TCONS_00029310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029310
Unique NameTCONS_00029310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029310 ID=TCONS_00029310|Name=TCONS_00029310|organism=Clytia hemisphaerica|type=transcript|length=432bp
ttatcAATCATTTTCACTCATTTATTGATATTGTTGATATTGCTATCAAG
TAAAATTCTAGTTTTGATGGGTGATTTTGGTCTAACATTATGTAAGTTTG
TTTTCCACTTTTTTCAAGCACTGCTGTAAGATTTTGCAATTATGGATACC
ATctttaaattttggaaaaccAATATTCTGGTTTTTCAACGAAAATCAAa
atgtaaaacaaaaaattaccaATTACCAATTAGAATTACCAAGATTAATC
ACAAATGTACCTTATACAACAGCCACTACATCACAAAAAGAAGTCCTTAA
ATATCAGTCTATCATGTGTAATCATGTAATAATGTAATCATGTCTTCTTT
GATGAAAATACTAATAACAATAATCACATGACCTACTGGTACAATTGTGC
ATTCTCTAAAGACTTCTTGCACGTGGTGGGAG
Run BLAST on NCBI

transcript from alignment at sc0000736:40730..41161

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029310 ID=TCONS_00029310|Name=TCONS_00029310|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at sc0000736:40730..41161 (Clytia hemisphaerica)
CTCCCACCACGTGCAAGAAGTCTTTAGAGAATGCACAATTGTACCAGTAG
GTCATGTGATTATTGTTATTAGTATTTTCATCAAAGAAGACATGATTACA
TTATTACATGATTACACATGATAGACTGATATTTAAGGACTTCTTTTTGT
GATGTAGTGGCTGTTGTATAAGGTACATTTGTGATTAATCTTGGTAATTC
TAATTGGTAATtggtaattttttgttttacattTTGATTTTCGTTGAAAA
ACCAGAATATTggttttccaaaatttaaagATGGTATCCATAATTGCAAA
ATCTTACAGCAGTGCTTGAAAAAAGTGGAAAACAAACTTACATAATGTTA
GACCAAAATCACCCATCAAAACTAGAATTTTACTTGATAGCAATATCAAC
AATATCAATAAATGAGTGAAAATGATTgataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016709XLOC_016709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029310-exon-sc0000736-1491911889:40730..41161TCONS_00029310-exon-sc0000736-1491911889:40730..41161Clytia hemisphaericaexon
TCONS_00029310-exon-sc0000736-1510915933:40730..41161TCONS_00029310-exon-sc0000736-1510915933:40730..41161Clytia hemisphaericaexon
TCONS_00029310-exon-sc0000736-1575043694:40730..41161TCONS_00029310-exon-sc0000736-1575043694:40730..41161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000736supercontigsc0000736:40730..41161 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.159093	0	0.180133	0	0.214546	0.339074	0	0.191487	0	0	0.805913	0.529775	0.211616	0.219765	0	0.0969468	0	0.122412	0	0.353943	1.07674	1.12542	0	0.16584	0	0	0.436296	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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