TCONS_00029274 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029274
Unique NameTCONS_00029274
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029274 ID=TCONS_00029274|Name=TCONS_00029274|organism=Clytia hemisphaerica|type=transcript|length=1387bp
CGCGGGGCTTTTAATTTTCTACAAAATtagatttcaagatttttaatttG
TAGTTTTCTACAAAATACTAGTTCTTGAAGAAGATgtatcaataatattt
ttgggagagtatttttagtttgaaattgTGGCTGGGTTAGGTGTGTGTTT
AAGATGATCATGGGTAACAAGACGTTTGTTCTGTTGTATCTGGTCTTCCC
AATACTCATTAGTTGccaagtCTTCCAGTACTTTATTGTGAACAACAAAG
ACCAGACAGCTAAAGTTATCGATACAGTGAAACTTCCAACATGCACTCAT
CTTGatcaagaaaaaaatgtaaCATTAAAGGGAGGAATCAATGCTGGTAA
ATTCACCAAGCATGGTATTGTACCGACAATGGATGCTTGTATAAATGCTT
GCTGCCAGGACGCAGAATGCGACGTTGCATTCATGCCAGGTCAAACTTGT
TACCGAGTGAACTGCTACAACGAATCACTATGTCAATCAGTACCGGCAAA
TCCAACCAACTTAGCCAGTGGTGAAGTGAGAATCTCCCATATCATTCGTG
GTGGTGGAGCTGGTGATGATGTTGATGAATTTCGAAAGAAAAACGGCGTC
AACCGGAATTCAAACCCTGGAGATGCACAATGTACTTTCAGTCGAGTTGA
ATATGGTAAAAACATTGCTGGTGGTAAACACGCTGGCGAAGTCATTGATC
TTGGTCCATTAGTTGACATTTATGATTGTGCTAAGAAATGTTGCCAACAC
GATAATTGTGAAGTAGCTCATATTCGGGAGAACAAATGTTATGCTGTAGA
TTGTTTTACCAGAGATCTTTGTCGGAAGGTTTCCGTTGATAATTTAAATC
CGAAACAGAATGCTATTGTTTACATGAACAAAAGAAGTGGCAAAAGACAA
CGACATAAAGATTCTTGTGGTGATGAATGTGGCAACGGATTATGCAGTCG
AAATGGAACATGTTCGTGTGACGTTGGTTTCAAAGGAGATTCTTGTGATC
AAGAAGTCGAGACAGGACATTGTGATCCAGTTTGCGGAGAGCATGGTTAT
TGTATGAAAAATGATTCTTGTAAATGTGATGATGGTTGGCAAGGATACAA
ATGTCAACATCAAATTGAGTGCTCACCACCTTGTGCCAATGGACTGTGTT
TACAAAGCCATACAAACCAATGCCGATGTGAGATCGGATGGACTGGCTTG
TCATGCAATGAATCAACTTCAGATAAACTTGTCTTAGCTTCGTCTGGTGA
AGAGGTTTTATTCACAGATTCAGAAGTTGAGCCAGAACTCGATATAAAGA
TTCATCAATCACCTCGCGTTCGCGAAAGTGAATCAATTTCAACGCTAGCG
GTAGCTATCGGGTGTGGTGTAGCGGCGGCGCTTCNTG
Run BLAST on NCBI

transcript from alignment at sc0000735:46160..50916-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029274 ID=TCONS_00029274|Name=TCONS_00029274|organism=Clytia hemisphaerica|type=transcript|length=4757bp|location=Sequence derived from alignment at sc0000735:46160..50916- (Clytia hemisphaerica)
CGCGGGGCTTTTAATTTTCTACAAAATTAGATTTCAAGATTTTTAATTTG
TAGTTTTCTACAAAATACTAGTTCTTGAAGAAGATGTATCAATAATATTT
TTGGGAGAGTATTTTTAGTTTGAAATTGTGGCTGGGTTAGGTGTGTGTTT
AAGATGATCATGGGTAACAAGACGTTTGTTCTGTTGTATCTGGTCTTCCC
AATACTCATTAGTTGCCAAGGTAGGTCCATTCTTTGTCTCAATCAATCCC
TTTAAAATGAAAGGTGCCTAAAATTGTTCCCTTTTTATCTCTGGAATTGG
TTATTGTGTTAATTGGCTGAGGGGAGCATAATAGTTAAGATTCTAACTTG
TCATATACAAAATGTTTATAATATTTGATTCTGCGACCCTATCAGATTTT
TCAAAGCTTGATAAAGGAACACACCCCTGTATCATGTGGTCATTGATCGT
ACATCTCTGTAACCTTGCTGGCAGCGATGTCCTGATTGATGGCAAACATT
TTCCACCCCCCCCCCCCTGTTTTTTCCCAATAGCAATAACTAGACTAAGG
TCGCCTCTTAAATATACGGAAGGTTGTTAAGGCCATCTACATGAAAATGT
GATGACGATAAATTGAAAAACACCAACTAGTACGAGTGCTTTGTATCGAT
ATTACTTAGCCTTCTATAAACAAATAGCACTTCTTTTTATCCCCATAAAC
AGCAATCGCTGTTGGGAATTTTATTCACCATCGCTTTTTCATGTAGATAG
CCCTTACAAGCTTCCGTACAATTACATAAAATAAGATTCTTGTAAAAATT
TCAAATGAAAAATTCAATTTTAGTCTTCCAGTACTTTATTGTGAACAACA
AAGACCAGACAGCTAAAGTTATCGATACAGTGAAACTTCCAACATGCACT
CATCTTGATCAAGAAAAAAATGTAACATTAAAGGGAGGAATCAATGCTGG
TAAATTCACCAAGCATGGTATTGTACCGACAATGGATGCTTGTATAAATG
CTTGCTGCCAGGTTTGTGATTTCATATTTTTTATTTTTTACTCACTAACC
CAAGCAGGTATTGGAGAGGTGGCCCATAAATCTATAAACCTCACAGGGCT
AGATAGAATAGCTTTGGCTGAAAAGTGTATCGTGATTAAGTAGGAAATCC
TATCTAGGTCACGTGACATTACAATAGAATCTCAGCGCTTGACCAAACAG
AAGCTTTGTGGATTTTTGAAAACAATAGTAACAATATTTTTGCGAAATCC
ACTTTTTTGCTTGGAAAAACTTAAAGCACTCCATCTAGCCCTTCAGACTT
TACAGAAATCTGTAGCAGTAACCTCTAGAACGTTGTTGTTCTCGGAAATT
CTAACCTAACAATGTTTTGAAGATATCATTTAACCTTTTAAACTTTACTC
AATAACTCGAAATTTTCTTTACTCGAACAAATTTGTGTTCCCCGTGCGGT
TTGGATCCCCNAAGTGTATCGTGATTAAGTAGGAAATCCTATCTAGGTCA
CGTGACATTACAATAGATGGTTCGAGTTATAGAGACTCAATTGTATTACA
TTTTAAACAGGACGCAGAATGCGACGTTGCATTCATGCCAGGTCAAACTT
GTTACCGAGTGAACTGCTACAACGAATCACTATGTCAATCAGTACCGGCA
AATCCAACCAACTTAGCCAGTGGTGAAGTGAGAATCTCCCATATCATTCG
TGGTGGTGGAGCTGGTGATGATGTTGATGAATTTCGAAAGAAAAACGGCG
TCAACCGGAATTCAAGTAAGCAATTAGGTTATAGATTTTTGAAAGGAAGT
AGATTTTCCTTTCTCTCTTCATTTAAAGAATTAATCGACATGTCAAAGAT
TTGAGATTATAGAGATTACCCGGAATAGAATTTCACATTCCCGCAATATG
AAATGCTAGCCAATTTTACAACTTTACTGAATGACCATAAATTGACTGAT
GAATTGGAAACCCTATAAAATTCCCTTTTGAATTTACACCCATGCACCCG
AAACCGGAGTTTCATCTGGTTAGTAAGAGCGACCTTAGTGCAAAAGAAAA
GCATTCGGTTACAATTAAATCCCCGTACTTAGTTGTATGAAAAGGATCAA
GAGTATATGGAGCAATTCGGGGAGAAAAGTGACGCCCCCTCTACCCTGGG
GTAAATATAGCAATCGAAAGATAAGCCTTCCGGTTGCCTTCGACTACGGT
AGCAGACTTTCCTAGTTATATTCACTCATAGTAAGATACAAGATTGAAAT
GTTTCATATTTCTTAGACCCTGGAGATGCACAATGTACTTTCAGTCGAGT
TGAATATGGTAAAAACATTGCTGGTGGTAAACACGCTGGCGAAGTCATTG
ATCTTGGTCCATTAGTTGACATTTATGATTGTGCTAAGAAATGTTGCCAA
CACGATAATTGTGAAGTAGCTCATATTCGGGAGAACAAATGTTATGCTGT
AGATTGTTTTACCAGAGATCTTTGTCGGAAGGTTTCCGTTGATAATTTAA
ATCCGAAACAGAATGCTATTGTTTACATGAACAAAAGAAGTGGCAAAAGA
CAACGACATAAAGGTATGAGTATATTTTGCTTGGCATCGCTTTATCCATC
GATTCTTTATCAGTCTAGTCGTCCGATGTGTGCATAGATATGTTAAATAT
ATCCATTCTATATCACCATAAAGATATTTCTTGGAAGTGACTTACTGAAA
GGTTGTTTTGCTTCACACAAAGTTTATATCTAGTTGGTTGAACGACAGTG
CTTTGTTATTTTTTCACGTGAATCTGGACATCATATGCTATTTCATGGTT
AAGATGAGTCATAGCTAATCAGGGGTGATGGTTGCGTTCTCATAACTGCT
TCATATTTGTTGCTAAACGCAAGAATCTTTAAAATTGACCGACAGAAAGG
CGTTGTTGTTATGTTTTATTCGATTCATTGCTTTCTCTTATCAGATTCTT
GTGGTGATGAATGTGGCAACGGATTATGCAGTCGAAATGGAACATGTTCG
TGTGACGTTGGTTTCAAAGGAGATTCTTGTGATCAAGAAGTCGAGACAGG
TGAGCTGTTTTATTTTAAGAACTTACCTGGTTTACACCTTTTAAATTAGA
AGATCTTAAGGACCAGTCTGATCAGAAGATTTTTGCGTTATACGTTGGTG
TCTCAGAAAACATTTTTTCTCTTGAGCTTTTTCAATCTAAAAAATGTTTA
CCATAAGTAATACCTGGCAGCCTCATTTTTTAAAGAACTACACACCCTGA
ATTCTTGTGTTATCAGGACATTGTGATCCAGTTTGCGGAGAGCATGGTTA
TTGTATGAAAAATGATTCTTGTAAATGTGATGATGGTTGGCAAGGATACA
AATGTCAACATCAAAGTAAGTATTTTTTCTTTATTTTTTCAATGGTAAGA
AGTCTTAACCACTATTTTAGTGAAATTTTGAATTGAAAAGAAAATACCAC
CCTTTTGAAGGGTGGGTAATATTCCGATAAATGTTTCAAGCTTATAAAAC
AAAAAGAGATGGTGATTTATCAGCAAGAAGATCAGCCAGCATTTTACTTT
TGAGGTTCACTGTGCTTCTTTAACATCTAAAAAGTGAAACGGTTTTTTAA
TTTTTTTTTCAACGGGGACAATTTTCTGTTGATCTTTTCAGATAAACTAA
CACCATGTTGAGACAGATGTTTTCGGTAGTAGAGATTGAGACCATGTTCG
CACGTTACTGTCCCATTTCGCCCTGGTACGATTTTCGTTACGGATCGAGT
GTTTTCATATTGGTTTCGGTACGTTTCGGAGAAAGGAAAACGGAGCAGTT
CCATTTCGATGAAGAAAGTGGAGTGAAACGGAACGGGACGGAACATGACG
GAACTGTAACATTTGAACATGGTCTGAATTATTTAATCAAACTTCATTCG
ATTATAATCTGAAAGCTTTCGAAATAGAATAAATGGTGCTTTCTTCTTCG
TTTAGTTGAGTGCTCACCACCTTGTGCCAATGGACTGTGTTTACAAAGCC
ATACAAACCAATGCCGATGTGAGATCGGATGGACTGGCTTGTCATGCAAT
GAATCAACTTCAGGTAAATATGATTTCTACACTTCTATTGATACTTCAAT
AACAATCTACAATCTCAAACAAAATATTTGTCGCAAATTAGTTTTTCACA
GTTTTTGACCCTAGAAAACCCATCTCCCTGCATCCCTTCGGTTACAGTGT
ACAGGGTTGTTAATTTGTATATTCTGGAAACTTCACTATCTTCACCTAGA
AAATAACTTGTTTTGAAGGCTACAAAAAGTTCAAATTTATACTCATCTGT
CTCTACAGATAAACTTGTCTTAGCTTCGTCTGGTGAAGAGGTTTTATTCA
CAGATTCAGAAGTTGAGCCAGAACTCGATATAAAGGTGAGATATTTAATT
TCATAAGTAATGACATTCAATCAAAGTCAAAATATTTGACAAAAAGAAAA
ATAAATAATTTCCGCAATAAATTCTGAAATTGACTATAGAAGATACGGAA
TAATCATTTCTTGCCAGTACGCGCGGTATGGTAAAACATTTTAGAGAATT
ATGATTTGCATAAAGTCAATAATGCAGAATCTTGGTTGAAATACCAGTTT
TTAAAAAGCGCCTTATCAGTATTAGTAAAATTTGAAACTATGCTAATTTC
TCGTTTTATCATCCTTCAGATTCATCAATCACCTCGCGTTCGCGAAAGTG
AATCAATTTCAACGCTAGCGGTAGCTATCGGGTGTGGTGTAGCGGCGGCG
CTTCNTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016680XLOC_016680Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029274-exon-sc0000735-1575043694:50697..50916TCONS_00029274-exon-sc0000735-1575043694:50697..50916Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1575043694:49906..50093TCONS_00029274-exon-sc0000735-1575043694:49906..50093Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1575043694:49152..49356TCONS_00029274-exon-sc0000735-1575043694:49152..49356Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1575043694:48354..48650TCONS_00029274-exon-sc0000735-1575043694:48354..48650Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1575043694:47868..47972TCONS_00029274-exon-sc0000735-1575043694:47868..47972Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1575043694:47552..47650TCONS_00029274-exon-sc0000735-1575043694:47552..47650Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1575043694:46854..46961TCONS_00029274-exon-sc0000735-1575043694:46854..46961Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1575043694:46532..46608TCONS_00029274-exon-sc0000735-1575043694:46532..46608Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1575043694:46160..46247TCONS_00029274-exon-sc0000735-1575043694:46160..46247Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1510915933:50697..50916TCONS_00029274-exon-sc0000735-1510915933:50697..50916Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1510915933:49906..50093TCONS_00029274-exon-sc0000735-1510915933:49906..50093Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1510915933:49152..49356TCONS_00029274-exon-sc0000735-1510915933:49152..49356Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1510915933:48354..48650TCONS_00029274-exon-sc0000735-1510915933:48354..48650Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1510915933:47868..47972TCONS_00029274-exon-sc0000735-1510915933:47868..47972Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1510915933:47552..47650TCONS_00029274-exon-sc0000735-1510915933:47552..47650Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1510915933:46854..46961TCONS_00029274-exon-sc0000735-1510915933:46854..46961Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1510915933:46532..46608TCONS_00029274-exon-sc0000735-1510915933:46532..46608Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1510915933:46160..46247TCONS_00029274-exon-sc0000735-1510915933:46160..46247Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1491911889:50697..50916TCONS_00029274-exon-sc0000735-1491911889:50697..50916Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1491911889:49906..50093TCONS_00029274-exon-sc0000735-1491911889:49906..50093Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1491911889:49152..49356TCONS_00029274-exon-sc0000735-1491911889:49152..49356Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1491911889:48354..48650TCONS_00029274-exon-sc0000735-1491911889:48354..48650Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1491911889:47868..47972TCONS_00029274-exon-sc0000735-1491911889:47868..47972Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1491911889:47552..47650TCONS_00029274-exon-sc0000735-1491911889:47552..47650Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1491911889:46854..46961TCONS_00029274-exon-sc0000735-1491911889:46854..46961Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1491911889:46532..46608TCONS_00029274-exon-sc0000735-1491911889:46532..46608Clytia hemisphaericaexon
TCONS_00029274-exon-sc0000735-1491911889:46160..46247TCONS_00029274-exon-sc0000735-1491911889:46160..46247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000735supercontigsc0000735:46160..50916 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.269002	2.49998	1.57896	0.563197	0.426835	1.82446	2.68748	3.05349	1.87006	2.22163	6.43357	4.41464	3.87818	0.00561301	0.0335014	1.86396	2.91189	1.91672	1.26077	0.676813	0.535601	0.20961	0.0198422	0.0267709	0.0941078
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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