TCONS_00029229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029229
Unique NameTCONS_00029229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1184

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029229 ID=TCONS_00029229|Name=TCONS_00029229|organism=Clytia hemisphaerica|type=transcript|length=1184bp
CCCAGACCTCGTAGCATTGTTAGAATTGTTTCACCAAAATTCACAAAAGA
AAACAGCCCCATAGATTTTTGAAGACGATAATAACGGTTTCCTCCTGCCT
AGGTGTCTTTAATGACTAGATCCGTCTCTGATTTTTCTTGCATAAAAAGG
GAAGCTTGTGTCTCATTCCTCACCAACAAATCGAGAGAAAAAAGTCTCGG
CAACAAAGCAGTGGAAAGATGGATTTGAAGATTCTCATTTTGGCTTTTCT
TGCAGTGGTAATCATAGaaaaatgcaacaGCTGCAAGATACCAGTTCTCA
GCTCGGATCATAAAGGAGGAAAGTCGGTTAttggaaaatatttcaatatt
gaACGAAAACGCATTAGAGGGCTGagatacaggggtgtaaagaGATTCGT
AGCATACAACTTTCGCTTAGGACTCATCGGTGAAGTAGTAGTTTGGGGCA
ATAAAAATGGTGGAAGTAAGGGAGATGCTCATGGAAGGTTTTCGAACAGA
GGCAATGTTACTGCAAGACCAGGACAATGGCAGCCTATGGACTGTTCCAT
TTGCGCCAATCTTCACAATTCCAATTCTTCATGTTCGATCGATGTCCTGG
GTACGGCGCATGGACGAGCTTCTTATAGCGATGGACGGTTTTTTAACTTC
AATCGAGCTCAAGTGACCGGACTTGGAAGAGACGGCAGAATCCAATTTCT
TGCCTATAATCCAAGAAATTCCTTGCTGGgatatgtttatgtttatggcA
GAGCTAGTGGTGGTGGAATCGGAGATGCTCATGGGTGGTTCAATAGTCAT
GGTGGAATCGGTAGAACCCGTGGCCAATGGCAGGTGGGAGATAAAATGAT
TCCCATCGATCAGTCATACTGCGTTCGAAGCTGTCCATTGTAAATGGAAA
TGATATCAGGTCCAAGTCTTATTTTTCTTACGTATTGTAACTTGATGTTA
ATCATAATTTGTTAATCATAATTTGATGTTTATTTCACATAAGGCCGACC
TTAAGTGTTCACCATCACCTTCGAATCATAACGTCGGACCAAGAATGCTT
AATTTGTTCTattgaaatgtcattttctTAGGGGATTTATTTCATTCATt
gtattttatttcatattttgtaaCTTTACCATTTAACTTAATCAtggaga
aaagttttttttaacgcAACTGCTTGAAACTTTT
Run BLAST on NCBI

protein sequence of TCONS_00029229-protein

>TCONS_00029229-protein ID=TCONS_00029229-protein|Name=TCONS_00029229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MDLKILILAFLAVVIIEKCNSCKIPVLSSDHKGGKSVIGKYFNIERKRIR
GLRYRGVKRFVAYNFRLGLIGEVVVWGNKNGGSKGDAHGRFSNRGNVTAR
PGQWQPMDCSICANLHNSNSSCSIDVLGTAHGRASYSDGRFFNFNRAQVT
GLGRDGRIQFLAYNPRNSLLGYVYVYGRASGGGIGDAHGWFNSHGGIGRT
RGQWQVGDKMIPIDQSYCVRSCPL
Run BLAST on NCBI

transcript from alignment at sc0000730:65199..67294-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029229 ID=TCONS_00029229|Name=TCONS_00029229|organism=Clytia hemisphaerica|type=transcript|length=2096bp|location=Sequence derived from alignment at sc0000730:65199..67294- (Clytia hemisphaerica)
CCCAGACCTCGTAGCATTGTTAGAATTGTTTCACCAAAATTCACAAAAGA
AAACAGCCCCATAGATTTTTGAAGACGATAATAACGGTTTCCTCCTGCCT
AGGTGTCTTTAATGACTAGATCCGTCTCTGATTTTTCTTGCATAAAAAGG
GAAGCTTGTGTCTCATTCCTCACCAACAAATCGAGAGAAAAAAGTCTCGG
CAACAAAGCAGTGGAAAGATGGATTTGAAGATTCTCATTTTGGCTTTTCT
TGCAGTGGTAATCATAGGTTTGTAATTTCTTTCGAGAAAGTTTTTTCATT
AAAAACTTGGAGAAAGTCAGAGTTTCTTGGCAAAACTTTTTGTCTCTGTC
GATTTTAAATCATACGGTAAATAGAAATAAGTTTCTTCAGATGTTGAGAA
TGCTATCTTTTCTTTTCCTTTTTTAGAAAAATGCAACAGCTGCAAGATAC
CAGTTCTCAGCTCGGATCATAAAGGAGGAAAGTCGGTTATTGGAAAATAT
TTCAATATTGAACGAAAACGCATTAGAGGGCTGAGATACAGGGGTGTAAA
GAGATTCGTAGCATACAACTTTCGCTTAGGACTCATCGGTGAAGTAGTAG
TTTGGGGCAATAAAAATGGTGGAAGTAAGGGAGATGCTCATGGAAGGTTT
TCGAACAGAGGCAATGTTACTGCAAGACCAGGACAATGGCAGCCTATGGA
CTGTTCCATTTGCGCCAATCGTATGTCGATATTTTTTCAAAGTTTTGACC
CTTATAGTATTCTCTTTTCTTAGAAAAATTAAGATTAGGTTCATTTCTCA
GCCCCAGAAAATATAGCCTCACTATCAATTTGCCCTCAGGGGGTATTAAT
AAAGAATCGCTAAATTTGTTATCGAATATGAATAAGATCAATGAAATTCA
TGAAATTTCAAAGAAAAATTTCGATCCTGTTGCTTGCATAAAGGATATAT
ATTTAAAGCCTAGTTGATACAATTCGTTTTTAGTACAGGCAAGGTACAGG
CTATTTTATTTTCTACATCACCGCGGTAATCAACTTTTTATGGTTGAGCT
GAGCACTCTTTCAAAATAAAGATATAAGTTTACAAAGATAACAACACTAG
AAAATAGTTCCTGAATTCCAAAGTCAATTAAAGGGTGGCAATATACAAAT
CATTTTTTAGAATACGTCTTTCTCGAAGGGAAATCTGCTCAAACTAGGCT
TTTACCTTTAAGTTGAGTAGGAAATAGCATTTAATCACAAAACAATCCTA
TCGAGATCAGTTAATTATGGATAGAATATAGAATTGAAACATTTTCCACA
CCTTCTTTTAGTTCACAATTCCAATTCTTCATGTTCGATCGATGTCCTGG
GTACGGCGCATGGACGAGCTTCTTATAGCGATGGACGGTTTTTTAACTTC
AATCGAGCTCAAGTGACCGGACTTGGAAGAGACGGCAGAATCCAATTTCT
TGCCTATAATCCAAGAAATTCCTTGCTGGGTAAGGTTTTCTTTCGCGTTT
CAGTTTTGGAAAAATTGGTTTTGTCGTGTACAACTGTAACATTTTGACGT
AGTTCACGAACTCAATGTTTTTCTATTCGTACTTTTCTTACTGAAATTAA
TAGCAATTTTATTTCAATGTGTTTTTAACATTTCAATTTAGGATATGTTT
ATGTTTATGGCAGAGCTAGTGGTGGTGGAATCGGAGATGCTCATGGGTGG
TTCAATAGTCATGGTGGAATCGGTAGAACCCGTGGCCAATGGCAGGTGGG
AGATAAAATGATTCCCATCGATCAGTCATACTGCGTTCGAAGCTGTCCAT
TGTAAATGGAAATGATATCAGGTCCAAGTCTTATTTTTCTTACGTATTGT
AACTTGATGTTAATCATAATTTGTTAATCATAATTTGATGTTTATTTCAC
ATAAGGCCGACCTTAAGTGTTCACCATCACCTTCGAATCATAACGTCGGA
CCAAGAATGCTTAATTTGTTCTATTGAAATGTCATTTTCTTAGGGGATTT
ATTTCATTCATTGTATTTTATTTCATATTTTGTAACTTTACCATTTAACT
TAATCATGGAGAAAAGTTTTTTTTAACGCAACTGCTTGAAACTTTT

Coding sequence (CDS) from alignment at sc0000730:65199..67294-

>TCONS_00029229 ID=TCONS_00029229|Name=TCONS_00029229|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at sc0000730:65199..67294- (Clytia hemisphaerica)
GATATGTTTATGTTTATGGCAGAGCTAGTGGTGGTGGAATCGGAGATGCT
CATGGGTGGTTCAATAGTCATGGTGGAATCGGTAGAACCCGTGGCCAATG
GCAGGTGGGAGATAAAATGATTCCCATCGATCAGTCATACTGCGTTCGAA
GCTGTCCATTGTAATTCACAATTCCAATTCTTCATGTTCGATCGATGTCC
TGGGTACGGCGCATGGACGAGCTTCTTATAGCGATGGACGGTTTTTTAAC
TTCAATCGAGCTCAAGTGACCGGACTTGGAAGAGACGGCAGAATCCAATT
TCTTGCCTATAATCCAAGAAATTCCTTGCTGGAAAAATGCAACAGCTGCA
AGATACCAGTTCTCAGCTCGGATCATAAAGGAGGAAAGTCGGTTATTGGA
AAATATTTCAATATTGAACGAAAACGCATTAGAGGGCTGAGATACAGGGG
TGTAAAGAGATTCGTAGCATACAACTTTCGCTTAGGACTCATCGGTGAAG
TAGTAGTTTGGGGCAATAAAAATGGTGGAAGTAAGGGAGATGCTCATGGA
AGGTTTTCGAACAGAGGCAATGTTACTGCAAGACCAGGACAATGGCAGCC
TATGGACTGTTCCATTTGCGCCAATCATGGATTTGAAGATTCTCATTTTG
GCTTTTCTTGCAGTGGTAATCATAGGATATGTTTATGTTTATGGCAGAGC
TAGTGGTGGTGGAATCGGAGATGCTCATGGGTGGTTCAATAGTCATGGTG
GAATCGGTAGAACCCGTGGCCAATGGCAGGTGGGAGATAAAATGATTCCC
ATCGATCAGTCATACTGCGTTCGAAGCTGTCCATTGTAATTCACAATTCC
AATTCTTCATGTTCGATCGATGTCCTGGGTACGGCGCATGGACGAGCTTC
TTATAGCGATGGACGGTTTTTTAACTTCAATCGAGCTCAAGTGACCGGAC
TTGGAAGAGACGGCAGAATCCAATTTCTTGCCTATAATCCAAGAAATTCC
TTGCTGGAAAAATGCAACAGCTGCAAGATACCAGTTCTCAGCTCGGATCA
TAAAGGAGGAAAGTCGGTTATTGGAAAATATTTCAATATTGAACGAAAAC
GCATTAGAGGGCTGAGATACAGGGGTGTAAAGAGATTCGTAGCATACAAC
TTTCGCTTAGGACTCATCGGTGAAGTAGTAGTTTGGGGCAATAAAAATGG
TGGAAGTAAGGGAGATGCTCATGGAAGGTTTTCGAACAGAGGCAATGTTA
CTGCAAGACCAGGACAATGGCAGCCTATGGACTGTTCCATTTGCGCCAAT
CATGGATTTGAAGATTCTCATTTTGGCTTTTCTTGCAGTGGTAATCATAG
GATATGTTTATGTTTATGGCAGAGCTAGTGGTGGTGGAATCGGAGATGCT
CATGGGTGGTTCAATAGTCATGGTGGAATCGGTAGAACCCGTGGCCAATG
GCAGGTGGGAGATAAAATGATTCCCATCGATCAGTCATACTGCGTTCGAA
GCTGTCCATTGTAATTCACAATTCCAATTCTTCATGTTCGATCGATGTCC
TGGGTACGGCGCATGGACGAGCTTCTTATAGCGATGGACGGTTTTTTAAC
TTCAATCGAGCTCAAGTGACCGGACTTGGAAGAGACGGCAGAATCCAATT
TCTTGCCTATAATCCAAGAAATTCCTTGCTGGAAAAATGCAACAGCTGCA
AGATACCAGTTCTCAGCTCGGATCATAAAGGAGGAAAGTCGGTTATTGGA
AAATATTTCAATATTGAACGAAAACGCATTAGAGGGCTGAGATACAGGGG
TGTAAAGAGATTCGTAGCATACAACTTTCGCTTAGGACTCATCGGTGAAG
TAGTAGTTTGGGGCAATAAAAATGGTGGAAGTAAGGGAGATGCTCATGGA
AGGTTTTCGAACAGAGGCAATGTTACTGCAAGACCAGGACAATGGCAGCC
TATGGACTGTTCCATTTGCGCCAATCATGGATTTGAAGATTCTCATTTTG
GCTTTTCTTGCAGTGGTAATCATAGGATATGTTTATGTTTATGGCAGAGC
TAGTGGTGGTGGAATCGGAGATGCTCATGGGTGGTTCAATAGTCATGGTG
GAATCGGTAGAACCCGTGGCCAATGGCAGGTGGGAGATAAAATGATTCCC
ATCGATCAGTCATACTGCGTTCGAAGCTGTCCATTGTAATTCACAATTCC
AATTCTTCATGTTCGATCGATGTCCTGGGTACGGCGCATGGACGAGCTTC
TTATAGCGATGGACGGTTTTTTAACTTCAATCGAGCTCAAGTGACCGGAC
TTGGAAGAGACGGCAGAATCCAATTTCTTGCCTATAATCCAAGAAATTCC
TTGCTGGAAAAATGCAACAGCTGCAAGATACCAGTTCTCAGCTCGGATCA
TAAAGGAGGAAAGTCGGTTATTGGAAAATATTTCAATATTGAACGAAAAC
GCATTAGAGGGCTGAGATACAGGGGTGTAAAGAGATTCGTAGCATACAAC
TTTCGCTTAGGACTCATCGGTGAAGTAGTAGTTTGGGGCAATAAAAATGG
TGGAAGTAAGGGAGATGCTCATGGAAGGTTTTCGAACAGAGGCAATGTTA
CTGCAAGACCAGGACAATGGCAGCCTATGGACTGTTCCATTTGCGCCAAT
CATGGATTTGAAGATTCTCATTTTGGCTTTTCTTGCAGTGGTAATCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016642XLOC_016642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029229-exon-sc0000730-1575043694:67028..67294TCONS_00029229-exon-sc0000730-1575043694:67028..67294Clytia hemisphaericaexon
TCONS_00029229-exon-sc0000730-1575043694:66575..66868TCONS_00029229-exon-sc0000730-1575043694:66575..66868Clytia hemisphaericaexon
TCONS_00029229-exon-sc0000730-1575043694:65816..65983TCONS_00029229-exon-sc0000730-1575043694:65816..65983Clytia hemisphaericaexon
TCONS_00029229-exon-sc0000730-1575043694:65199..65653TCONS_00029229-exon-sc0000730-1575043694:65199..65653Clytia hemisphaericaexon
TCONS_00029229-exon-sc0000730-1510915933:67028..67294TCONS_00029229-exon-sc0000730-1510915933:67028..67294Clytia hemisphaericaexon
TCONS_00029229-exon-sc0000730-1510915933:66575..66868TCONS_00029229-exon-sc0000730-1510915933:66575..66868Clytia hemisphaericaexon
TCONS_00029229-exon-sc0000730-1510915933:65816..65983TCONS_00029229-exon-sc0000730-1510915933:65816..65983Clytia hemisphaericaexon
TCONS_00029229-exon-sc0000730-1510915933:65199..65653TCONS_00029229-exon-sc0000730-1510915933:65199..65653Clytia hemisphaericaexon
TCONS_00029229-exon-sc0000730-1491911889:67028..67294TCONS_00029229-exon-sc0000730-1491911889:67028..67294Clytia hemisphaericaexon
TCONS_00029229-exon-sc0000730-1491911889:66575..66868TCONS_00029229-exon-sc0000730-1491911889:66575..66868Clytia hemisphaericaexon
TCONS_00029229-exon-sc0000730-1491911889:65816..65983TCONS_00029229-exon-sc0000730-1491911889:65816..65983Clytia hemisphaericaexon
TCONS_00029229-exon-sc0000730-1491911889:65199..65653TCONS_00029229-exon-sc0000730-1491911889:65199..65653Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029229-proteinTCONS_00029229-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000730supercontigsc0000730:65199..67294 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0354835	0	0	0.098141	0	0.0630197	0.283959	0.122652	0.0759621	0.170991	0.0969353	111.889	90.5723	0.020662	0.0958639	0.13658	0.037716	499.382	541.83	0.316633	0.102962	0.0834422	0	0.0781351	0.348669	0	0.0532486	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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