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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029189 ID=TCONS_00029189|Name=TCONS_00029189|organism=Clytia hemisphaerica|type=transcript|length=2477bp
AAGATTTCTTATTATTAGATAACAAGGAATGGATGTAACACAAAATAGAG
CATTAAAGTAACACCAGTCAGACTTTGTACATCGTGGATGAgttttgaac
attaaaaaaaatgggTTTCTTCCAAAACGAGAGTTTAGTACAATTTTGTG
ATCTTCAGGGACATTTTGAAGACCTTCCAACGATTCATGGCATCGTTTTT
CTGGTCGTTGTGACGTTTTCATGCATAGCGATCATCAGTTGCAGTGGATA
TGTTTTGTACAAAGGTCTGTTAAAGTCGCCGACATTACGGAAGAAAAGAA
ACGCCTTCGTGTTGTCATTAGTTACATCGGACTTTTTATTTGGTGTTCTT
TTCACACCGACCCTCATTGCGGAACTATCTACGGGACTGTCCGGTGAAAA
AGCCACCCTTTGCAGTATCCGGTCATGGAGGGTCATACTTTTCACATATT
TCTTTTCCGCCAGACTTTTCAGCATTTTGTTTATCAGTCTTCGAACGTTC
ATTAAGACGTGTAAACAACAGACTCGAATGGAGGAGGTTTACGACAAATA
CATGCACTGGTTGTGTTGTATCGTCATCTGGTGCGTCGTTCCCATCATCC
TCTTCTCCATCGCTTTCGTTCATTTGAAGACATTCAAAATCGTTGGAACG
ATCACTTTCGTTTACTTCTTTGTCTCGATTATTTGCATCATCACTTTCTA
CGGCTTGTCTTTCCACTCGATTAAGCAAGCCTATCAAAGAGCAGATTCAG
ACTTGTATACTGAAGCGCTGGAGTTTTTAAGAGGGATCGTGGTGTGGTTT
TTGGTGACTACCATTCCATTGGCTGTGTGCGGCGTCGCCCTCATCACCAT
CACGTACACCAAAGACAACACGAAAGACCATGACGATGTCGAACAATACC
TATATCTAACCGCTCTCATTATCTGCACGCTCGACGCTCTCGCCAATCCC
ATTATTTACTTGAGAAAATTCAAAGAGTTTCAAGATAACTCAGCCATCAA
ATTCGCTGAGCTCCTCCATCAGGATGTCGTTGATGCGTTCAAAAAAGTCG
GTGATAAAACTGACGCTATTCTGACGTCATTCAAAACGATCAAAGCGAGC
ACGTTAAGAGAAATGGTCGCTCACTAATTGactttctttataaaaagaat
ctttttgtgAATGTGATTAATTTAACATTCATGTAGGCTGCTGATAAAAG
CACTTTTAATCTCTCTTTTATATCTCATGAGTATGAAAATGCCATATTTT
TTGATGGATCAGCCTTCCTTTATGTTTTGATATGCATGACGAACGAATTA
GTAGCAGTGTGAGTGAACGAAGAGAGAGAGAAGAGATGTTGCATTTCAAC
GTGTCTGTTTACTGCAACTTACAAGGACATTACAATGATTTGAGTACAGA
ATACAATTTGCTTTTTGGAATCTTATTCTTATTGACGGGAATATGTATCA
CAATTTGTAGTGGTTACGTCATCATTCGAGGAGTGGTAATGTCAGGCACT
TTACGtaaaaaacaaaacactttCGTGTTATCCCTGGTCATATCAGATTT
ATTGTTTGGAGTGACTTTCATTCCGGTCTTCGTGAGCGAGCTTTTCGAAC
GAGTTTTCCAATCAAAAGAAGATTTTTGTCGAATTCGATCGTGGCGAGTA
GTGTTCTTCTCGTATTTGTTTTCATCCCGATTACTGAGCATCCTTTTTCT
AAGCATGTTAACGTACATCAAAACCTGTCACTGTCGAACAAAGTTGGACT
CAATCTTCACATCTCTGGTGCGTTGGTTAGCGGTGATTGTGGTGTGGTTG
ATGCCGGCTATCGTTCTTATCATGATCCCTCTCACAAAAGCGGATAATTA
CAAAGTGGTTGGCACGATGACGTATGTGTATTACGCGCTTTCCATCTCCA
TCATCATTGGTTCTTACTTACTCACCTACTCAGCCATCAGCAAAGCCAAA
AAAAGAGGCGACTCTTCGTGTTATGAGGAAGCAGTGGATTTTGTGAAAGG
GATTCTTATTTGGTTTCTAATAACTACTCTCCTTATCGGAACATGCGGAT
TAATTTTGCTCGTTTTAGCGCACGATACACAATATCATGAAAATAACGTT
ATTGAGCATCACGTGTATATTGCCGCCATTTACTTTTGTACTCTGGACGC
CATCGCCAACCCTGTGGTGTATTTGAGAAAGTTTAAAGAGTTCCATTTGA
AACAGCAGACAACTGGATTAGAGGCTAAACACAATGTGAATACAGGCTAT
GTATCTCATTCTCCACAGTCTAGTCCGGTCAGGGATTATCCATCTATCCC
ACTGGACACCAAACAAATCTTGAACTGATGAAAAACTGGAAAAGATGAGA
AAGAATGTGAATTTGTAAAATAGTTGtaaatttgttcaaaatagcaaaag
aaatcAATTTGTTGCAAAATATGCTGTTCTAATTAGCCAATTATACTGTC
AATCAATTgcaattactttttcaaaac Run BLAST on NCBI protein sequence of TCONS_00029189-protein >TCONS_00029189-protein ID=TCONS_00029189-protein|Name=TCONS_00029189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MHDERISSSVSERREREEMLHFNVSVYCNLQGHYNDLSTEYNLLFGILFL
LTGICITICSGYVIIRGVVMSGTLRKKQNTFVLSLVISDLLFGVTFIPVF
VSELFERVFQSKEDFCRIRSWRVVFFSYLFSSRLLSILFLSMLTYIKTCH
CRTKLDSIFTSLVRWLAVIVVWLMPAIVLIMIPLTKADNYKVVGTMTYVY
YALSISIIIGSYLLTYSAISKAKKRGDSSCYEEAVDFVKGILIWFLITTL
LIGTCGLILLVLAHDTQYHENNVIEHHVYIAAIYFCTLDAIANPVVYLRK
FKEFHLKQQTTGLEAKHNVNTGYVSHSPQSSPVRDYPSIPLDTKQILN Run BLAST on NCBI transcript from alignment at sc0000727:90783..93259 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029189 ID=TCONS_00029189|Name=TCONS_00029189|organism=Clytia hemisphaerica|type=transcript|length=2477bp|location=Sequence derived from alignment at sc0000727:90783..93259 (Clytia hemisphaerica)
gttttgaaaaagtaattgcAATTGATTGACAGTATAATTGGCTAATTAGA
ACAGCATATTTTGCAACAAATTgatttcttttgctattttgaacaaattt
aCAACTATTTTACAAATTCACATTCTTTCTCATCTTTTCCAGTTTTTCAT
CAGTTCAAGATTTGTTTGGTGTCCAGTGGGATAGATGGATAATCCCTGAC
CGGACTAGACTGTGGAGAATGAGATACATAGCCTGTATTCACATTGTGTT
TAGCCTCTAATCCAGTTGTCTGCTGTTTCAAATGGAACTCTTTAAACTTT
CTCAAATACACCACAGGGTTGGCGATGGCGTCCAGAGTACAAAAGTAAAT
GGCGGCAATATACACGTGATGCTCAATAACGTTATTTTCATGATATTGTG
TATCGTGCGCTAAAACGAGCAAAATTAATCCGCATGTTCCGATAAGGAGA
GTAGTTATTAGAAACCAAATAAGAATCCCTTTCACAAAATCCACTGCTTC
CTCATAACACGAAGAGTCGCCTCTTTTTTTGGCTTTGCTGATGGCTGAGT
AGGTGAGTAAGTAAGAACCAATGATGATGGAGATGGAAAGCGCGTAATAC
ACATACGTCATCGTGCCAACCACTTTGTAATTATCCGCTTTTGTGAGAGG
GATCATGATAAGAACGATAGCCGGCATCAACCACACCACAATCACCGCTA
ACCAACGCACCAGAGATGTGAAGATTGAGTCCAACTTTGTTCGACAGTGA
CAGGTTTTGATGTACGTTAACATGCTTAGAAAAAGGATGCTCAGTAATCG
GGATGAAAACAAATACGAGAAGAACACTACTCGCCACGATCGAATTCGAC
AAAAATCTTCTTTTGATTGGAAAACTCGTTCGAAAAGCTCGCTCACGAAG
ACCGGAATGAAAGTCACTCCAAACAATAAATCTGATATGACCAGGGATAA
CACGaaagtgttttgttttttaCGTAAAGTGCCTGACATTACCACTCCTC
GAATGATGACGTAACCACTACAAATTGTGATACATATTCCCGTCAATAAG
AATAAGATTCCAAAAAGCAAATTGTATTCTGTACTCAAATCATTGTAATG
TCCTTGTAAGTTGCAGTAAACAGACACGTTGAAATGCAACATCTCTTCTC
TCTCTCTTCGTTCACTCACACTGCTACTAATTCGTTCGTCATGCATATCA
AAACATAAAGGAAGGCTGATCCATCAAAAAATATGGCATTTTCATACTCA
TGAGATATAAAAGAGAGATTAAAAGTGCTTTTATCAGCAGCCTACATGAA
TGTTAAATTAATCACATTcacaaaaagattctttttataaagaaagtCAA
TTAGTGAGCGACCATTTCTCTTAACGTGCTCGCTTTGATCGTTTTGAATG
ACGTCAGAATAGCGTCAGTTTTATCACCGACTTTTTTGAACGCATCAACG
ACATCCTGATGGAGGAGCTCAGCGAATTTGATGGCTGAGTTATCTTGAAA
CTCTTTGAATTTTCTCAAGTAAATAATGGGATTGGCGAGAGCGTCGAGCG
TGCAGATAATGAGAGCGGTTAGATATAGGTATTGTTCGACATCGTCATGG
TCTTTCGTGTTGTCTTTGGTGTACGTGATGGTGATGAGGGCGACGCCGCA
CACAGCCAATGGAATGGTAGTCACCAAAAACCACACCACGATCCCTCTTA
AAAACTCCAGCGCTTCAGTATACAAGTCTGAATCTGCTCTTTGATAGGCT
TGCTTAATCGAGTGGAAAGACAAGCCGTAGAAAGTGATGATGCAAATAAT
CGAGACAAAGAAGTAAACGAAAGTGATCGTTCCAACGATTTTGAATGTCT
TCAAATGAACGAAAGCGATGGAGAAGAGGATGATGGGAACGACGCACCAG
ATGACGATACAACACAACCAGTGCATGTATTTGTCGTAAACCTCCTCCAT
TCGAGTCTGTTGTTTACACGTCTTAATGAACGTTCGAAGACTGATAAACA
AAATGCTGAAAAGTCTGGCGGAAAAGAAATATGTGAAAAGTATGACCCTC
CATGACCGGATACTGCAAAGGGTGGCTTTTTCACCGGACAGTCCCGTAGA
TAGTTCCGCAATGAGGGTCGGTGTGAAAAGAACACCAAATAAAAAGTCCG
ATGTAACTAATGACAACACGAAGGCGTTTCTTTTCTTCCGTAATGTCGGC
GACTTTAACAGACCTTTGTACAAAACATATCCACTGCAACTGATGATCGC
TATGCATGAAAACGTCACAACGACCAGAAAAACGATGCCATGAATCGTTG
GAAGGTCTTCAAAATGTCCCTGAAGATCACAAAATTGTACTAAACTCTCG
TTTTGGAAGAAAcccattttttttaatgttcaaaacTCATCCACGATGTA
CAAAGTCTGACTGGTGTTACTTTAATGCTCTATTTTGTGTTACATCCATT
CCTTGTTATCTAATAATAAGAAATCTT Coding sequence (CDS) from alignment at sc0000727:90783..93259 >TCONS_00029189 ID=TCONS_00029189|Name=TCONS_00029189|organism=Clytia hemisphaerica|type=CDS|length=1047bp|location=Sequence derived from alignment at sc0000727:90783..93259 (Clytia hemisphaerica)
TCAGTTCAAGATTTGTTTGGTGTCCAGTGGGATAGATGGATAATCCCTGA
CCGGACTAGACTGTGGAGAATGAGATACATAGCCTGTATTCACATTGTGT
TTAGCCTCTAATCCAGTTGTCTGCTGTTTCAAATGGAACTCTTTAAACTT
TCTCAAATACACCACAGGGTTGGCGATGGCGTCCAGAGTACAAAAGTAAA
TGGCGGCAATATACACGTGATGCTCAATAACGTTATTTTCATGATATTGT
GTATCGTGCGCTAAAACGAGCAAAATTAATCCGCATGTTCCGATAAGGAG
AGTAGTTATTAGAAACCAAATAAGAATCCCTTTCACAAAATCCACTGCTT
CCTCATAACACGAAGAGTCGCCTCTTTTTTTGGCTTTGCTGATGGCTGAG
TAGGTGAGTAAGTAAGAACCAATGATGATGGAGATGGAAAGCGCGTAATA
CACATACGTCATCGTGCCAACCACTTTGTAATTATCCGCTTTTGTGAGAG
GGATCATGATAAGAACGATAGCCGGCATCAACCACACCACAATCACCGCT
AACCAACGCACCAGAGATGTGAAGATTGAGTCCAACTTTGTTCGACAGTG
ACAGGTTTTGATGTACGTTAACATGCTTAGAAAAAGGATGCTCAGTAATC
GGGATGAAAACAAATACGAGAAGAACACTACTCGCCACGATCGAATTCGA
CAAAAATCTTCTTTTGATTGGAAAACTCGTTCGAAAAGCTCGCTCACGAA
GACCGGAATGAAAGTCACTCCAAACAATAAATCTGATATGACCAGGGATA
ACACGaaagtgttttgttttttaCGTAAAGTGCCTGACATTACCACTCCT
CGAATGATGACGTAACCACTACAAATTGTGATACATATTCCCGTCAATAA
GAATAAGATTCCAAAAAGCAAATTGTATTCTGTACTCAAATCATTGTAAT
GTCCTTGTAAGTTGCAGTAAACAGACACGTTGAAATGCAACATCTCTTCT
CTCTCTCTTCGTTCACTCACACTGCTACTAATTCGTTCGTCATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029189-exon-sc0000727-1491911889:90783..93259 | TCONS_00029189-exon-sc0000727-1491911889:90783..93259 | Clytia hemisphaerica | exon |
| TCONS_00029189-exon-sc0000727-1510915933:90783..93259 | TCONS_00029189-exon-sc0000727-1510915933:90783..93259 | Clytia hemisphaerica | exon |
| TCONS_00029189-exon-sc0000727-1575043694:90783..93259 | TCONS_00029189-exon-sc0000727-1575043694:90783..93259 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000727 | supercontig | sc0000727:90783..93259 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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