TCONS_00029338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029338
Unique NameTCONS_00029338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1118

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029338 ID=TCONS_00029338|Name=TCONS_00029338|organism=Clytia hemisphaerica|type=transcript|length=1118bp
ATTTTTATGGCCTGTCTACACGACAGCCTAGTTATAAACCTAAGATTTAT
GAACTGTAGTGTGGATAGGCTTGAAGGAGACATTGTCTTGACGAATGGTT
TTCGGCAAACAAATCAAAGCAAAATGGCTGCAGCAAAGTCAATTTCATTC
GAAGTTTTTGGTAAAGTTCAAGCATACCAAAAGGATTGCAATCGATTTGA
AACTTGTTGGTTGGGTCATGAATACAAATGAAAACACAGTCGTTGGATGT
GTTCAAGGTCCTTTAGAAGACATCGATAAAATGAAACGCTGGCTGAAATA
TGAAGGAAGTCCAAAATCAAGGATCGATAAATGTATCTTTAAAGATGAAA
AAGAGGTTCAAAAATTTGATTATAAGGACTTTGTTGTCAGAAAATAGATA
CATATTTATATTTTATTTATATTTTCATACACATAAATTTTTTGTTGTAA
ATAAGGTGTAcaaatataaaatattttgagttAAAATGATACAAAAATTG
TTAATGTTATTTTACTCTTAAATCTTGATAAATCTTTGTGATGTGCTTAT
ATTGACCTGTTGAAgaaaaaatcaatcaattacAGACTTCTACAAGAACC
CGTAATTCTTTCTCGGTAGTTTTTATTTACTGAGATTATCaagttttgag
tttttttcttataaatttctgaaaatttaggcaaaaattttcttaaactG
TTATTGGTCAAATTCTAGACTTATGTTAATATTAAAACTTTCTCAAAAAG
AGTCTTTATCTATATAAATAGAAAGCttttaaaagaattattttcagAAG
TAAGCCCAGCTGGCGCGTAAGACATAACCCTCTTTCAACATTTGTCATCT
GGATGTTGATGGAACGCGTTCCAGCTCAGATTTAGTTTTAATTTGTAGCT
TCAGCAATTCGTTTCATGATTATGTCTTTTTCTCGTTGCTTCTTAGTTTC
TTTGAGATGTGCAATTTCTTGACATTTGGTGTAAAAACATAAATAGGCTG
AAATGTACATCAATATTTCACCAACCCAAGCCATGATATAAGGAAATCTA
AAGATAAAATCCGAAATTATTGATTGGCTTAGATTTAAAAGAATTATCGG
AGTTGATACCAGGCTGAT
Run BLAST on NCBI

protein sequence of TCONS_00029338-protein

>TCONS_00029338-protein ID=TCONS_00029338-protein|Name=TCONS_00029338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MVFGKQIKAKWLQQSQFHSKFLVKFKHTKRIAIDLKLVGWVMNTNENTVV
GCVQGPLEDIDKMKRWLKYEGSPKSRIDKCIFKDEKEVQKFDYKDFVVRK
Run BLAST on NCBI

transcript from alignment at sc0000742:126434..130119+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029338 ID=TCONS_00029338|Name=TCONS_00029338|organism=Clytia hemisphaerica|type=transcript|length=3686bp|location=Sequence derived from alignment at sc0000742:126434..130119+ (Clytia hemisphaerica)
ATTTTTATGGCCTGTCTACACGACAGCCTAGTTATAAACCTAAGATTTAT
GAACTGTAGTGTGGATAGGCTTGAAGGAGACATTGTCTTGACGAATGGTT
TTCGGCAAACAAATCAAAGCAAAATGGCTGCAGCAAAGTCAATTTCATTC
GAAGTTTTTGGTAAAGTTCAAGGTATTTATTCTTGTGTTCTTTGGTATCC
CGTTTGGTATACCCTTAATTATTTATCTGAGGGAAGGAGCTTTGGATTAT
CAATGCTCTTGTGTCAATATCATCTTAATACTTGTTTTGGTTGGGCTATA
CAGCTTGTCTTAATCTCTGAAAATAgatgttatgatttttattACCCTTT
GGCCTTTTTAGGACTTAGACAGGGACTTTGAaggtccaaaaaaggcacct
ttAAGGTTGGTACATTTCTCTTCCCTCCATTTGCTTTATTACCCCCACTC
CCCCTGGGACTTAGGCtgcacacattttttttttttttttccNGGCACCT
TTAAGGTTGGTACATTTCTCTTCCCTCCATTTGCTTTATTACCCCCACTC
CCCCTGGGACTTAGGCtgcacacattttttttttttttccatttctattt
ggttgagttgcaggaggctttagaggcctattctcgcaacgcTTACTAac
gagcgtcccgtcagcaccttgaactgactactcaattcccctcacatggc
atgggttgacccgggtgaaggAACGTtgacttgccaagtgaactgccgtg
agtagGAATCAAACCCTGGCCTcttgcacagaagccaaggtcgactacca
ctataccatCACATCCTGAAATCCCTttaatatgttttattataGGGGAT
GCGGCGTACCCgcgtaccgtaagttggtctaatctcgacatccgtcttct
aatttagacacccttctttagaaacaggaataatatgaaagttggaatcg
gtgattgaaaaataatttttcctctcttaccactaagcaaagaaaaatag
tttcgacCTCTCTATtattttcagctctagaaaagggtgtcgaatttaga
cgagggatatcgacattagaccaagttacggtatggTCTACAATATTCCT
GTCCCAACTTGCCCCTggtgtcttttcttttttcttttgtgagtATGTGT
CACAGcaataccgtgaagtcgggtaacttgcatcattggagggaaacttg
catagtcatcaaatgactgaccaatcaaagcagcaaaatttcaaaacaaa
tgaactacgcagctcggCTCGcggctctactctaccattttgtttttgat
ttaactttgtattttaatgaccagccaggtcattcatttgagggctatgc
atgttagcctccattgatgcaagttacccgatctNttaactttgtatttt
aatgaccagccaggtcattcatttgagggctatgcatgttagcctccatt
gatgcaagttacccgatctcacggtacaagaagttctttttctttttcaa
tgaatgaaaatttcaaattatgaaaGTAACAACACAATGACTTCAATTTC
AGCCTTAATTCATGCCTATTTATATGCTTAGACTTCGATTTGTTAATTTT
CTTTGggttcatgaaaatttcaagtttttaagtcagaaaatctTTGGTCA
AAGAAAgctcaaacagctttaaaagtagccctaaaaaggtcagcgtttta
gaaaagctgcacaatttttttggtatttcaggTATGCTTGGGGATGTGCG
TAGCCTACCCAAAACTcaggaaaaaagtaaaaagagcATTAAGACTGACA
GATTGATATTTCCtctctttttttgcttttaggTGTCTTTTTCAGAAAGG
TAAGTCAATATGTATATTTTCAgtaagaaattaaaatttgaataaaagtg
CTAAAATAGACAGCAAAACGTTTCAGGAGTTGCAAGCCTATTTTTCCAAG
AATATTTATGTGTGTATATACTAATTTTGCCCAAAATTGTAATTCATCGA
CTTAATTGGTTTTATTCGAGATTTTTGTTTAGAAACAGGGGGTTATAAAA
GCATTATGAAAGTTTTCAGAAATGGCCTTTTGAGTAGTCTAATCAATCTT
GATCAAAAGACGAAAAAAAGTACACGCTCTTAAAATACACCCTTGCCCTT
GAACATCAAAATTTGACACtaaaaatattgcgttttaatAGTGTCATGCG
CGAAATTTCATCCCCACGAacatttatcccattaaagtatataaTATGAA
ATAAGTCTGGACCCTAAtccgttttacaaaatttttaagTGGAAGTTTAA
ACAAATAACACTTCACGAATTGAAGAAGTTTTTCTTGCAAAATAATTTAA
CAGGTTCCTTTGTTGAAGTTAATTCTCCCGAAATACAGAAATTTCACGAA
TTCGCCCAtagtaaaagtttttcttttaaaaagttatcATACAATTTGTA
AATCATATTTCAGCATACCAAAAGGATTGCAATCGATTTGAAACTTGTTG
GTTGGGTCATGAATACAAATGAAAACACAGTCGTTGGATGTGTTCAAGGT
CCTTTAGAAGACATCGATAAAATGTAAGTAATTATTGATTGTCATTTTAT
GAACATAGGGGGAGGggattgaaaaatcttcaaattttgataaacgGTAG
CGATTACCGATAACTGCTTATGCAAAAACTGATTTCAAAGTTCCCAGGGT
TATTTTCAGTTGATTTTAGtctcatttttcaaaataaaatccagaaaatt
ttttgcgatttttttttacttaatcTCCAAAAATACTTCTTAGTGGTCAA
TAAGTCTTACATTGTTACGTAGAGACTGTTTTATACACTTTTTGATTCAG
GAAACGCTGGCTGAAATATGAAGGAAGTCCAAAATCAAGGATCGATAAAT
GTATCTTTAAAGATGAAAAAGAGGTTCAAAAATTTGATTATAAGGACTTT
GTTGTCAGAAAATAGATACATATTTATATTTTATTTATATTTTCATACAC
ATAAATTTTTTGTTGTAAATAAGGTGTAcaaatataaaatattttgagtt
AAAATGATACAAAAATTGTTAATGTTATTTTACTCTTAAATCTTGATAAA
TCTTTGTGATGTGCTTATATTGACCTGTTGAAgaaaaaatcaatcaatta
cAGACTTCTACAAGAACCCGTAATTCTTTCTCGGTAGTTTTTATTTACTG
AGATTATCaagttttgagtttttttcttataaatttctgaaaatttaggc
aaaaattttcttaaactGTTATTGGTCAAATTCTAGACTTATGTTAATAT
TAAAACTTTCTCAAAAAGAGTCTTTATCTATATAAATAGAAAGCttttaa
aagaattattttcagAAGTAAGCCCAGCTGGCGCGTAAGACATAACCCTC
TTTCAACATTTGTCATCTGGATGTTGATGGAACGCGTTCCAGCTCAGATT
TAGTTTTAATTTGTAGCTTCAGCAATTCGTTTCATGATTATGTCTTTTTC
TCGTTGCTTCTTAGTTTCTTTGAGATGTGCAATTTCTTGACATTTGGTGT
AAAAACATAAATAGGCTGAAATGTACATCAATATTTCACCAACCCAAGCC
ATGATATAAGGAAATCTAAAGATAAAATCCGAAATTATTGATTGGCTTAG
ATTTAAAAGAATTATCGGAGTTGATACCAGGCTGAT

Coding sequence (CDS) from alignment at sc0000742:126434..130119+

>TCONS_00029338 ID=TCONS_00029338|Name=TCONS_00029338|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at sc0000742:126434..130119+ (Clytia hemisphaerica)
ATGGTTTTCGGCAAACAAATCAAAGCAAAATGGCTGCAGCAAAGTCAATT
TCATTCGAAGTTTTTGGTAAAGTTCAAGCATACCAAAAGGATTGCAATCG
ATTTGAAACTTGTTGGTTGGGTCATGAATACAAATGAAAACACAGTCGTT
GGATGTGTTCAAGGTCCTTTAGAAGACATCGATAAAATGAAACGCTGGCT
GAAATATGAAGGAAGTCCAAAATCAAGGATCGATAAATGTATCTTTAAAG
ATGAAAAAGAGGTTCAAAAATTTGATTATAAGGACTTTGTTGTCAGAAAA
TAGATGGTTTTCGGCAAACAAATCAAAGCAAAATGGCTGCAGCAAAGTCA
ATTTCATTCGAAGTTTTTGGTAAAGTTCAAGCATACCAAAAGGATTGCAA
TCGATTTGAAACTTGTTGGTTGGGTCATGAATACAAATGAAAACACAGTC
GTTGGATGTGTTCAAGGTCCTTTAGAAGACATCGATAAAATGAAACGCTG
GCTGAAATATGAAGGAAGTCCAAAATCAAGGATCGATAAATGTATCTTTA
AAGATGAAAAAGAGGTTCAAAAATTTGATTATAAGGACTTTGTTGTCAGA
AAATAGATGGTTTTCGGCAAACAAATCAAAGCAAAATGGCTGCAGCAAAG
TCAATTTCATTCGAAGTTTTTGGTAAAGTTCAAGCATACCAAAAGGATTG
CAATCGATTTGAAACTTGTTGGTTGGGTCATGAATACAAATGAAAACACA
GTCGTTGGATGTGTTCAAGGTCCTTTAGAAGACATCGATAAAATGAAACG
CTGGCTGAAATATGAAGGAAGTCCAAAATCAAGGATCGATAAATGTATCT
TTAAAGATGAAAAAGAGGTTCAAAAATTTGATTATAAGGACTTTGTTGTC
AGAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016733XLOC_016733Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029338-proteinTCONS_00029338-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029338-exon-sc0000742-1491911889:126434..126605TCONS_00029338-exon-sc0000742-1491911889:126434..126605Clytia hemisphaericaexon
TCONS_00029338-exon-sc0000742-1510915933:126434..126605TCONS_00029338-exon-sc0000742-1510915933:126434..126605Clytia hemisphaericaexon
TCONS_00029338-exon-sc0000742-1575043694:126434..126605TCONS_00029338-exon-sc0000742-1575043694:126434..126605Clytia hemisphaericaexon
TCONS_00029338-exon-sc0000742-1491911889:128897..129006TCONS_00029338-exon-sc0000742-1491911889:128897..129006Clytia hemisphaericaexon
TCONS_00029338-exon-sc0000742-1510915933:128897..129006TCONS_00029338-exon-sc0000742-1510915933:128897..129006Clytia hemisphaericaexon
TCONS_00029338-exon-sc0000742-1575043694:128897..129006TCONS_00029338-exon-sc0000742-1575043694:128897..129006Clytia hemisphaericaexon
TCONS_00029338-exon-sc0000742-1491911889:129284..130119TCONS_00029338-exon-sc0000742-1491911889:129284..130119Clytia hemisphaericaexon
TCONS_00029338-exon-sc0000742-1510915933:129284..130119TCONS_00029338-exon-sc0000742-1510915933:129284..130119Clytia hemisphaericaexon
TCONS_00029338-exon-sc0000742-1575043694:129284..130119TCONS_00029338-exon-sc0000742-1575043694:129284..130119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000742supercontigsc0000742:126434..130119 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.49051	9.82803	14.8156	17.6465	5.62867	3.33589	1.34154	2.51186	4.42298	3.87463	3.35586	2.89973	1.38288	2.31909	0.657135	0.731413	2.15883	2.31289	0.387347	0.796388	5.31113	1.5088	3.94895	4.16549	5.6016	6.99718	1.27812	0.914155	0.875681	1.23637
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020456Acylphosphatase
IPR001792Acylphosphatase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003998acylphosphatase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003998 acylphosphatase activity
Blast
[Close]
BLAST of TCONS_00029338 vs. Swiss-Prot (Human)
Match: ACYP1 (Acylphosphatase-1 OS=Homo sapiens GN=ACYP1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.100e-17
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 2 
Query:  170 KHTKRIAIDLKLVGWVMNTNENTVVGCVQGPLEDIDKMKRWLKYEGSPKSRIDKCIFKDEKEVQKFDYKDFVVRK 394
            KHT+     L LVGWV NT+  TV G +QGP+  +  M+ WL+  GSPKS IDK  F +EK + K DY DF + K
Sbjct:   25 KHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETRGSPKSHIDKANFNNEKVILKLDYSDFQIVK 99
The following BLAST results are available for this feature:
BLAST of TCONS_00029338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACYP11.100e-1749.33Acylphosphatase-1 OS=Homo sapiens GN=ACYP1 PE=1 SV... [more]
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