TCONS_00029198 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00029198
Unique Name	TCONS_00029198
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2538

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000728:140693..143230-

transcript sequence

>TCONS_00029198 ID=TCONS_00029198|Name=TCONS_00029198|organism=Clytia hemisphaerica|type=transcript|length=2538bp
aTGGGTTTGATTCGCACTTCAACAGCTCTTTTTGCTTTGGTTGTATTGTT
TGTCAACACGAAAGCTACATCACCAGATCCGGCATGCAACATCGACGCCG
TACTTTACTCCACTCAAACTGACGACATCTACTTCTTTAAAGACGACATG
TACGCCAGATGGAACGTCAAGTCTGACCGGATGTATTATTACGGACAAAC
GAAAGACCTGATCAACGGTTTAAAGACACCTATAGACGCTGTCATCGAGA
CAGACATTTTTGgtactcaaaaaatatttttcttcagcGGCAATCAAGTT
CAAATTTATGATCATTTTCACAAAAGCCCACTCGATACAATCGATTTGAA
TGACTTTGCTGTTGGTCTACCAGAATCAATCGATGCTGTCTTATTCCTTG
AGGGTACCTTCTACTTCTTTAAAGATTACCATATCTACTTCATGGGCATC
GAAAAGAAGATAGTATATGGGCCATTCAATACCTCTGCCATTTTTCTAGG
CCTCAAAAGTCCTGTAGATGCAGCTGTATTGAACACTTTTCATGAAGGCC
ATGAAAGTGCTTACTTATTTAGGAGTGCTTACTTATTTAGCGGTCAGAAT
TATTATCTTACTAACTCAACGGATGAGCTTACTCCTATCGAAAACAGATG
GAAAGGACTATTAGGCTCACCACTCTTTGCCAAATGTGAAATCAATTGCA
ATACTGTCACCATCTCAAACGATGATTGGAAATTTGGGTCAATTTCGTAT
AACATGTCAATGAATGAAACCTATACTCGCTCTATTGGTAAGATACAATA
GTGTCTTTTAAACCCTTGCGTTTACCCAAAACCTAAGAAACATTTTTATA
CTATATTACTGATCCCTAGTTTTCAGCCCCTGCCTGCCTAATTCTTTGGA
GTACCATTACTCGACAGCTGTTTGTATAATTGAATAAAGGTTGAtctgat
tttcttttgatagaGCGCCGTTTGACGTCAGGCAAAGCTTTAACACTACA
ATCAGTTCTTTATGAGTGCACTTAAAAAAAATCCGATCAAAGATGCAGGA
CGAGACTTAGTTTAGGACTCTTAGGACGTAGTTTTAGTTTGTTaacattt
tactattttatGTCCCTTTATATACCttaaaatacctaaaatatTTATCA
CTTTTTTTCCGCAACTCTCTTGTAATGATCTCCGGAGTTTGAATTAACTT
CTTTTTCTCCTTTGTAAAATTAAATTACGAGACAATGAACAAAGCCAATG
GTAATTTAACTATCGTATTTTCCACTTTCAGGCATCAAAAACTTCACCAA
GTACACAACAGACCAGGTCCAGATTGATTACAATTTCTCATACAACGAAT
ACTTCTCCTTCTTACAAAGCGGTGGCGTGAACGTCAAACAAAACACATCT
TTCGTTGTCACAACACCAGATTTCTCCAATATCCGTGATTCCATCAATAT
CACCAAATTACCAAGTGGTGACAAGCATTATTATTTCAGCTACGGAATAA
AAACAGAACGCGAAGACACGATCAAAGATCACATGCTTTGCACCAGTGTT
ATTGGCGATCGAAGAAAATGTACAGTTTTCTTGAATCAATACAACATCCA
AGTTCCATATACCATCGTGTGGAATCATAAGGTTAAGAGTGCCTCGTGCA
AATCTCATGGTGTCACTGACATTTTAATTGCTCATATCGGTAAAATCAAC
GAGCCTGCCGCCAAGGATATGAGCGATCGGACTGAACTCTAACCTACGTG
ATAGTTACGTAAAACGTTGTCATGTGTGGTGATTTCCGAAAACtgtactt
tttcttttttgatgtttcatagtaacattaatttttttattagaatgatt
gtataataaaaacaaacaatatcattaaagattatttttcaagAACAGCA
ACTCTCCCTGGGGGTATTTAGGCAAGTGGAGGGCacgggtatgtgccacc
cttaaggcTCCCTTTTTTGGACCTTCAAAGTCCCACTATGGGTCGCAAAA
ATCACAATTTCCATTTTAAGCCCCCTCCCCCCCCTAAGGATCATAAAAGA
AGTGAAATTATCAATATTTACTCccaaaaaaaaaggatttctgGATaaaa
gtcccactaagggtccgaaaatctaaaaaactcgttttttacgatttttc
gaaaatcagccGGCACCACCTCGTCATTtggcaaacctagtacccccaaA
CCCGaatactttcatttttattttaacaatACTTTTTAGGATTCCTGCAT
TGGAATTATTGCGCTAATTGTTATCTTTAGAATATGATATATGTCTTGAA
CAATAAATAGATTTACATTATAAATGTTCTGTACCTCGTGTTTATTAAGG
CTTGTCCAAAAAGGACATAACTTTGGTGCAGAAAATTGGGCGCCTTGGAC
ATATTcatttatacctttaaagaagcgtatCATGATgtagaattcaaaaa
tcacgGTTGATAAAAttattaccctgagtatcagaggttaagttttcaaa
gaatatattaacctctgaagaccaataatagaaatttt

Run BLAST on NCBI

transcript from alignment at sc0000728:140693..143230-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00029198 ID=TCONS_00029198|Name=TCONS_00029198|organism=Clytia hemisphaerica|type=transcript|length=2538bp|location=Sequence derived from alignment at sc0000728:140693..143230- (Clytia hemisphaerica)
ATGGGTTTGATTCGCACTTCAACAGCTCTTTTTGCTTTGGTTGTATTGTT
TGTCAACACGAAAGCTACATCACCAGATCCGGCATGCAACATCGACGCCG
TACTTTACTCCACTCAAACTGACGACATCTACTTCTTTAAAGACGACATG
TACGCCAGATGGAACGTCAAGTCTGACCGGATGTATTATTACGGACAAAC
GAAAGACCTGATCAACGGTTTAAAGACACCTATAGACGCTGTCATCGAGA
CAGACATTTTTGGTACTCAAAAAATATTTTTCTTCAGCGGCAATCAAGTT
CAAATTTATGATCATTTTCACAAAAGCCCACTCGATACAATCGATTTGAA
TGACTTTGCTGTTGGTCTACCAGAATCAATCGATGCTGTCTTATTCCTTG
AGGGTACCTTCTACTTCTTTAAAGATTACCATATCTACTTCATGGGCATC
GAAAAGAAGATAGTATATGGGCCATTCAATACCTCTGCCATTTTTCTAGG
CCTCAAAAGTCCTGTAGATGCAGCTGTATTGAACACTTTTCATGAAGGCC
ATGAAAGTGCTTACTTATTTAGGAGTGCTTACTTATTTAGCGGTCAGAAT
TATTATCTTACTAACTCAACGGATGAGCTTACTCCTATCGAAAACAGATG
GAAAGGACTATTAGGCTCACCACTCTTTGCCAAATGTGAAATCAATTGCA
ATACTGTCACCATCTCAAACGATGATTGGAAATTTGGGTCAATTTCGTAT
AACATGTCAATGAATGAAACCTATACTCGCTCTATTGGTAAGATACAATA
GTGTCTTTTAAACCCTTGCGTTTACCCAAAACCTAAGAAACATTTTTATA
CTATATTACTGATCCCTAGTTTTCAGCCCCTGCCTGCCTAATTCTTTGGA
GTACCATTACTCGACAGCTGTTTGTATAATTGAATAAAGGTTGATCTGAT
TTTCTTTTGATAGAGCGCCGTTTGACGTCAGGCAAAGCTTTAACACTACA
ATCAGTTCTTTATGAGTGCACTTAAAAAAAATCCGATCAAAGATGCAGGA
CGAGACTTAGTTTAGGACTCTTAGGACGTAGTTTTAGTTTGTTAACATTT
TACTATTTTATGTCCCTTTATATACCTTAAAATACCTAAAATATTTATCA
CTTTTTTTCCGCAACTCTCTTGTAATGATCTCCGGAGTTTGAATTAACTT
CTTTTTCTCCTTTGTAAAATTAAATTACGAGACAATGAACAAAGCCAATG
GTAATTTAACTATCGTATTTTCCACTTTCAGGCATCAAAAACTTCACCAA
GTACACAACAGACCAGGTCCAGATTGATTACAATTTCTCATACAACGAAT
ACTTCTCCTTCTTACAAAGCGGTGGCGTGAACGTCAAACAAAACACATCT
TTCGTTGTCACAACACCAGATTTCTCCAATATCCGTGATTCCATCAATAT
CACCAAATTACCAAGTGGTGACAAGCATTATTATTTCAGCTACGGAATAA
AAACAGAACGCGAAGACACGATCAAAGATCACATGCTTTGCACCAGTGTT
ATTGGCGATCGAAGAAAATGTACAGTTTTCTTGAATCAATACAACATCCA
AGTTCCATATACCATCGTGTGGAATCATAAGGTTAAGAGTGCCTCGTGCA
AATCTCATGGTGTCACTGACATTTTAATTGCTCATATCGGTAAAATCAAC
GAGCCTGCCGCCAAGGATATGAGCGATCGGACTGAACTCTAACCTACGTG
ATAGTTACGTAAAACGTTGTCATGTGTGGTGATTTCCGAAAACTGTACTT
TTTCTTTTTTGATGTTTCATAGTAACATTAATTTTTTTATTAGAATGATT
GTATAATAAAAACAAACAATATCATTAAAGATTATTTTTCAAGAACAGCA
ACTCTCCCTGGGGGTATTTAGGCAAGTGGAGGGCACGGGTATGTGCCACC
CTTAAGGCTCCCTTTTTTGGACCTTCAAAGTCCCACTATGGGTCGCAAAA
ATCACAATTTCCATTTTAAGCCCCCTCCCCCCCCTAAGGATCATAAAAGA
AGTGAAATTATCAATATTTACTCCCAAAAAAAAAGGATTTCTGGATAAAA
GTCCCACTAAGGGTCCGAAAATCTAAAAAACTCGTTTTTTACGATTTTTC
GAAAATCAGCCGGCACCACCTCGTCATTTGGCAAACCTAGTACCCCCAAA
CCCGAATACTTTCATTTTTATTTTAACAATACTTTTTAGGATTCCTGCAT
TGGAATTATTGCGCTAATTGTTATCTTTAGAATATGATATATGTCTTGAA
CAATAAATAGATTTACATTATAAATGTTCTGTACCTCGTGTTTATTAAGG
CTTGTCCAAAAAGGACATAACTTTGGTGCAGAAAATTGGGCGCCTTGGAC
ATATTCATTTATACCTTTAAAGAAGCGTATCATGATGTAGAATTCAAAAA
TCACGGTTGATAAAATTATTACCCTGAGTATCAGAGGTTAAGTTTTCAAA
GAATATATTAACCTCTGAAGACCAATAATAGAAATTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_016617	XLOC_016617	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00029198-exon-sc0000728-1575043694:140693..143230	TCONS_00029198-exon-sc0000728-1575043694:140693..143230	Clytia hemisphaerica	exon
TCONS_00029198-exon-sc0000728-1510915933:140693..143230	TCONS_00029198-exon-sc0000728-1510915933:140693..143230	Clytia hemisphaerica	exon
TCONS_00029198-exon-sc0000728-1491911889:140693..143230	TCONS_00029198-exon-sc0000728-1491911889:140693..143230	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000728	supercontig	sc0000728:140693..143230 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0460559	0	0.060341	0.0385376	0	0.0324811	0.0196326	0	0.0453709	0.0349013	0	0	0.0522791	0	0	0.0402408	0	0.0945515	0	0	0.134517	0	0	0	0.310117	0.705004	7.85747	2.74323	1.52281	1.43639

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00029198 vs. Swiss-Prot (Human)

BLAST of TCONS_00029198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00029198 (transcript) - C. hemisphaerica