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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029239 ID=TCONS_00029239|Name=TCONS_00029239|organism=Clytia hemisphaerica|type=transcript|length=711bp
NTCATCTTTGATCCTTCGCCCAGACTTCCTGTGCCTTCAATTTCTTTGGA
TTCAACATGCTCAACACCATCTCAGTCATTTCATTCTTCACCTTCAACAC
CTCATCCCACACCTTCCTCAAATCTACAAATGCCAAAGACGCCAACAACA
CCATTTTCGTCATTAAAGATTGATATCCCCATTCATTCTACTCCGTCtgt
aaaacatcaaaaacaagCTGCGTCGACTGTTTTGACCAAACTGAATGAAG
AATTCCATTGTTTATATGGGAAAAAAATTACTGATGTTGTTTGTAAAGTT
CCAGAGGCAAAACTGCAAGCAAAACCAACAGAGGCTGAGAGGAAAAAAAG
AGATAGAAAGATCCGAAGAGATGTTAGAGATGAGCTTCAGAATGTTTTAT
ATTCGCGAGATTCTCAAGTTCTCTTTGGAACACGTCAAACAGCATCTCAA
TATGAATCACAAAGAAAGGCAATGTTTATGGAATCTCCTACAGATGCTAA
AGCAAGAACAGAGAAGCGTAAACTAGACGAAGAATCAGGAAAATGCAAGA
AAAAGAGAAGCTCAAAAAACCTTGATCAACTTGACTTTGATAAAGCTGGC
TTGTTGAATCATGTCAACAGTTTACCAAAAGGATCAAAGGTTTGAAACAG
AGGCTTGATAATTTAAATTGAGTACATTTCTTCATGTGAATGTCTGATAT
CACAATTAGCT Run BLAST on NCBI protein sequence of TCONS_00029239-protein >TCONS_00029239-protein ID=TCONS_00029239-protein|Name=TCONS_00029239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
XIFDPSPRLPVPSISLDSTCSTPSQSFHSSPSTPHPTPSSNLQMPKTPTT
PFSSLKIDIPIHSTPSVKHQKQAASTVLTKLNEEFHCLYGKKITDVVCKV
PEAKLQAKPTEAERKKRDRKIRRDVRDELQNVLYSRDSQVLFGTRQTASQ
YESQRKAMFMESPTDAKARTEKRKLDEESGKCKKKRSSKNLDQLDFDKAG
LLNHVNSLPKGSKV Run BLAST on NCBI transcript from alignment at sc0000731:48612..49651+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029239 ID=TCONS_00029239|Name=TCONS_00029239|organism=Clytia hemisphaerica|type=transcript|length=1040bp|location=Sequence derived from alignment at sc0000731:48612..49651+ (Clytia hemisphaerica)
NTCATCTTTGATCCTTCGCCCAGACTTCCTGTGCCTTCAATTTCTTTGGA
TTCAACATGCTCAACACCATCTCAGTCATTTCATTCTTCACCTTCAACAC
CTCATCCCACACCTTCCTCAAATCTACAAATGCCAAAGACGCCAACAACA
CCATTTTCGTCATTAAAGATTGATATCCCCATTCATTCTACTCCGTCtgt
aaaacatcaaaaacaagCTGCGTCGACTGTTTTGACCAAACTGAATGAAG
AATTCCATTGTTTATATGGGAAAAAAATTACTGATGTTGTTTGTAAAGTT
CCAGAGGCAAAACTGCAAGCAAAACCAACAGAGGCTGAGAGGAAAAAAAG
AGATAGAAAGATCCGAAGAGATGTTAGAGATGAGCTTCAGAATGTTTTAT
ATTCGCGAGATTCTCAAGTTCTCTTTGGAACACGTCAAACAGCATCTCAA
TATGAATCACAAAGAAAGGCAATGTTTATGGAATCTCCTACAGATGCTAA
AGCAAGAACAGAGAAGCGTAATCTAGTTTTCATTTCTGTGAACCTAGTGT
TTTTCTAAGGCTAAACTAACATGTATAATTATTGGAAAAACTCCatagtt
ttaaaaattacaacaTAATTAGGAAAATaatgcaattttttaattttagc
gagAGCTTATGTTAGCAAAatgaacaatttttcaaaatactaaATACAAC
CCCAATTTTTGTCTAGAACAAAAAAAGGAACCAATtcgtattttgaaaaa
tttgccaaTATTGCTTCCATTAAGGTATGACATATAATATGACTTGTGTA
TTATAAGCAATAAAATAAATAGTAAACTTTCTATTCTAATTCCTAGGTAA
ACTAGACGAAGAATCAGGAAAATGCAAGAAAAAGAGAAGCTCAAAAAACC
TTGATCAACTTGACTTTGATAAAGCTGGCTTGTTGAATCATGTCAACAGT
TTACCAAAAGGATCAAAGGTTTGAAACAGAGGCTTGATAATTTAAATTGA
GTACATTTCTTCATGTGAATGTCTGATATCACAATTAGCT Coding sequence (CDS) from alignment at sc0000731:48612..49651+ >TCONS_00029239 ID=TCONS_00029239|Name=TCONS_00029239|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at sc0000731:48612..49651+ (Clytia hemisphaerica)
NTCATCTTTGATCCTTCGCCCAGACTTCCTGTGCCTTCAATTTCTTTGGA
TTCAACATGCTCAACACCATCTCAGTCATTTCATTCTTCACCTTCAACAC
CTCATCCCACACCTTCCTCAAATCTACAAATGCCAAAGACGCCAACAACA
CCATTTTCGTCATTAAAGATTGATATCCCCATTCATTCTACTCCGTCtgt
aaaacatcaaaaacaagCTGCGTCGACTGTTTTGACCAAACTGAATGAAG
AATTCCATTGTTTATATGGGAAAAAAATTACTGATGTTGTTTGTAAAGTT
CCAGAGGCAAAACTGCAAGCAAAACCAACAGAGGCTGAGAGGAAAAAAAG
AGATAGAAAGATCCGAAGAGATGTTAGAGATGAGCTTCAGAATGTTTTAT
ATTCGCGAGATTCTCAAGTTCTCTTTGGAACACGTCAAACAGCATCTCAA
TATGAATCACAAAGAAAGGCAATGTTTATGGAATCTCCTACAGATGCTAA
AGCAAGAACAGAGAAGCGTAAACTAGACGAAGAATCAGGAAAATGCAAGA
AAAAGAGAAGCTCAAAAAACCTTGATCAACTTGACTTTGATAAAGCTGGC
TTGTTGAATCATGTCAACAGTTTACCAAAAGGATCAAAGGTTTGANTCAT
CTTTGATCCTTCGCCCAGACTTCCTGTGCCTTCAATTTCTTTGGATTCAA
CATGCTCAACACCATCTCAGTCATTTCATTCTTCACCTTCAACACCTCAT
CCCACACCTTCCTCAAATCTACAAATGCCAAAGACGCCAACAACACCATT
TTCGTCATTAAAGATTGATATCCCCATTCATTCTACTCCGTCtgtaaaac
atcaaaaacaagCTGCGTCGACTGTTTTGACCAAACTGAATGAAGAATTC
CATTGTTTATATGGGAAAAAAATTACTGATGTTGTTTGTAAAGTTCCAGA
GGCAAAACTGCAAGCAAAACCAACAGAGGCTGAGAGGAAAAAAAGAGATA
GAAAGATCCGAAGAGATGTTAGAGATGAGCTTCAGAATGTTTTATATTCG
CGAGATTCTCAAGTTCTCTTTGGAACACGTCAAACAGCATCTCAATATGA
ATCACAAAGAAAGGCAATGTTTATGGAATCTCCTACAGATGCTAAAGCAA
GAACAGAGAAGCGTAAACTAGACGAAGAATCAGGAAAATGCAAGAAAAAG
AGAAGCTCAAAAAACCTTGATCAACTTGACTTTGATAAAGCTGGCTTGTT
GAATCATGTCAACAGTTTACCAAAAGGATCAAAGGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029239-exon-sc0000731-1491911889:48612..49128 | TCONS_00029239-exon-sc0000731-1491911889:48612..49128 | Clytia hemisphaerica | exon |
| TCONS_00029239-exon-sc0000731-1510915933:48612..49128 | TCONS_00029239-exon-sc0000731-1510915933:48612..49128 | Clytia hemisphaerica | exon |
| TCONS_00029239-exon-sc0000731-1575043694:48612..49128 | TCONS_00029239-exon-sc0000731-1575043694:48612..49128 | Clytia hemisphaerica | exon |
| TCONS_00029239-exon-sc0000731-1491911889:49458..49651 | TCONS_00029239-exon-sc0000731-1491911889:49458..49651 | Clytia hemisphaerica | exon |
| TCONS_00029239-exon-sc0000731-1510915933:49458..49651 | TCONS_00029239-exon-sc0000731-1510915933:49458..49651 | Clytia hemisphaerica | exon |
| TCONS_00029239-exon-sc0000731-1575043694:49458..49651 | TCONS_00029239-exon-sc0000731-1575043694:49458..49651 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000731 | supercontig | sc0000731:48612..49651 + |
Blast
The following BLAST results are available for this feature:
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