TCONS_00029183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029183
Unique NameTCONS_00029183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029183 ID=TCONS_00029183|Name=TCONS_00029183|organism=Clytia hemisphaerica|type=transcript|length=828bp
NNTTCATGCATTAAAACGTGTGCATCTAGTTCTGTATCTTCTATGGAACG
AGacgattgattaattgattgagaACTTGTGTTTGGGTTAGACCACTCAT
CGGGTTGAGACATTTCGTCGTGTGAAGTTGGCGTCAAATAGACTCTTTGA
CCGGTTGAGTTGAGTTGTGAGTAGTCAATGCGCTTGATAGTGCGTCTTGA
CCGGTTGGTTGACATGTAAATCGTTGAAACGTTGGTAACTGTTCAATGCG
TTCTGTTTGAATGTGGCGTTACAAGAAATGACGCTGTTTGtaactttgtt
tgattgattttgttGATGTGATGTGTTCAAACTGTAGAAATAAATAACAA
AGGTCTATGAGTGttgtgtttataaaaaataagtctaagttcaaaaatga
aaatgtctgaattcaatgaaaaagtataagtctgattgaaaatgaaaaag
tataagtctgattgaaaaatgaaaataaaggtttGAATGAAATACTGAAC
CTATGAATCATGTCAAGGCAAGGCCCTAATCTATCAGTGTGAACtgaaag
aacaaaacaaaatggctgcctaaaagcaaaaacaagatggctgccaaaga
acaagaacaagaaaTGAAACCTACCAGGTAGCCAATATGAGAATGCTGTG
AATGAATTGACTATTGATTGACTTGAGTTGAAGTTGAacattgaattgaa
aattactTTAAGGTTAGAGCCTTATGATTTATGATGCCATTATGGTCAGT
CAGCATGACATGACACAAAATGGTAGCTCTGAGGTGTGACTGAAGTGAGG
CCTTAAATAGACTGAGTTCACACTGTGA
Run BLAST on NCBI

transcript from alignment at sc0000727:36973..37800

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029183 ID=TCONS_00029183|Name=TCONS_00029183|organism=Clytia hemisphaerica|type=transcript|length=828bp|location=Sequence derived from alignment at sc0000727:36973..37800 (Clytia hemisphaerica)
TCACAGTGTGAACTCAGTCTATTTAAGGCCTCACTTCAGTCACACCTCAG
AGCTACCATTTTGTGTCATGTCATGCTGACTGACCATAATGGCATCATAA
ATCATAAGGCTCTAACCTTAAagtaattttcaattcaatgtTCAACTTCA
ACTCAAGTCAATCAATAGTCAATTCATTCACAGCATTCTCATATTGGCTA
CCTGGTAGGTTTCAtttcttgttcttgttctttggcagccatcttgtttt
tgcttttaggcagccattttgttttgttctttcaGTTCACACTGATAGAT
TAGGGCCTTGCCTTGACATGATTCATAGGTTCAGTATTTCATTCaaacct
ttattttcatttttcaatcagacttatactttttcattttcaatcagact
tatactttttcattgaattcagacattttcatttttgaacttagacttat
tttttataaacacaaCACTCATAGACCTTTGTTATTTATTTCTACAGTTT
GAACACATCACATCaacaaaatcaatcaaacaaagttaCAAACAGCGTCA
TTTCTTGTAACGCCACATTCAAACAGAACGCATTGAACAGTTACCAACGT
TTCAACGATTTACATGTCAACCAACCGGTCAAGACGCACTATCAAGCGCA
TTGACTACTCACAACTCAACTCAACCGGTCAAAGAGTCTATTTGACGCCA
ACTTCACACGACGAAATGTCTCAACCCGATGAGTGGTCTAACCCAAACAC
AAGTtctcaatcaattaatcaatcgtCTCGTTCCATAGAAGATACAGAAC
TAGATGCACACGTTTTAATGCATGAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016604XLOC_016604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029183-exon-sc0000727-1491911889:36973..37800TCONS_00029183-exon-sc0000727-1491911889:36973..37800Clytia hemisphaericaexon
TCONS_00029183-exon-sc0000727-1510915933:36973..37800TCONS_00029183-exon-sc0000727-1510915933:36973..37800Clytia hemisphaericaexon
TCONS_00029183-exon-sc0000727-1575043694:36973..37800TCONS_00029183-exon-sc0000727-1575043694:36973..37800Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000727supercontigsc0000727:36973..37800 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.72428	3.72297	4.82443	5.10502	4.56023	2.654	2.72642	3.31127	1.4483	1.94495	0.812943	1.90324	1.29602	1.34593	1.21754	0.968398	1.24775	1.5876	1.87365	2.75169	1.92715	2.27364	1.36531	1.76009	0.615362	1.61829	1.91652	1.90898	5.43305	4.95977
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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