TCONS_00029205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029205
Unique NameTCONS_00029205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029205 ID=TCONS_00029205|Name=TCONS_00029205|organism=Clytia hemisphaerica|type=transcript|length=449bp
CTTTCAAATATTTGGCATGTTGAAATTAACCTAATTAGTTTTTGTCAATT
TCGATGACGAGGTCATCATTTTGGCCCTGTTTGTTACCCGAATCTGGACA
CGTCTATTCcgtttcttttattctttgtcAAATTGGTCGTAAGATCTcac
ccgggggagggggtactatgACAAAACGTGTGATTGGTaggtgcgagcca
taagggtactaAGGTGTGAAAGGGTATCTTAAGTCTTTTCAAGGGGCACA
TAATCATAGATTTTCTCTAAATgggttcaaaaatttcttttggttaAAGA
TTTCGCTTATTTTGGTtaaaactgtttaaaattaaccaGTTACCTGGTGT
TACATAAATATTCCAAGAGACTAGCTTTTAGTTATCACCatagtttttta
ttatttgagTTCTGTTTTGACTAAAAGCACGTTGTACACGAAGTAGAAC
Run BLAST on NCBI

transcript from alignment at sc0000728:80585..81033

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029205 ID=TCONS_00029205|Name=TCONS_00029205|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at sc0000728:80585..81033 (Clytia hemisphaerica)
GTTCTACTTCGTGTACAACGTGCTTTTAGTCAAAACAGAActcaaataat
aaaaaactatGGTGATAACTAAAAGCTAGTCTCTTGGAATATTTATGTAA
CACCAGGTAACtggttaattttaaacagttttaACCAAAATAAGCGAAAT
CTTtaaccaaaagaaatttttgaacccATTTAGAGAAAATCTATGATTAT
GTGCCCCTTGAAAAGACTTAAGATACCCTTTCACACCTtagtacccttat
ggctcgcacctACCAATCACACGTTTTGTcatagtaccccctcccccggg
tgAGATCTTACGACCAATTTgacaaagaataaaagaaacgGAATAGACGT
GTCCAGATTCGGGTAACAAACAGGGCCAAAATGATGACCTCGTCATCGAA
ATTGACAAAAACTAATTAGGTTAATTTCAACATGCCAAATATTTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016623XLOC_016623Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029205-exon-sc0000728-1491911889:80585..81033TCONS_00029205-exon-sc0000728-1491911889:80585..81033Clytia hemisphaericaexon
TCONS_00029205-exon-sc0000728-1510915933:80585..81033TCONS_00029205-exon-sc0000728-1510915933:80585..81033Clytia hemisphaericaexon
TCONS_00029205-exon-sc0000728-1575043694:80585..81033TCONS_00029205-exon-sc0000728-1575043694:80585..81033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000728supercontigsc0000728:80585..81033 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.443472	0.576606	0.167374	0	0.199349	0.472584	1.71046	1.42339	0.124568	0.617192	0.299531	0.49225	0.491565	0.408396	0.335757	0.180159	0.110971	0.796191	1.72854	0.328872	0.285849	0.418282	0.84746	0.616371	0.634848	1.27482	0	0.216323	0.656292	0.167164
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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