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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029254 ID=TCONS_00029254|Name=TCONS_00029254|organism=Clytia hemisphaerica|type=transcript|length=1341bp
GTGGGAGGACCAGAAACCTTACTGTTACCCGCAAGACCTGAGGAGAGAAA
ATCAATCTTGGGTGAGGAAGTATCAGTGCCATGCCCAAGCCCACGAGGTA
GCTTTAAAGCCCAGCGAGGTATAAGAACAACCTCATGTAGATGGCTATGG
TCAGTACTCCACGAGACCCCATAAGTATGTTGCAAAATCCGAAATTCATC
GTCATATTGCAACACGGATTGCCATGTGTACTTAGTTGCCAGCTCTAAGA
CCTTAATCGCATAAGAAAGGTACTCCTGTACATGGAAAAGGGTGGAAAGT
TTCCCGGAAAAAAGTAACTCgtaaaaaattctcaaattagCAATATTAAA
TTGTTCAACTGTAACGCTAGAAAGTTTGGGTTTAGAGTCCTGTAAAATCA
AGGCAAGTTTACAATTGTTGTCAAAACTTTTTCATCCTCAGCAGGTCGAT
TACGAGAAACGAAGTCCACTATACGTAAAGCTTTACCTCTGGTAACGTCG
TTGGTGCGTGTTGGGCGAAGAAAAAGTTCGTTCTGTGTAAACTGACGAGT
AGAAGAAGGTTCAGCGGTCGAGCCAGAATTCAAAAAGGGAAGAACATTAC
CAAACgaagtttgttgttgttgttgttgagaagAAAGAAGCGGGCGGTGA
AGCAAAGTAGACATGGAATCGGcaggaaaattatttaaaatgtcggaTTG
AGCTGTAAGGTTTTCCCCTGAGGAACTGTTGCGTGTTTCGGGCGGAGGAG
CGGAGCGAGACGAATGTTGTTGACTTCTAGAGTCTTTTAAACGTTGGAGT
TTCTCTGTCTGtcgtttaattttttcaatcaaaacgtTTTCTTCTTCACG
AAGTTGGTTCTCTTTGTCACGTCTGATCGATTCCAGGAGCtcagtttctt
gatttttaagATCTCGAAGATGTTGGCGGTAATGATCCATCTGCTCTGTT
GAGAAGGGACGAGAATCGGGGCTTTTCCTTGTGTTTTCAGCAGATGAGCG
ACGATCTCGTGTAGATGGAGAAGAAGACGGAGACGGCGGTGGAGGTGAAC
CTTGGCAGTTTTTGCTTGGATGACCAAAATCATGTAAGTCATGACTTCTT
TGGCATCCAGGGCATTTTTTCTTTCTGGTACCAGTATCCTCACTGGTTGG
AGTACCAGGTGGAGTAGTCAGGAACATAAGTATTGAAAAGAATAGTCTTT
CAGCAAGCATTTTGACAGATAAACAGTAACAGGAGATAAATatgaaaaca
gcaaaaaacagcagtctgcactgaagaactgaagaactgaaaaaggccCA
TGTGGAAAATCTGTGGCCTTATAAGGGGCGTGAAAGTGAGG Run BLAST on NCBI protein sequence of TCONS_00029254-protein >TCONS_00029254-protein ID=TCONS_00029254-protein|Name=TCONS_00029254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MLAERLFFSILMFLTTPPGTPTSEDTGTRKKKCPGCQRSHDLHDFGHPSK
NCQGSPPPPSPSSSPSTRDRRSSAENTRKSPDSRPFSTEQMDHYRQHLRD
LKNQETELLESIRRDKENQLREEENVLIEKIKRQTEKLQRLKDSRSQQHS
SRSAPPPETRNSSSGENLTAQSDILNNFPADSMSTLLHRPLLSSQQQQQQ
TSFGNVLPFLNSGSTAEPSSTRQFTQNELFLRPTRTNDVTRGKALRIVDF
VSRNRPAEDEKVLTTIVNLP Run BLAST on NCBI transcript from alignment at sc0000731:108528..109868 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029254 ID=TCONS_00029254|Name=TCONS_00029254|organism=Clytia hemisphaerica|type=transcript|length=1341bp|location=Sequence derived from alignment at sc0000731:108528..109868 (Clytia hemisphaerica)
CCTCACTTTCACGCCCCTTATAAGGCCACAGATTTTCCACATGggccttt
ttcagttcttcagttcttcagtgcagactgctgttttttgctgttttcat
ATTTATCTCCTGTTACTGTTTATCTGTCAAAATGCTTGCTGAAAGACTAT
TCTTTTCAATACTTATGTTCCTGACTACTCCACCTGGTACTCCAACCAGT
GAGGATACTGGTACCAGAAAGAAAAAATGCCCTGGATGCCAAAGAAGTCA
TGACTTACATGATTTTGGTCATCCAAGCAAAAACTGCCAAGGTTCACCTC
CACCGCCGTCTCCGTCTTCTTCTCCATCTACACGAGATCGTCGCTCATCT
GCTGAAAACACAAGGAAAAGCCCCGATTCTCGTCCCTTCTCAACAGAGCA
GATGGATCATTACCGCCAACATCTTCGAGATcttaaaaatcaagaaactg
aGCTCCTGGAATCGATCAGACGTGACAAAGAGAACCAACTTCGTGAAGAA
GAAAacgttttgattgaaaaaattaaacgaCAGACAGAGAAACTCCAACG
TTTAAAAGACTCTAGAAGTCAACAACATTCGTCTCGCTCCGCTCCTCCGC
CCGAAACACGCAACAGTTCCTCAGGGGAAAACCTTACAGCTCAAtccgac
attttaaataattttcctgCCGATTCCATGTCTACTTTGCTTCACCGCCC
GCTTCTTTcttctcaacaacaacaacaacaaacttcGTTTGGTAATGTTC
TTCCCTTTTTGAATTCTGGCTCGACCGCTGAACCTTCTTCTACTCGTCAG
TTTACACAGAACGAACTTTTTCTTCGCCCAACACGCACCAACGACGTTAC
CAGAGGTAAAGCTTTACGTATAGTGGACTTCGTTTCTCGTAATCGACCTG
CTGAGGATGAAAAAGTTTTGACAACAATTGTAAACTTGCCTTGATTTTAC
AGGACTCTAAACCCAAACTTTCTAGCGTTACAGTTGAACAATTTAATATT
GctaatttgagaattttttacGAGTTACTTTTTTCCGGGAAACTTTCCAC
CCTTTTCCATGTACAGGAGTACCTTTCTTATGCGATTAAGGTCTTAGAGC
TGGCAACTAAGTACACATGGCAATCCGTGTTGCAATATGACGATGAATTT
CGGATTTTGCAACATACTTATGGGGTCTCGTGGAGTACTGACCATAGCCA
TCTACATGAGGTTGTTCTTATACCTCGCTGGGCTTTAAAGCTACCTCGTG
GGCTTGGGCATGGCACTGATACTTCCTCACCCAAGATTGATTTTCTCTCC
TCAGGTCTTGCGGGTAACAGTAAGGTTTCTGGTCCTCCCAC Coding sequence (CDS) from alignment at sc0000731:108528..109868 >TCONS_00029254 ID=TCONS_00029254|Name=TCONS_00029254|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at sc0000731:108528..109868 (Clytia hemisphaerica)
ATGCTTGCTGAAAGACTATTCTTTTCAATACTTATGTTCCTGACTACTCC
ACCTGGTACTCCAACCAGTGAGGATACTGGTACCAGAAAGAAAAAATGCC
CTGGATGCCAAAGAAGTCATGACTTACATGATTTTGGTCATCCAAGCAAA
AACTGCCAAGGTTCACCTCCACCGCCGTCTCCGTCTTCTTCTCCATCTAC
ACGAGATCGTCGCTCATCTGCTGAAAACACAAGGAAAAGCCCCGATTCTC
GTCCCTTCTCAACAGAGCAGATGGATCATTACCGCCAACATCTTCGAGAT
cttaaaaatcaagaaactgaGCTCCTGGAATCGATCAGACGTGACAAAGA
GAACCAACTTCGTGAAGAAGAAAacgttttgattgaaaaaattaaacgaC
AGACAGAGAAACTCCAACGTTTAAAAGACTCTAGAAGTCAACAACATTCG
TCTCGCTCCGCTCCTCCGCCCGAAACACGCAACAGTTCCTCAGGGGAAAA
CCTTACAGCTCAAtccgacattttaaataattttcctgCCGATTCCATGT
CTACTTTGCTTCACCGCCCGCTTCTTTcttctcaacaacaacaacaacaa
acttcGTTTGGTAATGTTCTTCCCTTTTTGAATTCTGGCTCGACCGCTGA
ACCTTCTTCTACTCGTCAGTTTACACAGAACGAACTTTTTCTTCGCCCAA
CACGCACCAACGACGTTACCAGAGGTAAAGCTTTACGTATAGTGGACTTC
GTTTCTCGTAATCGACCTGCTGAGGATGAAAAAGTTTTGACAACAATTGT
AAACTTGCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029254-exon-sc0000731-1491911889:108528..109868 | TCONS_00029254-exon-sc0000731-1491911889:108528..109868 | Clytia hemisphaerica | exon |
| TCONS_00029254-exon-sc0000731-1510915933:108528..109868 | TCONS_00029254-exon-sc0000731-1510915933:108528..109868 | Clytia hemisphaerica | exon |
| TCONS_00029254-exon-sc0000731-1575043694:108528..109868 | TCONS_00029254-exon-sc0000731-1575043694:108528..109868 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000731 | supercontig | sc0000731:108528..109868 . |
Blast
The following BLAST results are available for this feature:
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