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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029334 ID=TCONS_00029334|Name=TCONS_00029334|organism=Clytia hemisphaerica|type=transcript|length=2346bpRun BLAST on NCBI transcript from alignment at sc0000742:25919..64609+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029334 ID=TCONS_00029334|Name=TCONS_00029334|organism=Clytia hemisphaerica|type=transcript|length=38691bp|location=Sequence derived from alignment at sc0000742:25919..64609+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00029334 vs. Swiss-Prot (Human)
Match: ARMC8 (Armadillo repeat-containing protein 8 OS=Homo sapiens GN=ARMC8 PE=1 SV=2) HSP 1 Score: 333.569 bits (854), Expect = 2.533e-102 Identity = 233/669 (34.83%), Postives = 378/669 (56.50%), Query Frame = 1
Query: 121 EANSVEKMYIQALASDNPDERYQTVRKIKNMAIGMKCKKTTFVEEGLIERLLELMIQADTTIEFAVEATVILGSLTRGEPEVVDKLMNSQAVPILCKGLCHEDERLVIACLRSLSRCFMSKNISGDLIYENANIITKLVYLLTISSQTAEYVTNILKITCKTTSDQTTLFDANITSALVPWLNKKQVGILVPVLECLSAILHGNEMIANEVLDGDYHGVSIEKQLINLISSDRPDEVQLAAADCLT---KALCISTTEKCTVKLERKILNVFVRLCQKDKPLRIRISAANGLAYLIEEDNELQAIAAXXXXXXXXXXXXXXXXXX---------------XXEEVRQRAKEAALKVFASLSANDEKVRKQIVDNCSKLMDNIHQAINQNENVPXXXXXXXXXXXXXXXXXXXRTTFQDVKIWQPVITALKXXXXXXXXXXXXXXXXXXXXEFSPCKDGLIDFGALDVLVALIKRNEIPLQINGIWGIMNLAYDANEDLKNKIVEVAGIDNILSLLDSSDVDVAVKALGVLRNLLTEKEDIDNLMNSHGKEILQAVKPLALNDHLNERIKEQVLCLLSNIANGCFAKNLLMEDLETISKVISYISSNVEHLQVASVFCVTNLMRSTGNPAEISDRKVKLRELGAEKQLQTLLTTPNSNLFDRVKQALQQF 2073
E + + Y+ L +P + Q V +KN IG +K + G + RLL L+ Q ++ E E V+LGSL G V L++ +P L +GL D + + ACLR L F S +L+Y +A +I L+ LL+ S T EY+ I CK QT LF+ + L + + L+C S + N ++ +++ G + + + ++ D+P E+QL +A CLT +A I T + C V K L VR+C K++ L R+ A LAYLIE D ELQ IA+I++HLI ++ S+ E+RQ AA K++ASL ANDE +RK+I++ +MD I ++++ +V ++ AA++CL SLSRSVQQLRT+FQD +W+P++ L+ + + ++ SS + LL EFSP K+ +++ GA+++L L + L++NGIW +MN+A+ A + +K I+ + + LL SD++V +K LG+LRNLL+ + ID +M++HGK+I+QAV + +H N +KEQ LC+L+NIA+G AK+L+M + + + K+ Y+ + LQ+A++FC++NL+ + ++ +R+ KLR++G L L +P+SNL D+ K ALQQ+
Sbjct: 16 EVTASSRHYVDRLFDPDPQKVLQGVIDMKNAVIGNNKQKANLIVLGAVPRLLYLLQQETSSTELKTECAVVLGSLAMGTENNVKSLLDCHIIPALLQGLLSPDLKFIEACLRCLRTIFTSPVTPEELLYTDATVIPHLMALLSRSRYTQEYICQIFSHCCKGPDHQTILFNHGAVQNIAHLLTSLSYKVRMQALKCFSVLAFENPQVSMTLVNVLVDGELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDNCIV---LKTLPCLVRMCSKERLLEERVEGAETLAYLIEPDVELQRIASITDHLIAMLADYFKYPSSVSAITDIKRLDHDLKHAHELRQ----AAFKLYASLGANDEDIRKKIIET-ENMMDRIVTGLSES-SVKVRLAAVRCLHSLSRSVQQLRTSFQDHAVWKPLMKVLQNAPDEILVVASSMLCNLLL-EFSPSKEPILESGAVELLCGLTQSENPALRVNGIWALMNMAFQAEQKIKADILRSLSTEQLFRLLSDSDLNVLMKTLGLLRNLLSTRPHIDKIMSTHGKQIMQAVTLILEGEH-NIEVKEQTLCILANIADGTTAKDLIMTNDDILQKIKYYMGHSHVKLQLAAMFCISNLIWNEEEGSQ--ERQDKLRDMGIVDILHKLSQSPDSNLCDKAKMALQQY 671 The following BLAST results are available for this feature:
BLAST of TCONS_00029334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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