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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029339 ID=TCONS_00029339|Name=TCONS_00029339|organism=Clytia hemisphaerica|type=transcript|length=1084bp
caatttttttggtatttcaggTATGCTTGGGGATGTGCGTAGCCTACCCA
AAACTcaggaaaaaagtaaaaagagcATTAAGACTGACAGATTGATATTT
CCtctctttttttgcttttaggTGTCTTTTTCAGAAAGCATACCAAAAGG
ATTGCAATCGATTTGAAACTTGTTGGTTGGGTCATGAATACAAATGAAAA
CACAGTCGTTGGATGTGTTCAAGGTCCTTTAGAAGACATCGATAAAATGA
AACGCTGGCTGAAATATGAAGGAAGTCCAAAATCAAGGATCGATAAATGT
ATCTTTAAAGATGAAAAAGAGGTTCAAAAATTTGATTATAAGGACTTTGT
TGTCAGAAAATAGATACATATTTATATTTTATTTATATTTTCATACACAT
AAATTTTTTGTTGTAAATAAGGTGTAcaaatataaaatattttgagttAA
AATGATACAAAAATTGTTAATGTTATTTTACTCTTAAATCTTGATAAATC
TTTGTGATGTGCTTATATTGACCTGTTGAAgaaaaaatcaatcaattacA
GACTTCTACAAGAACCCGTAATTCTTTCTCGGTAGTTTTTATTTACTGAG
ATTATCaagttttgagtttttttcttataaatttctgaaaatttaggcaa
aaattttcttaaactGTTATTGGTCAAATTCTAGACTTATGTTAATATTA
AAACTTTCTCAAAAAGAGTCTTTATCTATATAAATAGAAAGCttttaaaa
gaattattttcagAAGTAAGCCCAGCTGGCGCGTAAGACATAACCCTCTT
TCAACATTTGTCATCTGGATGTTGATGGAACGCGTTCCAGCTCAGATTTA
GTTTTAATTTGTAGCTTCAGCAATTCGTTTCATGATTATGTCTTTTTCTC
GTTGCTTCTTAGTTTCTTTGAGATGTGCAATTTCTTGACATTTGGTGTAA
AAACATAAATAGGCTGAAATGTACATCAATATTTCACCAACCCAAGCCAT
GATATAAGGAAATCTAAAGATAAAATCCGAAATTATTGATTGGCTTAGAT
TTAAAAGAATTATCGGAGTTGATACCAGGCTGAT Run BLAST on NCBI transcript from alignment at sc0000742:128145..130119+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029339 ID=TCONS_00029339|Name=TCONS_00029339|organism=Clytia hemisphaerica|type=transcript|length=1975bp|location=Sequence derived from alignment at sc0000742:128145..130119+ (Clytia hemisphaerica)
caatttttttggtatttcaggTATGCTTGGGGATGTGCGTAGCCTACCCA
AAACTcaggaaaaaagtaaaaagagcATTAAGACTGACAGATTGATATTT
CCtctctttttttgcttttaggTGTCTTTTTCAGAAAGGTAAGTCAATAT
GTATATTTTCAgtaagaaattaaaatttgaataaaagtgCTAAAATAGAC
AGCAAAACGTTTCAGGAGTTGCAAGCCTATTTTTCCAAGAATATTTATGT
GTGTATATACTAATTTTGCCCAAAATTGTAATTCATCGACTTAATTGGTT
TTATTCGAGATTTTTGTTTAGAAACAGGGGGTTATAAAAGCATTATGAAA
GTTTTCAGAAATGGCCTTTTGAGTAGTCTAATCAATCTTGATCAAAAGAC
GAAAAAAAGTACACGCTCTTAAAATACACCCTTGCCCTTGAACATCAAAA
TTTGACACtaaaaatattgcgttttaatAGTGTCATGCGCGAAATTTCAT
CCCCACGAacatttatcccattaaagtatataaTATGAAATAAGTCTGGA
CCCTAAtccgttttacaaaatttttaagTGGAAGTTTAAACAAATAACAC
TTCACGAATTGAAGAAGTTTTTCTTGCAAAATAATTTAACAGGTTCCTTT
GTTGAAGTTAATTCTCCCGAAATACAGAAATTTCACGAATTCGCCCAtag
taaaagtttttcttttaaaaagttatcATACAATTTGTAAATCATATTTC
AGCATACCAAAAGGATTGCAATCGATTTGAAACTTGTTGGTTGGGTCATG
AATACAAATGAAAACACAGTCGTTGGATGTGTTCAAGGTCCTTTAGAAGA
CATCGATAAAATGTAAGTAATTATTGATTGTCATTTTATGAACATAGGGG
GAGGggattgaaaaatcttcaaattttgataaacgGTAGCGATTACCGAT
AACTGCTTATGCAAAAACTGATTTCAAAGTTCCCAGGGTTATTTTCAGTT
GATTTTAGtctcatttttcaaaataaaatccagaaaattttttgcgattt
ttttttacttaatcTCCAAAAATACTTCTTAGTGGTCAATAAGTCTTACA
TTGTTACGTAGAGACTGTTTTATACACTTTTTGATTCAGGAAACGCTGGC
TGAAATATGAAGGAAGTCCAAAATCAAGGATCGATAAATGTATCTTTAAA
GATGAAAAAGAGGTTCAAAAATTTGATTATAAGGACTTTGTTGTCAGAAA
ATAGATACATATTTATATTTTATTTATATTTTCATACACATAAATTTTTT
GTTGTAAATAAGGTGTAcaaatataaaatattttgagttAAAATGATACA
AAAATTGTTAATGTTATTTTACTCTTAAATCTTGATAAATCTTTGTGATG
TGCTTATATTGACCTGTTGAAgaaaaaatcaatcaattacAGACTTCTAC
AAGAACCCGTAATTCTTTCTCGGTAGTTTTTATTTACTGAGATTATCaag
ttttgagtttttttcttataaatttctgaaaatttaggcaaaaattttct
taaactGTTATTGGTCAAATTCTAGACTTATGTTAATATTAAAACTTTCT
CAAAAAGAGTCTTTATCTATATAAATAGAAAGCttttaaaagaattattt
tcagAAGTAAGCCCAGCTGGCGCGTAAGACATAACCCTCTTTCAACATTT
GTCATCTGGATGTTGATGGAACGCGTTCCAGCTCAGATTTAGTTTTAATT
TGTAGCTTCAGCAATTCGTTTCATGATTATGTCTTTTTCTCGTTGCTTCT
TAGTTTCTTTGAGATGTGCAATTTCTTGACATTTGGTGTAAAAACATAAA
TAGGCTGAAATGTACATCAATATTTCACCAACCCAAGCCATGATATAAGG
AAATCTAAAGATAAAATCCGAAATTATTGATTGGCTTAGATTTAAAAGAA
TTATCGGAGTTGATACCAGGCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029339-exon-sc0000742-1491911889:128145..128282 | TCONS_00029339-exon-sc0000742-1491911889:128145..128282 | Clytia hemisphaerica | exon |
| TCONS_00029339-exon-sc0000742-1510915933:128145..128282 | TCONS_00029339-exon-sc0000742-1510915933:128145..128282 | Clytia hemisphaerica | exon |
| TCONS_00029339-exon-sc0000742-1575043694:128145..128282 | TCONS_00029339-exon-sc0000742-1575043694:128145..128282 | Clytia hemisphaerica | exon |
| TCONS_00029339-exon-sc0000742-1491911889:128897..129006 | TCONS_00029339-exon-sc0000742-1491911889:128897..129006 | Clytia hemisphaerica | exon |
| TCONS_00029339-exon-sc0000742-1510915933:128897..129006 | TCONS_00029339-exon-sc0000742-1510915933:128897..129006 | Clytia hemisphaerica | exon |
| TCONS_00029339-exon-sc0000742-1575043694:128897..129006 | TCONS_00029339-exon-sc0000742-1575043694:128897..129006 | Clytia hemisphaerica | exon |
| TCONS_00029339-exon-sc0000742-1491911889:129284..130119 | TCONS_00029339-exon-sc0000742-1491911889:129284..130119 | Clytia hemisphaerica | exon |
| TCONS_00029339-exon-sc0000742-1510915933:129284..130119 | TCONS_00029339-exon-sc0000742-1510915933:129284..130119 | Clytia hemisphaerica | exon |
| TCONS_00029339-exon-sc0000742-1575043694:129284..130119 | TCONS_00029339-exon-sc0000742-1575043694:129284..130119 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000742 | supercontig | sc0000742:128145..130119 + |
Blast
BLAST of TCONS_00029339 vs. Swiss-Prot (Human)
Match: ACYP1 (Acylphosphatase-1 OS=Homo sapiens GN=ACYP1 PE=1 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 1.148e-21 Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 121 GVFFRKHTKRIAIDLKLVGWVMNTNENTVVGCVQGPLEDIDKMKRWLKYEGSPKSRIDKCIFKDEKEVQKFDYKDFVVRK 360
GVFFRKHT+ L LVGWV NT+ TV G +QGP+ + M+ WL+ GSPKS IDK F +EK + K DY DF + K
Sbjct: 20 GVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRGSPKSHIDKANFNNEKVILKLDYSDFQIVK 99
The following BLAST results are available for this feature:
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