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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029192 ID=TCONS_00029192|Name=TCONS_00029192|organism=Clytia hemisphaerica|type=transcript|length=2575bp
tcagaTGGGTTTGATTCGCACTTCAACAGCTTTTTTTGCTTTGGTTGTAT
TGTTTGTCAACACGAAAGCTACATCACCAGATCCGTCATGCAACATCGAC
GCCGTACTTTACTCCACTCAAAATGACGACATTTACTTCTTTAAAGACAA
CATGTACGCCAGATGGAACGTCAAGTCTGACCGGATGTATTATTACGGGC
AAACGAAAGACCTGATCGACGGTTTAAAGACACCTATAGACGCAGCCATT
GAGACAAATCTTTATGGTactcaacaaattttttttttcagcggCAATCA
AGTTCAAATTTACGATCATTTTCACAAAAGCCCACTGAATACAATTGATT
TGAAAGACTTTGCTGTTGGTCTACCAGAATCAATCGATGCTACCTTCTTC
ATGCAGAGTACCTTTTACTTCTTTAAAGATTACCATATTTACTTCATGTT
TGTCGCAGAGAAAAAAGTGCATGGACCATTCAATATCACTAATTTTTTTC
CTAATCTCAAAGGTCCTGTAAATGCGGCTGTATTGAACACTTTCCATGAA
GGCCGTGATACTGCTTACTTATTTAGCGGTCAGAATTATTAtctttttgc
tgagtcagcggAAAAGGTCATTCCTATCGAAAAAAGATGGAAAGGACTTT
TAAATTCACCACTCTTTGCCAAATGTGAAATCGATTGCAATACTGTCACC
ATCTCAAACGATGATTGGAAATTTGGGTCAATTTCGTATAACATGTCAAT
GAATGACACCTATACTCGCTCTATTGGTAAGATACAATTGTGAGGTGTCT
TTTAAACCCTTACGTTTTGTCAAAAGCCTAAGAAATCTTCTTGTACTATA
TTGATAATCCCTAGTGTTCCATCATTGAGCTTTATATATACTCTGGAGAA
AATTCTTCAGCCCTGCCTGCCGAAATCTTTGTAGTACCATTACTCGATAG
CTATGCGTATAAATGAATAAACACTGATCTGCTTTTTCTTTGATAGAGCG
CCGTTTGACGCCAGTCAAAGCTTTACCACTAAAACGGGTTCTTTGTGAGt
gccactttaaaaaaaaactcccaTCAAAGATGAAGGATAAGACTTTATTT
AGAACCAGTGGTTTGTCTGCTGTCTGGGGACGATAATCCTTCTTTAAGGG
ACAtaaaaagtactgacgaaatttgggAATAAACCGTACGCAGCGGGACA
CAAAATCAAAACGAATGTCACATATAAataaacaatcaaaacaaatatgg
ctgattttgattgtttcgattgatttacaagttttttttggtAACCCGAT
TTTAATtattctctttaatgacacatAGTTCGcgtaatgtttacattttt
ctactTCTATGTTCCTTTAAATACTTAAAAGAATTATCACTTTTTCGTCA
GCTCAGAAACTCTTTTGCaatagttctatttatactgagacgattacctt
aagtggataaattttggcgggattaaaattggcgaattttggcaaaatta
aattcccgccaaattttacgaaattaaTTTATCCCTAAATTAAGTCCACG
CCAAAATTTTTCCATTTAAGGTAGTTTACctgagacgagcaatttagaaa
attagcattatggaggagtgtactttccatgcatgtttcaataaatagga
tctcctccacagatcacattttacaaactactcgtcCCAGacgatttttt
catttcagtatAGATGGAGCTAATGATCTTTATAGTTTGAATTAACTTCT
TTTTCTCCTTTGTAAAATTAAATTACGAGACAATGAACAAAGCCAATGGT
AATTTAACTATCGTATTTTCCACTTTCAGGCATCAAAAACTTCACCAAGT
ACACAACAGACCAGGTCCAGATTGATTACAATTTCTCATACAACGAATAC
TTCTCCTTCTTACAAAGCGGTGGCGTGAACGTCAAACAAAACACATCTTT
CGTTGTCACAACACCAGATTTCTCCAATATCCGTGATTCCATCAATATCA
CCAAATTACCAAGTGGTGACAAGCATTATTATTTCAGCTACGGAATAAAA
ACAGAACGCGAAGACACGATCAAAGATCACATGCTTTGCACCAGTGTTAT
TGGCGATCGAAGAAAATGTACAGTTTTCTTGAATCAATACAACATCCAAG
TTCCATATACCATCGTGTGGAATCATAAGGTTAAGAGTGCCTCGTGCAAA
TCTCATGGTGTCACTGACATTTTAATTGCACATATCGGTAAAATCAACGA
GCCTGCCACCAAGGATATGAACGATCGAATTGAACTCTAAGCTACGTGAT
AGGGATTgtacttttgtcttttttaatgtGTTTTAGAGTAacattaactt
ttttatttgaatgattgtaaaatgaaaacaaacaatattaTTATAGAATA
GTTTTTTGAGAACAGAAAACCACCCctgggtacttaggcaagtggAGGGC
acgggtatgtgccacccttaaggcTCCCTTTTTTGGACCTTCAAAGTCCC
ACTATGGGTCGCAAAAATCACAATTTCCAttttaagcccccccccctaag
gATCATAAAAGAAGTGAAATTATCA Run BLAST on NCBI transcript from alignment at sc0000728:149396..151970+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029192 ID=TCONS_00029192|Name=TCONS_00029192|organism=Clytia hemisphaerica|type=transcript|length=2575bp|location=Sequence derived from alignment at sc0000728:149396..151970+ (Clytia hemisphaerica)
tcagaTGGGTTTGATTCGCACTTCAACAGCTTTTTTTGCTTTGGTTGTAT
TGTTTGTCAACACGAAAGCTACATCACCAGATCCGTCATGCAACATCGAC
GCCGTACTTTACTCCACTCAAAATGACGACATTTACTTCTTTAAAGACAA
CATGTACGCCAGATGGAACGTCAAGTCTGACCGGATGTATTATTACGGGC
AAACGAAAGACCTGATCGACGGTTTAAAGACACCTATAGACGCAGCCATT
GAGACAAATCTTTATGGTactcaacaaattttttttttcagcggCAATCA
AGTTCAAATTTACGATCATTTTCACAAAAGCCCACTGAATACAATTGATT
TGAAAGACTTTGCTGTTGGTCTACCAGAATCAATCGATGCTACCTTCTTC
ATGCAGAGTACCTTTTACTTCTTTAAAGATTACCATATTTACTTCATGTT
TGTCGCAGAGAAAAAAGTGCATGGACCATTCAATATCACTAATTTTTTTC
CTAATCTCAAAGGTCCTGTAAATGCGGCTGTATTGAACACTTTCCATGAA
GGCCGTGATACTGCTTACTTATTTAGCGGTCAGAATTATTAtctttttgc
tgagtcagcggAAAAGGTCATTCCTATCGAAAAAAGATGGAAAGGACTTT
TAAATTCACCACTCTTTGCCAAATGTGAAATCGATTGCAATACTGTCACC
ATCTCAAACGATGATTGGAAATTTGGGTCAATTTCGTATAACATGTCAAT
GAATGACACCTATACTCGCTCTATTGGTAAGATACAATTGTGAGGTGTCT
TTTAAACCCTTACGTTTTGTCAAAAGCCTAAGAAATCTTCTTGTACTATA
TTGATAATCCCTAGTGTTCCATCATTGAGCTTTATATATACTCTGGAGAA
AATTCTTCAGCCCTGCCTGCCGAAATCTTTGTAGTACCATTACTCGATAG
CTATGCGTATAAATGAATAAACACTGATCTGCTTTTTCTTTGATAGAGCG
CCGTTTGACGCCAGTCAAAGCTTTACCACTAAAACGGGTTCTTTGTGAGt
gccactttaaaaaaaaactcccaTCAAAGATGAAGGATAAGACTTTATTT
AGAACCAGTGGTTTGTCTGCTGTCTGGGGACGATAATCCTTCTTTAAGGG
ACAtaaaaagtactgacgaaatttgggAATAAACCGTACGCAGCGGGACA
CAAAATCAAAACGAATGTCACATATAAataaacaatcaaaacaaatatgg
ctgattttgattgtttcgattgatttacaagttttttttggtAACCCGAT
TTTAATtattctctttaatgacacatAGTTCGcgtaatgtttacattttt
ctactTCTATGTTCCTTTAAATACTTAAAAGAATTATCACTTTTTCGTCA
GCTCAGAAACTCTTTTGCaatagttctatttatactgagacgattacctt
aagtggataaattttggcgggattaaaattggcgaattttggcaaaatta
aattcccgccaaattttacgaaattaaTTTATCCCTAAATTAAGTCCACG
CCAAAATTTTTCCATTTAAGGTAGTTTACctgagacgagcaatttagaaa
attagcattatggaggagtgtactttccatgcatgtttcaataaatagga
tctcctccacagatcacattttacaaactactcgtcCCAGacgatttttt
catttcagtatAGATGGAGCTAATGATCTTTATAGTTTGAATTAACTTCT
TTTTCTCCTTTGTAAAATTAAATTACGAGACAATGAACAAAGCCAATGGT
AATTTAACTATCGTATTTTCCACTTTCAGGCATCAAAAACTTCACCAAGT
ACACAACAGACCAGGTCCAGATTGATTACAATTTCTCATACAACGAATAC
TTCTCCTTCTTACAAAGCGGTGGCGTGAACGTCAAACAAAACACATCTTT
CGTTGTCACAACACCAGATTTCTCCAATATCCGTGATTCCATCAATATCA
CCAAATTACCAAGTGGTGACAAGCATTATTATTTCAGCTACGGAATAAAA
ACAGAACGCGAAGACACGATCAAAGATCACATGCTTTGCACCAGTGTTAT
TGGCGATCGAAGAAAATGTACAGTTTTCTTGAATCAATACAACATCCAAG
TTCCATATACCATCGTGTGGAATCATAAGGTTAAGAGTGCCTCGTGCAAA
TCTCATGGTGTCACTGACATTTTAATTGCACATATCGGTAAAATCAACGA
GCCTGCCACCAAGGATATGAACGATCGAATTGAACTCTAAGCTACGTGAT
AGGGATTgtacttttgtcttttttaatgtGTTTTAGAGTAacattaactt
ttttatttgaatgattgtaaaatgaaaacaaacaatattaTTATAGAATA
GTTTTTTGAGAACAGAAAACCACCCctgggtacttaggcaagtggAGGGC
acgggtatgtgccacccttaaggcTCCCTTTTTTGGACCTTCAAAGTCCC
ACTATGGGTCGCAAAAATCACAATTTCCAttttaagcccccccccctaag
gATCATAAAAGAAGTGAAATTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029192-exon-sc0000728-1491911889:149396..151970 | TCONS_00029192-exon-sc0000728-1491911889:149396..151970 | Clytia hemisphaerica | exon |
| TCONS_00029192-exon-sc0000728-1510915933:149396..151970 | TCONS_00029192-exon-sc0000728-1510915933:149396..151970 | Clytia hemisphaerica | exon |
| TCONS_00029192-exon-sc0000728-1575043694:149396..151970 | TCONS_00029192-exon-sc0000728-1575043694:149396..151970 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000728 | supercontig | sc0000728:149396..151970 + |
Blast
The following BLAST results are available for this feature:
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