TCONS_00029241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029241
Unique NameTCONS_00029241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029241 ID=TCONS_00029241|Name=TCONS_00029241|organism=Clytia hemisphaerica|type=transcript|length=337bp
GTTTATTCGAGATGTATCAAGGAGAACGACACAACCTCTTTGATCATTAT
TGCTGTTTACGTTGATGATTTTACCCTCGCATCAAACGATATCAATTTGC
TCAAACGGGAGAAGAAGAATCTAGCCGAGAAGTTTGACATGGTCGATCAG
GGAGAAATCAATTACATCCTTGGTATGAGAGTTCGTAGAGATCGACAAGC
TGGGATCATTCGAATTGATCAATCTGCTTATCTTCGCAATGTTCTGCAAC
GATTCGGCATGGCCGAATGCCGACCAATCTCAACACCAATGGAGACAGGA
AAGTCTTTCGAAAAACTTGCTCCTGATGAGAAACCTG
Run BLAST on NCBI

protein sequence of TCONS_00029241-protein

>TCONS_00029241-protein ID=TCONS_00029241-protein|Name=TCONS_00029241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
VYSRCIKENDTTSLIIIAVYVDDFTLASNDINLLKREKKNLAEKFDMVDQ
GEINYILGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMAECRPISTPMETG
KSFEKLAPDEKP
Run BLAST on NCBI

transcript from alignment at sc0000731:6325..6661

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029241 ID=TCONS_00029241|Name=TCONS_00029241|organism=Clytia hemisphaerica|type=transcript|length=337bp|location=Sequence derived from alignment at sc0000731:6325..6661 (Clytia hemisphaerica)
CAGGTTTCTCATCAGGAGCAAGTTTTTCGAAAGACTTTCCTGTCTCCATT
GGTGTTGAGATTGGTCGGCATTCGGCCATGCCGAATCGTTGCAGAACATT
GCGAAGATAAGCAGATTGATCAATTCGAATGATCCCAGCTTGTCGATCTC
TACGAACTCTCATACCAAGGATGTAATTGATTTCTCCCTGATCGACCATG
TCAAACTTCTCGGCTAGATTCTTCTTCTCCCGTTTGAGCAAATTGATATC
GTTTGATGCGAGGGTAAAATCATCAACGTAAACAGCAATAATGATCAAAG
AGGTTGTGTCGTTCTCCTTGATACATCTCGAATAAAC

Coding sequence (CDS) from alignment at sc0000731:6325..6661

>TCONS_00029241 ID=TCONS_00029241|Name=TCONS_00029241|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000731:6325..6661 (Clytia hemisphaerica)
AGGTTTCTCATCAGGAGCAAGTTTTTCGAAAGACTTTCCTGTCTCCATTG
GTGTTGAGATTGGTCGGCATTCGGCCATGCCGAATCGTTGCAGAACATTG
CGAAGATAAGCAGATTGATCAATTCGAATGATCCCAGCTTGTCGATCTCT
ACGAACTCTCATACCAAGGATGTAATTGATTTCTCCCTGATCGACCATGT
CAAACTTCTCGGCTAGATTCTTCTTCTCCCGTTTGAGCAAATTGATATCG
TTTGATGCGAGGGTAAAATCATCAACGTAAACAGCAATAATGATCAAAGA
GGTTGTGTCGTTCTCCTTGATACATCTCGAATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016653XLOC_016653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029241-exon-sc0000731-1491911889:6325..6661TCONS_00029241-exon-sc0000731-1491911889:6325..6661Clytia hemisphaericaexon
TCONS_00029241-exon-sc0000731-1510915933:6325..6661TCONS_00029241-exon-sc0000731-1510915933:6325..6661Clytia hemisphaericaexon
TCONS_00029241-exon-sc0000731-1575043694:6325..6661TCONS_00029241-exon-sc0000731-1575043694:6325..6661Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029241-proteinTCONS_00029241-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000731supercontigsc0000731:6325..6661 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.354256	2.17761	0.672373	0.307026	0	1.01445	0.868953	0.415511	0.957905	0	1.05682	0.566653	1.79029	2.33192	0.279684	0.258221	0	0.339863	0	0.934131	1.44406	0.784269	0	0.340947	0.427596	0.350638	0.380051	0	0.63216	0.433249
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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