TCONS_00029242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029242
Unique NameTCONS_00029242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029242 ID=TCONS_00029242|Name=TCONS_00029242|organism=Clytia hemisphaerica|type=transcript|length=610bp
AACAAAACTTCCTTCAAAACTAACTTCTTTACAAACCTTCAAATCAATtc
ctttaattttgaatttttatttgacaAGTTGAATATTACTGTAGTTTGtc
ctttttttagttttgtttagtttttatttttccaccAATAATAGTGATAG
TTAATTACTCTATGTAACATTCCCAAACCCTTCTGCGGCCAGGTAAGCCA
AAGAgttttgcatattttaaaagattttgccCCTGATATATGAAAATTCA
ATCAAagttttgcccagctgcccttGAAAATTAGCTCTGTCATTGAATTA
GCTACCTATATACACTATTATGTTATGATGGATGGCACAAACATCTGCCA
TCTGTCGATACACACACCCCATCCCCTCCTCTTACCACTTACTGGGGCAT
TTTATATTACATaaacgaaaaataaacaaaagataTACCAAAGTACTCTC
CATAGCTCTCCACATAGATTAGAAAGCACTGCCATAACAGACACCAGACA
GCCAGACACCAGACAGCCAGACCCCAGAGAGAACCATCCACCATCATGCT
TGCTTGAACCAGAACTCGTATTTATTTCAATGTAGGTACTTAAATAAAAA
CGCATGTGCT
Run BLAST on NCBI

transcript from alignment at sc0000731:11462..12071

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029242 ID=TCONS_00029242|Name=TCONS_00029242|organism=Clytia hemisphaerica|type=transcript|length=610bp|location=Sequence derived from alignment at sc0000731:11462..12071 (Clytia hemisphaerica)
AGCACATGCGTTTTTATTTAAGTACCTACATTGAAATAAATACGAGTTCT
GGTTCAAGCAAGCATGATGGTGGATGGTTCTCTCTGGGGTCTGGCTGTCT
GGTGTCTGGCTGTCTGGTGTCTGTTATGGCAGTGCTTTCTAATCTATGTG
GAGAGCTATGGAGAGTACTTTGGTAtatcttttgtttatttttcgtttAT
GTAATATAAAATGCCCCAGTAAGTGGTAAGAGGAGGGGATGGGGTGTGTG
TATCGACAGATGGCAGATGTTTGTGCCATCCATCATAACATAATAGTGTA
TATAGGTAGCTAATTCAATGACAGAGCTAATTTTCaagggcagctgggca
aaactTTGATTGAATTTTCATATATCAGGggcaaaatcttttaaaatatg
caaaacTCTTTGGCTTACCTGGCCGCAGAAGGGTTTGGGAATGTTACATA
GAGTAATTAACTATCACTATTATTggtggaaaaataaaaactaaacaaaa
ctaaaaaaaggaCAAACTACAGTAATATTCAACTtgtcaaataaaaattc
aaaattaaaggaATTGATTTGAAGGTTTGTAAAGAAGTTAGTTTTGAAGG
AAGTTTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016654XLOC_016654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029242-exon-sc0000731-1491911889:11462..12071TCONS_00029242-exon-sc0000731-1491911889:11462..12071Clytia hemisphaericaexon
TCONS_00029242-exon-sc0000731-1510915933:11462..12071TCONS_00029242-exon-sc0000731-1510915933:11462..12071Clytia hemisphaericaexon
TCONS_00029242-exon-sc0000731-1575043694:11462..12071TCONS_00029242-exon-sc0000731-1575043694:11462..12071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000731supercontigsc0000731:11462..12071 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.176946	0.345101	0.300522	0.490022	0.357933	0.565687	0	0	0.298219	0.46174	0.17927	0.117845	0.706089	0.305533	0.351666	0.593044	0.531332	0.612673	0.188098	0.590493	0.684327	0.876201	0.202883	0.368901	0	0	0.363943	0.38841	0.490992	0.300146
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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