAAAAGCCCG
TGATCTTAGCTTTCCAGCGGTATATAACACTGTGGACTCGGGCTAGACGG
CAAATTGGTAATAAAGTACCAAACGTTTTTGCAACATTTTAAAAATTGTT
TTCCGACGGGAGAAAAATAAGTACGACCCACGGCATGGCCCGAACATGTT
CGGGCCTCTTGATTAATACTTTTTAAAAATGGCCTGCGCGGGCCCGCGTA
GTTTCGGACCATGTTCGGGCCAGATTTTTGAAAACTTGCTACGATCGCGC
GTGTAATTTCAGGACCCAATATTTATATTTTTAATTCCTTATTTTAGCCA
AACAAATTTAAAAATCTTCATCTTTATTCAAATATATATTGTTCAAATAT
AAAAGTTAATCATCTATTTTTCAATTAAGTTAGGAAAAGTATTAAAAAGA
ATGATTTGAATCTTACATAATATGGTCTTCTTTTTATTCTTTATCCCGTT
CCCTTTTCTCGTGGTCTTTTCCTATTCGAAGCAGAATTTTTCTGGATCGT
TTTTTGTACTGTTATACAACTTTGTGAATCAAACTGGTATTTGGAACTTT
GAATTTGTCTAATAAAAATATTTAACAATGGATGATGATAAACCAGGAAA
GGTAAATATCAATTGTAAATACATGACCCGAACATGGTCCGAACAAAATG
TTCCGGCCGATTCAATAATACTTTTTTGTGGCCCGAGCATGATCCGAACA
GGCCCGAACATGTTCGGGCCATGCCGTGGGTCGTAAATAAGTTGCAACTA
TCGTTGAACAAATGTTTCTGGAAATGGAGGAAAATGTAGTTGAAGGCTGA
AACTTTGTAATGTTTATCAGAAAAAGGGTGAGGAATTCAAAAATCACAAT
CGCTAATATTTTAGTTCTTTGATTTTCATGTAGTTTTTTTCACTTTTTTG
CATGTGAATGTCCCAAAAAAAAGTTTATATTTCTGCCGAAATGGATTTTC
TTTTCATTTGGGGTTTCTCCTTTCAGAAAAACTTATTCTTTACTTATAAT
ATTTTGTTCCTCCATTTCCAGAGGCCCCTTGAAAATGGGTCCTATCACCT
TTTTTGACTCATTTCAACCTTTTCCGAGCTAATTTTCTTCAAAAACAAAA
ATAAAACAATGCAATGTCTTCTTTTTTCAAAAAAAGATATATCTTTCGTT
ATTTTCATAAATATACAAATATTTTACAAATATTTTTATGTAATAATATT
CTAACACCATCAAAGAATTCTCCCTCCAAATTTCAGGTCTCTAGCTACAC
TAGAAAAGGAGATATGCAAAATTAAAGAAGCCTGACTGGGAAATATCTTT
TTTTTCTTTTTTGACACATTTTTCGAATTTTTCCAAGCTATAGTTTGTTA
TGTAGCAGTATGGTTATTAACACCACTGATTATACACAAATCATACCATA
AGATAAACTGGTGTTACTTACTTTTTTGATACTTTTTGAAGGCTTCTTTG
TTCGTCTCAACAATCATCCAATTTGAGAAATCCGATGATGGACCATGACT
TTGATGCTATTTGAATCAGCTCTCCTAAGAGGAAAGTAATTTGGCAGCAG
TGGCTCGTCCGGTAGTGAATTGAGAAAATGGTCCAATTGATGTTTAAACT
TAGTTTTGGAGCAGTTTTTAAGGTTACGGATGGATTGTGGGAGGGCATTA
AATAGTATGGGTCCTTCTTCTGACAGGGAGTCTCCATATGTTTTTTTGCC
TTATGTTTAGATAACATTTTCTACCCAGTCTCAGTTATCGCATAGTTAAA
ATTTGGTACAAGCTGTTCTAGGATGCTCCAGGTGTAGAAAATCCTGTATC
TTTCTCTGCGTTGCTCCAGGCTGTATAGTTTAAGTTCTTTGAGCTTCTCC
CAATAGTTGAGATGTTGAAGTGTAGGGATTCAATTCAGGTAAGATTTTTG
ATGTGATTCCAGTTGTTGGATCAGATATCTTTTTGAAGGTGACCACAGAT
GGGAGCAATAGCCAATGTGTGGTAGTACCAGTGACTTCCAAAGAGTTAGC
ATTACTTGACAATCTTGTTTTGAGCGTTCAATGGATCCAAGCAATGATAC
TTTTGACTTTCTTGATCTGGTTTGTAATGTGTTTGCTGTATGTCATGTTC
ACATGCAGAGTGACTCCTAAATCCTTCACGTCCATCTTGGTTTCGATAGG
AGAGCCAGTGTCTGAGAGGTAACTTGAGAATTATTTTAGTTCTTCATTTT
TTCCGTATTTAAGATGTTCAAACTTCAAGCCATTGAGCTNTTTAGTACCA
ATACCAATCTGACAAATTTGAGTTTAAAGCTGTTTAAAGGGAACCCACCC
CCTCCCACACAAACAGGGTACTAAGAGAAACTTCAAAAAACCTCATTTTT
GAAATACTCTTTCTTCAACACAACACAAAAAATGTCATATGCTAAAATAG
AAAATGACTGAAAACTGACAATATATAATAAAAACAAACCCAATGAAGCT
AGCAAAATCAATCTGAATCAATATTATCTGAATATAATTGATGTGCAAAA
GCTATTATTATTATTACATAATTTTAGAACAGAATAGATTCACTCATTAC
CAAATGCTATCACAGAAAAAATGCTTTTCCTTCAGGCTTGATCAAAAATA
AAACTTGAAAATATCGATAAAGTCCAAAATAAACAAACTTCAAAGTCTTT
AAACTTATTACTCATTTACAGTCATTATACTCAAAAGCTCAAAATCCAAT
TGAAACCTGTTTAGACTGATATGTACCCCGGGGTATTTTCTAGCTATAAG
GGCAAAAATTAGGAAAGTTTTGCTGTCATTTTGATATGGATACCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCCACCCCC
ATCAATACCAACTTGACTTTTCAGACTTTTAAAGGAAAAAAGACACCACC
ACCCGGCTATGGGTCTGGTATCTGGATGTTGACCCCCCCTGCTTCATCAA
ACATGATGTATCGTGGGCAAATGAAGATAGAAATGAATGTAGGATGTTAG
TGTCAATATCTTGGATCAAGGTTCAAAAGGTCAAAACTTTCCAGCCTGTG
CTCTCTGTCATCTGTCTCTTCTTTTTTCCATTATATTAATAAAATAACTG
GAGCTCCAAATGGTCTAAAACAACTTTCACTTTCGATTTATTTGGCATCT
ACGGTGGAGTTCTTCAGCTGATCGGAGTTGAACAATAGAGTATCCCGAGC
CGTACTCCGGGCTATCCGAAGCCGGGTATTGAATGATGTCCTACTCCGGT
TGGAACATCTTCCTTCTAGGGAAACCCCAAGTTGAATGTATTTTCTGCGG
GAAAATACGCGACTTCCGACTGCCCTTGTTTAGTTACAGCTACAACCGCT
AGACACAGGGAACGTACGTGGGTTTTCAGCTTCTAAACTTCAGTGTAAGT
CCAGGGGTTTTTCCAACACTGCACAATGCCTCTGTTTGTACTTCTAAATT
GATTTTTAGACAGGTGTAAGCGGTGATATTTAGCTAAAGGCTGAATTTTA
TACCGTGAAGTCGGGTAACTTGCATCAGTAGAGGGAAACTTGCATAGCCT
AATTTTTGGCGTATGACGTATGTAGGACATAAAAGTAGGACGCTCTGATC
AACCAACAAGGTACTTTTGAAAGCTAAACTATTGCATGGGAAAATGCAAA
AACATTCAGGTAGATAGATACCTGTCTTCAGTGGCTAGCGCTTTTGATTT
TAGTATCCCTGACAAACATGAAGTTTGAAAAGGCGCACTTGCGAGTACTC
ATTTTCAAATTTTGAAAGAATGAAAAGACATACCTTGATAATTTTTTTTG
CAAAAGAAAGCTGATAAATTCTCTTGAAATTGGAAATAGCACTTATGCTA
AAAAACGTTTCCTTTCTGGAGTTATGTAAGTTTGAAGATTTTATTTCAAA
AATCCTGTTTTTGAAAATAAAGAGAATTTACATAGCTTTCTTCTAAAAAG
AATTTTCCAAAATATTAAGGAGAATCCAATGCGCGGTCTATCATATTTTG
TCTACAGAACTGAAAAATTTTCTAGGTACGCTTACACAAATAATGATAAC
AAGTGATGCATTTTGTCTACCGTCATAAATTTTTCTGCATACTTTCACCA
TGTGATACTCCTTTAGGCATATGCGACAGTCTATTGCACAACTAATTACT
CTACACTTCAGTGGATGCAAGCAAAACAAACAGGAAATTAGATAATATGT
ATACAGCCATTCTAATTTGCGTCGGCATTCGGCTATTGCAGACGCAAATG
CCGACGTAAATTTAGCTATTGCCAACGTAAAAGTGCTTACTGTACTATAG
AACCCAGAATTATTTGCCAACACAAATAAATCTGAATTAGAAAGGCTCTG
TATAAATAAGTTTTGTTCAAATTGGCATGCTAACTTTCTCCCGATTTAGC
ATGCGATAATGCTGCAAATTTTCTTTCCGAAGTCTTATAAAGTATTAGCT
CCAGTATTAGGGTTTTGTTTCCGTAAATGTACAAAGCAGAGTAGCCTTAA
CGTAGTCGTCTAAAGAAACGACTATTCTTTTTTAGAATCAACCTTACAAT
CTAGTTTTTATATTTATAAAAACTAGATTGCTGACGTGTGAAAAGGAATG
TCGGCGTGAATGATCCTTTTGTTTCGATAATAACATAAAAGCTCTTTCCT
TTTTCTTTCTCATAACTTCAAGCTTTCCCTCAGACTCTCCCAAGCGCGGT
TAGCTCAAGTGGTTAGAGCATCTGTCTCATAAGCATGGGTTTCCGAGTTC
AATCCCTCTGGGTGTCAAATTTTTCAATTCTTGATTTTTGTTTTTTCACA
CACAGACTTAACTGTCTTGTCATTGTTGGACCTTTTTTTTTTATCAGTTC
GGGCTCTGCCTTGCGGGGCGATTATACGAAGCAGATAATTTCCGGCCCAA
ATGGATGGAGTGATTTAATATACAGAACTGAGTTAATAGGTCATTGGCAA
TGAATTCTGACTTAAATGTGGGTTCAGTTCCCTTTGGAGGGTTGGTTTCT
TTGGTAATAATTGAATATTATTGTGTAACATAAAAATATTTGTAAAATAT
ATAGTGTTACCAACTTTTCTCAGGATTGATTCATAGGAATTTTTTGGGCA
AATTTGGCCCAAAAAACGGCTAAAAAACAGGTTTTTTGGACTTTGTGAAA
AAATTGGATCATTAATTTTTTCTGATTTTTTGTATGAAAGTAGGGTACCA
TCATAGGTAAAAGATGGCTCAAGCAGATTTTTGGAAAAAAAATTTTGTTG
GCCTAAATAACGCACGTTTATCTATAAGAATCACTATTAATAAGCATACA
TCAATGTTCTTAGTCAAATTACTCAATTTTTTTATGAGATAGATGTCTTT
TTTGCTCATGAGTGCTTACTTTTGAAGAATATGTGTGTTTAGACTGGAAA
TTTTGGTTGCTTGGCGTGTTCTTATAGAAAAACTGGCCAAATTCGATATT
TTTTTATAAGCACATTATCAATTACTTAGATAATAGCTTTTCTCAAGATT
GGCTCTTTCATTCTTTATGATATTTTGCACAAAGATGCATAACAATAAAC
CTTCGAATGTGACGGAGACCAATTTTTAAAAAAGGATGTTTTTGGGCAAA
TTTGGGCCAAAAAACGGCTAAAATACGTGTTTTTTGGACTTTGTGAAATA
TTGGATCATTGTTTTGTTCTGATTTTCTGCATTTAAGTAGGTAAAAGATG
GCTCAAGCTGATTTTTGTAAAAAAAGAATTTTTCAGCTCAAAAAGCGCAT
CTTTATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGCC
GAATTACAAAATTTATTGATGAGATAGATGTTTTTTTTGCTCACAAAGTC
TTAAATATGAACAAATATTTCAAGAGCATGGAATTTTGGTTTCTAAACGT
TTTTTTTATAAGAAACAAACGATTAATTTTAATAGATCGTCACTATTTGT
GCTCTGAATGATTGTTTAATGGTCACGCCACGTAGATATCAATTATAAAT
GTGTTAATATGCATAACCAGGTAGGTCCATAAAAGTATCAGTATCACTTG
ATTTTGAAGAAAAACAACTTGGGAAAGGTTGAAATAAGTCAAAAAAAGGT
TCTAAGACCCATTTTCAAGAAGATTCTTGAAATGGAGGAAAAAATGTTAA
GGGTAAAGAATAACCATAAATTTGTGTAATACCAACATACCTTGTCTAAT
TCCGTCATAGCAACTATCTGTTCTGCAAAGTAGTTTAAGTGATTTTTTAC
TTAAAAGCTCACTTAAAAGGTTTTAACTATTATAGACATTTAAAAGCAGT
GATCGAAATAGCAGTTGGTTATCAGTACAAGAAAAAAAATCAGTTAACCG
ACCAATATTTGAGTGACTTAAACTAATCTTGACGTTCTGTTATTCATGGA
CTATCTATTTTATTACTAGTTCCTTGGTAGTAATTTTCCATGACTGATTC
ACTAAAATAACCAACCAGAAGGAAAACCTCATTTCTACCACTGAAAACTT
CAGATAGGCATTACACGAAATTATAGAAGTTTTTCTGAAAGGAGAAACCC
CACACCAAAAGAAATTTCACATCGGCCAAAATAGGAACTTTTTGAATTTT
CCCCAGGCTCAGGGAAAAATGGAAACTTTTTATAATTTTCCTCAGGAATC
TACAGCTCTAATTGGCTGGAAAATAATTAATCTTATTCATGCAAAATGGT
TGAAGAACAGTTAAATGAAAGTTTTTTGGCTATTCACACATTTTCATAAG
GTTGGGTGAAAAAGTGTCAATTTTACCAATAGAAAGGTGTAAATGCCGAT
TGAGTTGAATGGGAGTCAACATAAGTCACGAACGACACTTTAGTTAAAAC
TGAGCCATAGGTTTTCTTTGACACATCTTCCTGGTGGAAAATGGCTAAAA
ATGAATAAAATAACACGTTTAGCTAACGAAATACGAAAAACAAATAAAGT
ACAAGTCAAGATATAAAGAGATACATAAGTTAGATTACAAAGACAACATA
AAGATATAACATATAAAGAAGAAAATATAGACACTTACTAAAAACACTGT
GGCTGAACACACACGTACGCTTCGTCAGATATTTTCAACTAACATTCACA
ATTCCAACACACAGATTTATAACACATCACAACAACTCGTACAACAACTA
GACAATCCTCAAGGGACTAACACATCATAACTATGCACACGATAAGGGCC
CTATACAATACAATACGCAACTCCCTAGACACATAATATAGACAATACAC
GTGGGACTAATACAAATTATATAGAAATCATTTACAGTTTCACTACTAAA
GTCCTATCAAATAATAAATCTAAGTACAAAGGAAACAATGAAAACAAACG
TAAAACTAAAAGACAAATTAGCTGCATTTTGGCAGTTACAAAAGGATTTC
ATGAATATACAGTACTAAAAAAACTTTTTTTGCACAAAGGTGCACATTGA
CAATGTCAAATATGTTAGGAAGTCTGATTTTTCTGGAAAATATTTTGGTT
CTTGATTTCAGACTTTCTTGGTACTTCTTTCCTTCTTTACGATTTTTTTT
AATTAAAAAAATTGATGCTCAAAATGTAATTGGGCCCTGATTTGGTTTAA
ATTTCTTTTACTGTCAAAATAACTGGACTTTTGAATTTTTCATGCTTTCC
ATCTTTTGTTTTTTCTTTGTAGTTTTTTTTATTGTTCTATTTTTAGATTG
CTTTTTAAGGATATTTTGCATTGCTTTAAAACTAATTTTATTTTTTTCTA
TTTTGTCAAGCTTTAGTAATCATCAGAAAGGTCCAATCAGCATTCCAGGG
ATCTTGCTTGCCAAAAAGTGTGATGCATTTTCTAACTCTTATTTGGATGT
ATGTATTTCAGCTTATCATTTGTTATTTTACATCTTTTTTAATAATCTGT
CATATTTTTCCTCAGGTACAATCCAGAAAATTTGGCTCCCCTGGAGGATT
ATGTCAAAATGCAGGTAATTTGATGATTTTTAGTTTACTACAACAGGGGG
GGTCGGTAGTAAAATCTCAGACATAATGACGTTTACTACGGTGGTGGTGT
GACGAAAAATCGAAAAAAAATTTTACTACCCAGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCTTCCAAGAGTCTGGGTGGTGGTATGTAAAAA
TTCGTAAAAATCCTTTTACTACTCATATATGTCTGAGATTTTACTACCGA
CCCCCCCTGACTACAATAATTTTTGTAATATTTCATTTAATTTCAACTTA
TTTTGTGAAAATAAACGCAGACATTAACGATTGTCAGCAAAAGAGAGAGT
CAGATCAGACAAAAACAATCTCAATCAGACATTATATTCTAAATTTTCAT
TTGTTATCTTTTGTTACTAGGCTATGAAACAAACATATAATTTGGATGCA
AATTTAGCTGTCCTTAAATTGTAAGAATTTGTTGTTGTTTGCTTTCTACT
CTTCTGATGATTTTAATATAATCACCCATTTTTAGAATAATTTTACAAGT
AACAAGGAGAAAAATGTAATTTTCACAGTTTGTAGGACAAAATTTGTTAG
GTTGATAATCATTTACTTTTTTTAACTTAAAATCTAAGATATCAATTCAA
TCCACAAATGTTCAAAGAAGATATCACTTGTCAGATTCTGTTGCAAGCTC
TGATGAATCTACCAAACACAAATTTCACCCTATGCAAATGTCTGATGATA
GAACAACATGTATCTTTTCAAAGAATTTTCACAAAGTCTTTATTTTAACA
TGTAAACACTTACCCATTTTACTATGTAGGCTTGACTAAGAGTTCCCTTA
TATAGCAAGATATTTAGGAAGANTTTTACTATGTAGGCTTGACTAAGAGT
TCCCTTATATAGCAAGATATTTAGGAAGAGTAATGCAATGCTGAAGCTAA
GAGAGATTAAAAAAGCTTTGATTTCCAAGGAGGAAAAGTTGTCTACAATC
TTTCACTTCTGTAATTCTANAGTAATGCAATGCTGAAGCTAAGAGAGATT
AAAAAAGCTTTGATTTCCAAGGAGGAAAAGTTGTCTACAATCTTTCACTT
CTGTAATTCTATTTGTTCATATTTTCTTTAACCTTCATCTTCTGAAATTT
AGCAATCAATGGAAAATGTCAATAAAGTTATAGAATTATCAAATTTATTA
GAAACTTGTGAGTTCCAGCAATTTTGGGTAAGACATTTCATTATAAGCTT
TGTATGAGGACATCTGATCTCTAGGGAAGACTCTTTCTTGCGGAAAATGA
CCGTTTCAAAGTTTTGTTGAATAGCTATTTATTTGACCTTTTTTTTTCTT
CCTTTTCGCTTCTTCTTTTTGACAGTTTTCACCAGGTAGGTCAAATCAGT
ATCCAGCTTGTTTTCATAGATACAATGAATTTAGCTATTGCAGTAGCTCA
AACATGCATTAAAGATGTTTTTCAAACAGTTTCTTTTAGTCAAATAATAT
ACGTTTTATATCTATGTTGTTGGTGCACTTAACATCCTTAGCAAATCTTT
TTTAAACAGTTAGCTAAATTTTGCAATCCTGTTTTTTTTTCAGCAAGAGT
TAAAAACATGCACAGAACTGATTGAGGGAATAAAAGGATTTAAGGAGTCC
ATAAAAAGCTGTAAGTTATTGTATTTTGTATTTCTTAAAACTCGATTCTT
TCACAAGTTCGAAATGAAGCTAATAAACTTAGCTTTGGTGTAATCTAATT
CTTAATGGAAGCCTTTCTTCTTTTTCTAGTCATTGCTTCGGTTCTAAACA
TCACATACCAAAATATTGATAAAAATCTACTCAAAGAAATACTTGGGGGT
ATTGAAGGTAAACTTGTCTTTGAAATTTATATTTCCTTATTCAAAACAAA
CATTNTATTGATAAAAATCTACTCAAAGAAATACTTGGGGGTATTGAAGG
TAAACTTGTCTTTGAAATTTATATTTCCTTATTCAAAACAAACATTTTAC
TACAGTTGTCCGTTATTACTCAATAAATTGGTTTTGTCATTTCATAAATT
TCTAGAAAGCTACCACTACTTTTAACTTCCTCATTTGTGTGAATTTCAAA
AAAGTTGTCAAGTCACTCTTATAATAAATCATCCTAAAGAGAATTATGTC
AATGTAATCAAAAACTTCATGTTAAGCTATTTATTATAATGGTCATTTCG
GTTAATTACCTCTTAATTACCACGTTGTGAACATGAAAGTACACATACTA
ATTTTATTTTATTAGACGAGGATTTGGCTGAGTTCTGTAAAGATAACGAT
TGGAAGATAGATGGGGAGTTTGTTTCCATTAGAAATCAAGACGCACATGT
CAAATCGAAAAATATTAGTGAGAAAATCACTTTCGAAAGTAAGAAATACC
TTAGTTTACAATTGGTTTGCTTTGCTTCTTCTGTTTTCTGTTTACTGCGT
TTAAAGCTGGATGTATTAAATGGTTGTAAAAATTAGTCTGTCACACAAGT
GAAACATTATCACAGACTGGGCAAATTCTTTTAATGTGTAGAAAATTTAT
ACAACAAGAAAATGTGTTACCTCTATATTATAGTTCAATTTAATTTCAAA
GGACTAAATTTATTATACGAATTGACTTTTTTCCTTGTTTACTCTAACCC
AGGGGGAGGGGAGGTTATCCACTCAATGTACTTACCCATAGGAAGGGTGG
GTGGTGTATTTTCAAGTTAAATTTGAGTAAGTACAGTGTACCAAAGAGAT
CCAAAAAGGTTGTACCAAAACTCCAGTCATCAAATTAAGTGCGGGTGTAC
TAAAAGGAACCATCGAATCTCATCTGGCGGTGGAAAAAAGTTAGTACAGT
GCTGTACAGTGTACTAAAAGTAGTCTAATTTTTTTGAAAACAAATCTAAA
AATCTAATTTGCAGTTGGTACCCCTTGTCTAAGCCAGCCTCATTACGCTT
TTAAGGGTTGATAGAAAATGACTGTCAATCTTTTGTTTCTATTTCATTTT
AGACGTGNTTACGCTTTTAAGGGTTGATAGAAAATGACTGTCAATCTTTT
GTTTCTATTTCATTTTAGACGTGTCACCGATCATCAAGACTTGTACAAGA
TAATTCTTTTGATTTTATCATTAGCTAATTATTTAACACTTTCTTCTACA
TGAAAAACAGACTGTAAAAACTCCCTTCCTATTTGTTGTTCAATTATT

Coding sequence (CDS) from alignment at sc0000742:113857..126904-

>TCONS_00029342 ID=TCONS_00029342|Name=TCONS_00029342|organism=Clytia hemisphaerica|type=CDS|length=5886bp|location=Sequence derived from alignment at sc0000742:113857..126904- (Clytia hemisphaerica)
ACGTGTCACCGATCATCAAGACTTGTACAAGATAAACGAGGATTTGGCTG
AGTTCTGTAAAGATAACGATTGGAAGATAGATGGGGAGTTTGTTTCCATT
AGAAATCAAGACGCACATGTCAAATCGAAAAATATTAGTGAGAAAATCAC
TTTCGAAATCATTGCTTCGGTTCTAAACATCACATACCAAAATATTGATA
AAAATCTACTCAAAGAAATACTTGGGGGTATTGAAGCAAGAGTTAAAAAC
ATGCACAGAACTGATTGAGGGAATAAAAGGATTTAAGGAGTCCATAAAAA
GCTCAATCAATGGAAAATGTCAATAAAGTTATAGAATTATCAAATTTATT
AGAAACTTGTGAGTTCCAGCAATTTTGGATATCAATTCAATCCACAAATG
TTCAAAGAAGATATCACTTGTCAGATTCTGTTGCAAGCTCTGATGAATCT
ACCAAACACAAATTTCACCCTATGCAAATGTCTGATGATAGAACAACATG
CTATGAAACAAACATATAATTTGGATGCAAATTTAGCTGTCCTTAAATTG
TACAATCCAGAAAATTTGGCTCCCCTGGAGGATTATGTCAAAATGCAGAT
GACTGACCTAATGAAAGAAGAAGGTGTTGCTGCACTCTTAAAAGGAATCG
ATAGACGTGTCACCGATCATCAAGACTTGTACAAGATAAACGAGGATTTG
GCTGAGTTCTGTAAAGATAACGATTGGAAGATAGATGGGGAGTTTGTTTC
CATTAGAAATCAAGACGCACATGTCAAATCGAAAAATATTAGTGAGAAAA
TCACTTTCGAAATCATTGCTTCGGTTCTAAACATCACATACCAAAATATT
GATAAAAATCTACTCAAAGAAATACTTGGGGGTATTGAAGCAAGAGTTAA
AAACATGCACAGAACTGATTGAGGGAATAAAAGGATTTAAGGAGTCCATA
AAAAGCTCAATCAATGGAAAATGTCAATAAAGTTATAGAATTATCAAATT
TATTAGAAACTTGTGAGTTCCAGCAATTTTGGATATCAATTCAATCCACA
AATGTTCAAAGAAGATATCACTTGTCAGATTCTGTTGCAAGCTCTGATGA
ATCTACCAAACACAAATTTCACCCTATGCAAATGTCTGATGATAGAACAA
CATGCTATGAAACAAACATATAATTTGGATGCAAATTTAGCTGTCCTTAA
ATTGTACAATCCAGAAAATTTGGCTCCCCTGGAGGATTATGTCAAAATGC
AGATGACTGACCTAATGAAAGAAGAAGGTGTTGCTGCACTCTTAAAAGGA
ATCGATAGACGTGTCACCGATCATCAAGACTTGTACAAGATAAACGAGGA
TTTGGCTGAGTTCTGTAAAGATAACGATTGGAAGATAGATGGGGAGTTTG
TTTCCATTAGAAATCAAGACGCACATGTCAAATCGAAAAATATTAGTGAG
AAAATCACTTTCGAAATCATTGCTTCGGTTCTAAACATCACATACCAAAA
TATTGATAAAAATCTACTCAAAGAAATACTTGGGGGTATTGAAGCAAGAG
TTAAAAACATGCACAGAACTGATTGAGGGAATAAAAGGATTTAAGGAGTC
CATAAAAAGCTCAATCAATGGAAAATGTCAATAAAGTTATAGAATTATCA
AATTTATTAGAAACTTGTGAGTTCCAGCAATTTTGGATATCAATTCAATC
CACAAATGTTCAAAGAAGATATCACTTGTCAGATTCTGTTGCAAGCTCTG
ATGAATCTACCAAACACAAATTTCACCCTATGCAAATGTCTGATGATAGA
ACAACATGCTATGAAACAAACATATAATTTGGATGCAAATTTAGCTGTCC
TTAAATTGTACAATCCAGAAAATTTGGCTCCCCTGGAGGATTATGTCAAA
ATGCAGATGACTGACCTAATGAAAGAAGAAGGTGTTGCTGCACTCTTAAA
AGGAATCGATAGACGTGTCACCGATCATCAAGACTTGTACAAGATAAACG
AGGATTTGGCTGAGTTCTGTAAAGATAACGATTGGAAGATAGATGGGGAG
TTTGTTTCCATTAGAAATCAAGACGCACATGTCAAATCGAAAAATATTAG
TGAGAAAATCACTTTCGAAATCATTGCTTCGGTTCTAAACATCACATACC
AAAATATTGATAAAAATCTACTCAAAGAAATACTTGGGGGTATTGAAGCA
AGAGTTAAAAACATGCACAGAACTGATTGAGGGAATAAAAGGATTTAAGG
AGTCCATAAAAAGCTCAATCAATGGAAAATGTCAATAAAGTTATAGAATT
ATCAAATTTATTAGAAACTTGTGAGTTCCAGCAATTTTGGATATCAATTC
AATCCACAAATGTTCAAAGAAGATATCACTTGTCAGATTCTGTTGCAAGC
TCTGATGAATCTACCAAACACAAATTTCACCCTATGCAAATGTCTGATGA
TAGAACAACATGCTATGAAACAAACATATAATTTGGATGCAAATTTAGCT
GTCCTTAAATTGTACAATCCAGAAAATTTGGCTCCCCTGGAGGATTATGT
CAAAATGCAGATGACTGACCTAATGAAAGAAGAAGGTGTTGCTGCACTCT
TAAAAGGAATCGATAGACGTGTCACCGATCATCAAGACTTGTACAAGATA
AACGAGGATTTGGCTGAGTTCTGTAAAGATAACGATTGGAAGATAGATGG
GGAGTTTGTTTCCATTAGAAATCAAGACGCACATGTCAAATCGAAAAATA
TTAGTGAGAAAATCACTTTCGAAATCATTGCTTCGGTTCTAAACATCACA
TACCAAAATATTGATAAAAATCTACTCAAAGAAATACTTGGGGGTATTGA
AGCAAGAGTTAAAAACATGCACAGAACTGATTGAGGGAATAAAAGGATTT
AAGGAGTCCATAAAAAGCTCAATCAATGGAAAATGTCAATAAAGTTATAG
AATTATCAAATTTATTAGAAACTTGTGAGTTCCAGCAATTTTGGATATCA
ATTCAATCCACAAATGTTCAAAGAAGATATCACTTGTCAGATTCTGTTGC
AAGCTCTGATGAATCTACCAAACACAAATTTCACCCTATGCAAATGTCTG
ATGATAGAACAACATGCTATGAAACAAACATATAATTTGGATGCAAATTT
AGCTGTCCTTAAATTGTACAATCCAGAAAATTTGGCTCCCCTGGAGGATT
ATGTCAAAATGCAGATGACTGACCTAATGAAAGAAGAAGGTGTTGCTGCA
CTCTTAAAAGGAATCGATAGACGTGTCACCGATCATCAAGACTTGTACAA
GATAAACGAGGATTTGGCTGAGTTCTGTAAAGATAACGATTGGAAGATAG
ATGGGGAGTTTGTTTCCATTAGAAATCAAGACGCACATGTCAAATCGAAA
AATATTAGTGAGAAAATCACTTTCGAAATCATTGCTTCGGTTCTAAACAT
CACATACCAAAATATTGATAAAAATCTACTCAAAGAAATACTTGGGGGTA
TTGAAGCAAGAGTTAAAAACATGCACAGAACTGATTGAGGGAATAAAAGG
ATTTAAGGAGTCCATAAAAAGCTCAATCAATGGAAAATGTCAATAAAGTT
ATAGAATTATCAAATTTATTAGAAACTTGTGAGTTCCAGCAATTTTGGAT
ATCAATTCAATCCACAAATGTTCAAAGAAGATATCACTTGTCAGATTCTG
TTGCAAGCTCTGATGAATCTACCAAACACAAATTTCACCCTATGCAAATG
TCTGATGATAGAACAACATGCTATGAAACAAACATATAATTTGGATGCAA
ATTTAGCTGTCCTTAAATTGTACAATCCAGAAAATTTGGCTCCCCTGGAG
GATTATGTCAAAATGCAGATGACTGACCTAATGAAAGAAGAAGGTGTTGC
TGCACTCTTAAAAGGAATCGATAGACGTGTCACCGATCATCAAGACTTGT
ACAAGATAAACGAGGATTTGGCTGAGTTCTGTAAAGATAACGATTGGAAG
ATAGATGGGGAGTTTGTTTCCATTAGAAATCAAGACGCACATGTCAAATC
GAAAAATATTAGTGAGAAAATCACTTTCGAAATCATTGCTTCGGTTCTAA
ACATCACATACCAAAATATTGATAAAAATCTACTCAAAGAAATACTTGGG
GGTATTGAAGCAAGAGTTAAAAACATGCACAGAACTGATTGAGGGAATAA
AAGGATTTAAGGAGTCCATAAAAAGCTCAATCAATGGAAAATGTCAATAA
AGTTATAGAATTATCAAATTTATTAGAAACTTGTGAGTTCCAGCAATTTT
GGATATCAATTCAATCCACAAATGTTCAAAGAAGATATCACTTGTCAGAT
TCTGTTGCAAGCTCTGATGAATCTACCAAACACAAATTTCACCCTATGCA
AATGTCTGATGATAGAACAACATGCTATGAAACAAACATATAATTTGGAT
GCAAATTTAGCTGTCCTTAAATTGTACAATCCAGAAAATTTGGCTCCCCT
GGAGGATTATGTCAAAATGCAGATGACTGACCTAATGAAAGAAGAAGGTG
TTGCTGCACTCTTAAAAGGAATCGATAGACGTGTCACCGATCATCAAGAC
TTGTACAAGATAAACGAGGATTTGGCTGAGTTCTGTAAAGATAACGATTG
GAAGATAGATGGGGAGTTTGTTTCCATTAGAAATCAAGACGCACATGTCA
AATCGAAAAATATTAGTGAGAAAATCACTTTCGAAATCATTGCTTCGGTT
CTAAACATCACATACCAAAATATTGATAAAAATCTACTCAAAGAAATACT
TGGGGGTATTGAAGCAAGAGTTAAAAACATGCACAGAACTGATTGAGGGA
ATAAAAGGATTTAAGGAGTCCATAAAAAGCTCAATCAATGGAAAATGTCA
ATAAAGTTATAGAATTATCAAATTTATTAGAAACTTGTGAGTTCCAGCAA
TTTTGGATATCAATTCAATCCACAAATGTTCAAAGAAGATATCACTTGTC
AGATTCTGTTGCAAGCTCTGATGAATCTACCAAACACAAATTTCACCCTA
TGCAAATGTCTGATGATAGAACAACATGCTATGAAACAAACATATAATTT
GGATGCAAATTTAGCTGTCCTTAAATTGTACAATCCAGAAAATTTGGCTC
CCCTGGAGGATTATGTCAAAATGCAGATGACTGACCTAATGAAAGAAGAA
GGTGTTGCTGCACTCTTAAAAGGAATCGATAGACGTGTCACCGATCATCA
AGACTTGTACAAGATAAACGAGGATTTGGCTGAGTTCTGTAAAGATAACG
ATTGGAAGATAGATGGGGAGTTTGTTTCCATTAGAAATCAAGACGCACAT
GTCAAATCGAAAAATATTAGTGAGAAAATCACTTTCGAAATCATTGCTTC
GGTTCTAAACATCACATACCAAAATATTGATAAAAATCTACTCAAAGAAA
TACTTGGGGGTATTGAAGCAAGAGTTAAAAACATGCACAGAACTGATTGA
GGGAATAAAAGGATTTAAGGAGTCCATAAAAAGCTCAATCAATGGAAAAT
GTCAATAAAGTTATAGAATTATCAAATTTATTAGAAACTTGTGAGTTCCA
GCAATTTTGGATATCAATTCAATCCACAAATGTTCAAAGAAGATATCACT
TGTCAGATTCTGTTGCAAGCTCTGATGAATCTACCAAACACAAATTTCAC
CCTATGCAAATGTCTGATGATAGAACAACATGCTATGAAACAAACATATA
ATTTGGATGCAAATTTAGCTGTCCTTAAATTGTACAATCCAGAAAATTTG
GCTCCCCTGGAGGATTATGTCAAAATGCAGATGACTGACCTAATGAAAGA
AGAAGGTGTTGCTGCACTCTTAAAAGGAATCGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016735XLOC_016735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029342-exon-sc0000742-1575043694:126221..126904TCONS_00029342-exon-sc0000742-1575043694:126221..126904Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1575043694:117141..117189TCONS_00029342-exon-sc0000742-1575043694:117141..117189Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1575043694:116585..116634TCONS_00029342-exon-sc0000742-1575043694:116585..116634Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1575043694:116296..116416TCONS_00029342-exon-sc0000742-1575043694:116296..116416Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1575043694:115828..115902TCONS_00029342-exon-sc0000742-1575043694:115828..115902Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1575043694:115395..115461TCONS_00029342-exon-sc0000742-1575043694:115395..115461Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1575043694:115198..115275TCONS_00029342-exon-sc0000742-1575043694:115198..115275Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1575043694:114667..114789TCONS_00029342-exon-sc0000742-1575043694:114667..114789Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1575043694:113857..113986TCONS_00029342-exon-sc0000742-1575043694:113857..113986Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1510915933:126221..126904TCONS_00029342-exon-sc0000742-1510915933:126221..126904Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1510915933:117141..117189TCONS_00029342-exon-sc0000742-1510915933:117141..117189Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1510915933:116585..116634TCONS_00029342-exon-sc0000742-1510915933:116585..116634Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1510915933:116296..116416TCONS_00029342-exon-sc0000742-1510915933:116296..116416Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1510915933:115828..115902TCONS_00029342-exon-sc0000742-1510915933:115828..115902Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1510915933:115395..115461TCONS_00029342-exon-sc0000742-1510915933:115395..115461Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1510915933:115198..115275TCONS_00029342-exon-sc0000742-1510915933:115198..115275Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1510915933:114667..114789TCONS_00029342-exon-sc0000742-1510915933:114667..114789Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1510915933:113857..113986TCONS_00029342-exon-sc0000742-1510915933:113857..113986Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1491911889:126221..126904TCONS_00029342-exon-sc0000742-1491911889:126221..126904Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1491911889:117141..117189TCONS_00029342-exon-sc0000742-1491911889:117141..117189Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1491911889:116585..116634TCONS_00029342-exon-sc0000742-1491911889:116585..116634Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1491911889:116296..116416TCONS_00029342-exon-sc0000742-1491911889:116296..116416Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1491911889:115828..115902TCONS_00029342-exon-sc0000742-1491911889:115828..115902Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1491911889:115395..115461TCONS_00029342-exon-sc0000742-1491911889:115395..115461Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1491911889:115198..115275TCONS_00029342-exon-sc0000742-1491911889:115198..115275Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1491911889:114667..114789TCONS_00029342-exon-sc0000742-1491911889:114667..114789Clytia hemisphaericaexon
TCONS_00029342-exon-sc0000742-1491911889:113857..113986TCONS_00029342-exon-sc0000742-1491911889:113857..113986Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029342-proteinTCONS_00029342-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000742supercontigsc0000742:113857..126904 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
213.763	214.023	134.807	113.121	120.47	91.021	140.039	146.056	151.734	130.052	167.224	163.898	143.227	154.399	134.395	138.813	129.836	144.343	70.7776	73.5327	138.467	135.497	137.308	130.854	132.568	159.265	125.33	126.064	104.402	94.5181
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR016020Transl_init_fac_sub12_N_euk
IPR033464CSN8_PSD8_EIF3K
IPR009374eIF3k
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0043022ribosome binding
GO:0003743translation initiation factor activity
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006446regulation of translational initiation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
molecular_function GO:0005488 binding
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003743 translation initiation factor activity
Blast
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BLAST of TCONS_00029342 vs. Swiss-Prot (Human)
Match: EIF3K (Eukaryotic translation initiation factor 3 subunit K OS=Homo sapiens GN=EIF3K PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.035e-66
Identity = 107/207 (51.69%), Postives = 145/207 (70.05%), Query Frame = 2 
Query:  656 VAALLKGIDRYNPENLAPLEDYVKMQAMKQTYNLDANLAVLKLYQFNPQMFKEDITCQILLQALMNLPNTNFTLCKCLMIEQHQSMENVNKVIELSNLLETCEFQQFWQELKTCTELIEGIKGFKESIKSFIASVLNITYQNIDKNLLKEILGGIEDEDLAEFCKDNDWKID--GEFVSIRNQDAHVKSKNISEKITFENVSPIIKT 1270
            V  LLKGIDRYNPENLA LE YV+ QA +  Y+L+ANLAVLKLYQFNP  F+  +T QILL+AL NLP+T+FTLCKC++ + HQ    + +++ L +LLETC FQ FWQ L    +L+EGI GF++S++ FI  V+ ITYQ+ID+ LL E+LG + D  L  +     W  D  G+ + I +Q+  +K KNI EKI F++VS I+ +
Sbjct:   11 VGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQ-IFICSQEESIKPKNIVEKIDFDSVSSIMAS 216
The following BLAST results are available for this feature:
BLAST of TCONS_00029342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF3K1.035e-6651.69Eukaryotic translation initiation factor 3 subunit... [more]
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