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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029337 ID=TCONS_00029337|Name=TCONS_00029337|organism=Clytia hemisphaerica|type=transcript|length=2647bp
GGCTTTCGCGCTAGAATGGGAAAGAATGTCTTTTCACCTATGTAGCAGCT
GCTGTAGATATGTGACGTTTTGAAGCTGTTTGTTTACAAATCAAagctac
catcttgaaattttgcatgAATTAGAAAATGTTTCTTAATTTATGCTGAT
TATGCGTCCAAATGATTGTTTCCGATTGTTCATCAGGCGGCTTATCAATT
AGAATGCCATATTTGGTCAATGGCTATTATGCTCTTTTCTTCGAGATAGA
AAACAAGTAGGTTGGGTTCGTACTTTGTTTTCCTTGACGAACACAACTAG
GGAAGAGTCACAGAAGTTAGCAGACAGCACTTGCTTCGGTTCACATCTCA
GGACTTGTTCACCACATACAACCAAAATGTCGTCCGCAAAGAAAAGCAAG
AAGGGAGCCTCTAAAAAGAGAGCCCAAAGAGCAACTTCCAATGTCTTCGC
TATGTTCGATCAATCACAAATCCAGGAATTCAAAGAAGCTTTCAACATGA
TCGATCAAAATCGTGATGGTTTCATCGACAAAGAAGATCTTCACGATATG
TTGGCTTCTTTAGGTAAAGATCCACCAGACAGCTATTTAGATGGTATGAT
GAAAGAAGCTCCTGGACCAATTAACTTCACTATGTTCTTAACGCTTTTCG
GAGAGAAATTAAACGGTACAGATCCAGAAGATGTTATAAAGAACGCTTTC
GCCTGTTTCGATGCTGATCAGACTGGGTTTATCAAAGAAGACTACCTTAG
GGAACTTTTAATGACTATGGGAGACAGATTCACTGAACAAGAATGTGACG
AAATGTTCCATGGTGCCCCAGTCGACCCAAAAGGTAGATTCAACTACGTT
GAGTTCACAAGGATCATCAAGCATGGTTCCAAAGAGGAATAAACGTCTCG
TTGGATTTAATGCGCAACCCCTCTCTCTCTTCAATGTACATTACTATCAA
ATTTTTCTAACATGTACCATGCTACCTAACAACCTGGCTAATAAGCACAA
CTCAGGAATCTCGCAAACATATGCAAACAGTAAAATTATTTATGAGGACA
ACCTGTTGGAAATGTGTAGGAGAGATTGAAAATGTCGCAGGAATCGTTAA
AATGAGCTACAGTTAGAAATTGAAGaagagttttaaacaaatgcaTGACg
ttcagtgaaaatgaaatcatTAATGATAGAAGttccaaaattattttttc
atattttttttgtttttcaatatttcagttTTTCCAAAGAgtcacaaatt
ttattttctaaaacagTTCCCATTCCCATTTCAGGTCACAGGTAGTTTGA
AATAGTTCTCGTAGAATCTTAAAAAAACAGGTTTGCTCCCTATAATAAGC
TTTGGTGGGTTCTTTTTACTCTATGGCTTATTTATCACCATGTAGTATTT
ATTATACTTCAAATCCTTAGGAGAACTGTGACAAAATGACTTTTTCAAAA
CCCCATCAAGCCTTTAAAATGTAAATagtctttttatattttcatgaagc
aaacaaacaaagaatttCACCCAGCCAGAAGAATTATTCAGTTCCAGttt
acttttttcacatttataAAAAGACTAAACTGTTGAATAACTAAAGGAAT
CACCaaccttaaaaaaaattgaacatgaaACCTACGAGACTTGAAGTCTT
GTAAAGGTGGATTGAAAAATAACAcccacaaaagaattttgtaaagAGTG
ATAGAATTTTACCCATCACACTttgattttagatatttttggaatttttt
tgtaGAAGTGTATATTTGCTGTAAATCAGGCGATTTTCGTATCGTATAAG
AAACATAACTTGAATTTTCATACGACTTTCTTTCGTGTTGACCACCTTAT
TTCGTTCAAGAATTTCTCTGTTTGTTAATTTATGAGATTTTTTGtctttc
cttcttttttttgcTTAGGACATCAGCATATTATAGATTTGTTTCTTTAT
TTCTATTCCacaaaatttttgtacatatgTGAATCGAATACGTTGTTCGT
ACTAAAGTAactattttgataaattttttaattccttttgaatttctttt
actGTGCataaacagaaaatttttaaaaacccaaTTCTACAGGTGTTTTT
GAAAAGGGTTTAAATTCAgagtttttccaaaatcagtcGTGTAACTCTTA
CTTTACTAAGATGCCTTTTCAACCTTGTTTTGGGTGTTGGCTATATATAC
CCTTTGTGTACAAATTAACCACTTTTTCATGTGTCATAAATCCCCTCTCT
GCGTGTTGCACTTTTACCATTTTTGTCCTTTTTCAGGTCTCAAAGACATG
ACATTTTGATGaagttttaatttcaaattaagAGGCTTAATCATGGATCa
gcagaatttcaaaaaagaaattcttttaaaaacctttcaTGGTTTCAGCT
CAGCTTTTGTCATTATGTTAAGATCTCAATAATAAGCTATACCTTTCCAG
GGGGTGATGGATTCTCGGATAAGCTAAGCTCACAGCTGTAGACTGTGCTT
TATTTCCTAATGCAAACAATTCTTGATTAAACATTTTTACAGCCAGCTCC
ACATATGTGAAAtgatttccaatatttttttttagcttttttttccTCAC
AAATAGACAACTGCATACATTGATGACGTATTAATCGAACTTCTCAT Run BLAST on NCBI protein sequence of TCONS_00029337-protein >TCONS_00029337-protein ID=TCONS_00029337-protein|Name=TCONS_00029337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MSSAKKSKKGASKKRAQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFI
DKEDLHDMLASLGKDPPDSYLDGMMKEAPGPINFTMFLTLFGEKLNGTDP
EDVIKNAFACFDADQTGFIKEDYLRELLMTMGDRFTEQECDEMFHGAPVD
PKGRFNYVEFTRIIKHGSKEE Run BLAST on NCBI transcript from alignment at sc0000742:65291..69019+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029337 ID=TCONS_00029337|Name=TCONS_00029337|organism=Clytia hemisphaerica|type=transcript|length=3729bp|location=Sequence derived from alignment at sc0000742:65291..69019+ (Clytia hemisphaerica)
GGCTTTCGCGCTAGAATGGGAAAGAATGTCTTTTCACCTATGTAGCAGCT
GCTGTAGATATGTGACGTTTTGAAGCTGTTTGTTTACAAATCAAagctac
catcttgaaattttgcatgAATTAGAAAATGTTTCTTAATTTATGCTGAT
TATGCGTCCAAATGATTGTTTCCGATTGTTCATCAGGCGGCTTATCAATT
AGAATGCCATATTTGGTCAATGGCTATTATGCTCTTTTCTTCGAGATAGA
AAACAAGTAGGTTGGGTTCGTACTTTGTTTTCCTTGACGAACACAACTAG
GGAAGAGTCACAGAAGTTAGCAGACAGCACTTGCTTCGGTTCACATCTCA
GGACTTGTTCACCACATACAACCAAAATGTCGTCCGCAAAGAAAAGCAAG
AAGGGAGCCTCTAAAAAGAGAGCCCAAAGAGCAACTTCCAATGTCTTCGC
TATGTTCGATCAATCACAAATCCAGGAATTCAAAGAAGCTTTCAACATGA
TCGATCAAAATCGTGATGGTTTCATCGACAAAGAAGATCTTCACGATATG
TTGGCTTCTTTAGGTAAAGATCCACCAGACAGCTATTTAGATGGTATGAT
GAAAGAAGCTCCTGGACCAATTAACTTCACTATGTTCTTAACGCTTTTCG
GAGAGAAATTAAACGGTACAGATCCAGAAGATGTTATAAAGAACGCTTTC
GCCTGTTTCGATGCTGATCAGACTGGGTTTATCAAAGAAGACTACCTTAG
GGAACTTTTAATGACTATGGGAGACAGGTATAACTCTTTTTCTTATTTCT
AAGACATTCTCTAGACACCATATGGTGAACATATTGNatctttttctttt
ttctaagaCATTCTCTAGACACCATATGGTGAACATATTGaagttttttt
gcttgaaaatttgttgtttttaaattatCGTAAACAGCTGTCGCCAAAAT
TAGCTGCtccaagaaagattttttctttatttctaactATTTTAGGTGTA
TTGCTTCAAAGCAATGTtgagagttttttgtttttttcacctgagacttc
aagatttttttctgttctttttCCCACTTACTTTTGAGACCATCCATATG
GTGTTGAACATTTAATTCTAAATGCTGAGAAAATTGATTTGAAGATATTT
ATTGAGGTTTATGGTGTTTATAAATGGTGTTTGCTATCTTCAGTATCATT
ATATAGCATATATATGGTGTTCTTTGGATCTTCTTCTACTATTTTGATAT
ACTTTATAAAGATTCATTCTTTAATGAGATGACGAACCAAAAGAAAAATC
TGTCGATTTCAATTTATAAACTGTCTGAACAGTCTAAACTATTACTTAAC
TGATTTGGTAAAATTCCCTCTTTGGAGAAAAAGGAAATGATTGTTTGTAA
ATGATCTAATAAAAGTGGGATTGGCTTTTCTTGTTCAGGAAATTTTGGGT
TCCTTCTTGTTGTATTTTTATTGCTTGTTTGTGAGTTTCCTGTATTACCT
TTTACAGTTTTCCTGTTGTTTATCAGAATATCTTccaaacttttttattc
tttcctCAGAACAATTCTTTTCACTCTCCAAATTAAGTTAGCTTGATTTT
TATTATTGTGTTTAAAAGTTTAGCTTGATCTACTTTAGAAACCTCCTGtg
gtttttttcaattattcttTCAATTAGATCAACTTTCATGCTTTGTTCTA
TTAGTTCTTATCACAATGGTATTTCTGCATTCAAAAATGCATGAGATTGA
TGACTGCTGCTCATTTCATTATGTACAGCCCCTATAATAGCTTTTTAATC
ACCTTATCAGAATTATGATAAtgctaaaaaaaattattttcttgatCTTT
ATTTTACAGATTCACTGAACAAGAATGTGACGAAATGTTCCATGGTGCCC
CAGTCGACCCAAAAGGTAGATTCAACTACGTTGAGTTCACAAGGATCATC
AAGCATGGTTCCAAAGAGGAATAAACGTCTCGTTGGATTTAATGCGCAAC
CCCTCTCTCTCTTCAATGTACATTACTATCAAATTTTTCTAACATGTACC
ATGCTACCTAACAACCTGGCTAATAAGCACAACTCAGGAATCTCGCAAAC
ATATGCAAACAGTAAAATTATTTATGAGGACAACCTGTTGGAAATGTGTA
GGAGAGATTGAAAATGTCGCAGGAATCGTTAAAATGAGCTACAGTTAGAA
ATTGAAGaagagttttaaacaaatgcaTGACgttcagtgaaaatgaaatc
atTAATGATAGAAGttccaaaattattttttcatattttttttgtttttc
aatatttcagttTTTCCAAAGAgtcacaaattttattttctaaaacagTT
CCCATTCCCATTTCAGGTCACAGGTAGTTTGAAATAGTTCTCGTAGAATC
TTAAAAAAACAGGTTTGCTCCCTATAATAAGCTTTGGTGGGTTCTTTTTA
CTCTATGGCTTATTTATCACCATGTAGTATTTATTATACTTCAAATCCTT
AGGAGAACTGTGACAAAATGACTTTTTCAAAACCCCATCAAGCCTTTAAA
ATGTAAATagtctttttatattttcatgaagcaaacaaacaaagaatttC
ACCCAGCCAGAAGAATTATTCAGTTCCAGtttacttttttcacatttata
AAAAGACTAAACTGTTGAATAACTAAAGGAATCACCaaccttaaaaaaaa
ttgaacatgaaACCTACGAGACTTGAAGTCTTGTAAAGGTGGATTGAAAA
ATAACAcccacaaaagaattttgtaaagAGTGATAGAATTTTACCCATCA
CACTttgattttagatatttttggaatttttttgtaGAAGTGTATATTTG
CTGTAAATCAGGCGATTTTCGTATCGTATAAGAAACATAACTTGAATTTT
CATACGACTTTCTTTCGTGTTGACCACCTTATTTCGTTCAAGAATTTCTC
TGTTTGTTAATTTATGAGATTTTTTGtctttccttcttttttttgcTTAG
GACATCAGCATATTATAGATTTGTTTCTTTATTTCTATTCCacaaaattt
ttgtacatatgTGAATCGAATACGTTGTTCGTACTAAAGTAactattttg
ataaattttttaattccttttgaatttcttttactGTGCataaacagaaa
atttttaaaaacccaaTTCTACAGGTGTTTTTGAAAAGGGTTTAAATTCA
gagtttttccaaaatcagtcGTGTAACTCTTACTTTACTAAGATGCCTTT
TCAACCTTGTTTTGGGTGTTGGCTATATATACCCTTTGTGTACAAATTAA
CCACTTTTTCATGTGTCATAAATCCCCTCTCTGCGTGTTGCACTTTTACC
ATTTTTGTCCTTTTTCAGGTCTCAAAGACATGACATTTTGATGaagtttt
aatttcaaattaagAGGCTTAATCATGGATCagcagaatttcaaaaaaga
aattcttttaaaaacctttcaTGGTTTCAGCTCAGCTTTTGTCATTATGT
TAAGATCTCAATAATAAGCTATACCTTTCCAGGGGGTGATGGATTCTCGG
ATAAGCTAAGCTCACAGCTGTAGACTGTGCTTTATTTCCTAATGCAAACA
ATTCTTGATTAAACATTTTTACAGCCAGCTCCACATATGTGAAAtgattt
ccaatatttttttttagcttttttttccTCACAAATAGACAACTGCATAC
ATTGATGACGTATTAATCGAACTTCTCAT Coding sequence (CDS) from alignment at sc0000742:65291..69019+ >TCONS_00029337 ID=TCONS_00029337|Name=TCONS_00029337|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at sc0000742:65291..69019+ (Clytia hemisphaerica)
ATGTCGTCCGCAAAGAAAAGCAAGAAGGGAGCCTCTAAAAAGAGAGCCCA
AAGAGCAACTTCCAATGTCTTCGCTATGTTCGATCAATCACAAATCCAGG
AATTCAAAGAAGCTTTCAACATGATCGATCAAAATCGTGATGGTTTCATC
GACAAAGAAGATCTTCACGATATGTTGGCTTCTTTAGGTAAAGATCCACC
AGACAGCTATTTAGATGGTATGATGAAAGAAGCTCCTGGACCAATTAACT
TCACTATGTTCTTAACGCTTTTCGGAGAGAAATTAAACGGTACAGATCCA
GAAGATGTTATAAAGAACGCTTTCGCCTGTTTCGATGCTGATCAGACTGG
GTTTATCAAAGAAGACTACCTTAGGGAACTTTTAATGACTATGGGAGACA
GATTCACTGAACAAGAATGTGACGAAATGTTCCATGGTGCCCCAGTCGAC
CCAAAAGGTAGATTCAACTACGTTGAGTTCACAAGGATCATCAAGCATGG
TTCCAAAGAGGAATAAATGTCGTCCGCAAAGAAAAGCAAGAAGGGAGCCT
CTAAAAAGAGAGCCCAAAGAGCAACTTCCAATGTCTTCGCTATGTTCGAT
CAATCACAAATCCAGGAATTCAAAGAAGCTTTCAACATGATCGATCAAAA
TCGTGATGGTTTCATCGACAAAGAAGATCTTCACGATATGTTGGCTTCTT
TAGGTAAAGATCCACCAGACAGCTATTTAGATGGTATGATGAAAGAAGCT
CCTGGACCAATTAACTTCACTATGTTCTTAACGCTTTTCGGAGAGAAATT
AAACGGTACAGATCCAGAAGATGTTATAAAGAACGCTTTCGCCTGTTTCG
ATGCTGATCAGACTGGGTTTATCAAAGAAGACTACCTTAGGGAACTTTTA
ATGACTATGGGAGACAGATTCACTGAACAAGAATGTGACGAAATGTTCCA
TGGTGCCCCAGTCGACCCAAAAGGTAGATTCAACTACGTTGAGTTCACAA
GGATCATCAAGCATGGTTCCAAAGAGGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029337-exon-sc0000742-1491911889:65291..66067 | TCONS_00029337-exon-sc0000742-1491911889:65291..66067 | Clytia hemisphaerica | exon |
| TCONS_00029337-exon-sc0000742-1510915933:65291..66067 | TCONS_00029337-exon-sc0000742-1510915933:65291..66067 | Clytia hemisphaerica | exon |
| TCONS_00029337-exon-sc0000742-1575043694:65291..66067 | TCONS_00029337-exon-sc0000742-1575043694:65291..66067 | Clytia hemisphaerica | exon |
| TCONS_00029337-exon-sc0000742-1491911889:67150..69019 | TCONS_00029337-exon-sc0000742-1491911889:67150..69019 | Clytia hemisphaerica | exon |
| TCONS_00029337-exon-sc0000742-1510915933:67150..69019 | TCONS_00029337-exon-sc0000742-1510915933:67150..69019 | Clytia hemisphaerica | exon |
| TCONS_00029337-exon-sc0000742-1575043694:67150..69019 | TCONS_00029337-exon-sc0000742-1575043694:67150..69019 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000742 | supercontig | sc0000742:65291..69019 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
BLAST of TCONS_00029337 vs. Swiss-Prot (Human)
Match: ML12B (Myosin regulatory light chain 12B OS=Homo sapiens GN=MYL12B PE=1 SV=2) HSP 1 Score: 268.085 bits (684), Expect = 1.870e-83 Identity = 124/152 (81.58%), Postives = 140/152 (92.11%), Query Frame = 2
Query: 434 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKDPPDSYLDGMMKEAPGPINFTMFLTLFGEKLNGTDPEDVIKNAFACFDADQTGFIKEDYLRELLMTMGDRFTEQECDEMFHGAPVDPKGRFNYVEFTRIIKHGSKEE 889
TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK+P D+YLD MM EAPGPINFTMFLT+FGEKLNGTDPEDVI+NAFACFD + TG I+EDYLRELL TMGDRFT++E DE++ AP+D KG FNY+EFTRI+KHG+K++
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDK 170
The following BLAST results are available for this feature:
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