TCONS_00029325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029325
Unique NameTCONS_00029325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029325 ID=TCONS_00029325|Name=TCONS_00029325|organism=Clytia hemisphaerica|type=transcript|length=430bp
NNAGTTTCTCGATGCCTTGAGGGACACATTCTTCTTCCAGCACGTTGATG
AGCCGACTAGAGCCAGAGGAACAGATGAAccatcgttaatcgatttgatA
CTCACTAACGAAGAAGACCAAGTCAATAAAATCAACTACTTAGCTCCTCT
TTGCAAAAGTGACCATAGCGTACTCGCATTTTCATTTGAATGCTATCTCG
ACCCAGAAGTGTTAACTGAGAGGTTTAATTATAATAAAGCAGATTTTGCA
GCGATGAAAAGACACCTGGAGTCTTCAGGATGGGTAGATGATTTCAAGGT
CCGAGCTGAAGACCATCAAGTGAATAGTTGCTGGAAGATGTTTCAAGAAA
AACTACTGGAACTAAGGGCCGAATTTGTCCCACTTTCAGCAACGAAACGA
GTCTATGGGAAAAGAGGAAGATTTGCAATA
Run BLAST on NCBI

protein sequence of TCONS_00029325-protein

>TCONS_00029325-protein ID=TCONS_00029325-protein|Name=TCONS_00029325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
XFLDALRDTFFFQHVDEPTRARGTDEPSLIDLILTNEEDQVNKINYLAPL
CKSDHSVLAFSFECYLDPEVLTERFNYNKADFAAMKRHLESSGWVDDFKV
RAEDHQVNSCWKMFQEKLLELRAEFVPLSATKRVYGKRGRFAI
Run BLAST on NCBI

transcript from alignment at sc0000737:61648..62077

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029325 ID=TCONS_00029325|Name=TCONS_00029325|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at sc0000737:61648..62077 (Clytia hemisphaerica)
TATTGCAAATCTTCCTCTTTTCCCATAGACTCGTTTCGTTGCTGAAAGTG
GGACAAATTCGGCCCTTAGTTCCAGTAGTTTTTCTTGAAACATCTTCCAG
CAACTATTCACTTGATGGTCTTCAGCTCGGACCTTGAAATCATCTACCCA
TCCTGAAGACTCCAGGTGTCTTTTCATCGCTGCAAAATCTGCTTTATTAT
AATTAAACCTCTCAGTTAACACTTCTGGGTCGAGATAGCATTCAAATGAA
AATGCGAGTACGCTATGGTCACTTTTGCAAAGAGGAGCTAAGTAGTTGAT
TTTATTGACTTGGTCTTCTTCGTTAGTGAGTatcaaatcgattaacgatg
gTTCATCTGTTCCTCTGGCTCTAGTCGGCTCATCAACGTGCTGGAAGAAG
AATGTGTCCCTCAAGGCATCGAGAAACTNN

Coding sequence (CDS) from alignment at sc0000737:61648..62077

>TCONS_00029325 ID=TCONS_00029325|Name=TCONS_00029325|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0000737:61648..62077 (Clytia hemisphaerica)
TATTGCAAATCTTCCTCTTTTCCCATAGACTCGTTTCGTTGCTGAAAGTG
GGACAAATTCGGCCCTTAGTTCCAGTAGTTTTTCTTGAAACATCTTCCAG
CAACTATTCACTTGATGGTCTTCAGCTCGGACCTTGAAATCATCTACCCA
TCCTGAAGACTCCAGGTGTCTTTTCATCGCTGCAAAATCTGCTTTATTAT
AATTAAACCTCTCAGTTAACACTTCTGGGTCGAGATAGCATTCAAATGAA
AATGCGAGTACGCTATGGTCACTTTTGCAAAGAGGAGCTAAGTAGTTGAT
TTTATTGACTTGGTCTTCTTCGTTAGTGAGTatcaaatcgattaacgatg
gTTCATCTGTTCCTCTGGCTCTAGTCGGCTCATCAACGTGCTGGAAGAAG
AATGTGTCCCTCAAGGCATCGAGAAACTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016723XLOC_016723Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029325-exon-sc0000737-1491911889:61648..62077TCONS_00029325-exon-sc0000737-1491911889:61648..62077Clytia hemisphaericaexon
TCONS_00029325-exon-sc0000737-1510915933:61648..62077TCONS_00029325-exon-sc0000737-1510915933:61648..62077Clytia hemisphaericaexon
TCONS_00029325-exon-sc0000737-1575043694:61648..62077TCONS_00029325-exon-sc0000737-1575043694:61648..62077Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029325-proteinTCONS_00029325-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000737supercontigsc0000737:61648..62077 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.12267	3.42188	5.6372	5.33282	0.86595	0.855356	0.20639	0.57966	0.462573	0.50269	0.183631	1.02247	1.17442	0.665261	0.12995	0.225368	0.120511	0.19301	0	0.487922	0.356048	0.283606	0.480665	0.669363	1.37886	2.26162	0.517333	0.704761	0.356358	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top