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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029179 ID=TCONS_00029179|Name=TCONS_00029179|organism=Clytia hemisphaerica|type=transcript|length=3695bp
GGAAAATTTAAGggttatttaaataaaaaatcacagttacttattttgtt
tgtaagatttttgattttgtgttttggttgacgacttttcaatttggccc
ttcagtgcggtataaacaaatgatttcattggtttaaaaaagtcaaaaca
ccAAGCTATATCACAAGATCAGAATCATGATCAGAGTGAATAGGAGCTAT
GGTCATACGTCATATGATATTTTCCGGCGTTttaaaaatttggcaaagtt
tAGTAAATTTGACAATATatcaatgttttatttttttagcagAATTTTTT
TAGCAGAAtgtagaatgataaaaaatgttttggctGGAATGGACACCATA
ACAGCAGTGCTATATACCTCTGagaaaacatactaaaatttcttttcaaa
agtccTACCAGAGACTTtgtcaaaacaattcaaaacaaaaaatctgctTG
CCTCCAGCTACAGAAAAAAATAGATtactctaatacaatggggaacctag
aataaactgaaaaattgttacagaactaaagagaaaaaaaatgaataaac
gattatcataatattaataataacaataataatgaaGCTGTCTTTTGATA
GCAAGAAAGTTGTTGTGGtgctttcaaagtttgtaaATATGAATGCGGGC
TTTCATGAGCTAAATCTTTGTACCATTTTCTACTTGCCTtcctcaaaaat
gaaaaagaagaatttaGCAGCATCATGATGATagaaaatcgccgtttttg
cagattttcattggactttttcctatatttcttagtttttgcACACAATA
TTATTATTGATTACATTTCCCATCGTCAAGCATGATTCAAAGGCAAAGCA
ATATTTGAGAAATAAGTGTTCTTGTCTTCTAGGAGATCCTGGGAGATCAC
TTATTTTGtttatgcccaaaacttagGTTGGTTTGATTTCAAAGTCATTT
TATATGGGGCTAACCTTGGAAAGCTAGCATGAAACAAGTTTCATCATGTT
TTCAAGCTTAATCTCTATACTATGCTGTTATCTTTCCTTTTTCGTTCaga
cattttcatcttctttttgcATGTTACCTATATCCGATAGGTCCATttag
catgttgcttgttatttcaaaaaaccttttacttTAATCTAAACCCTGTA
ATCCCTCATGGGGCTCTGTTCTAGTTTTAAGAACAGGAAAATTATTTGGC
ATTTTACATTAGAAAGGTTCAGCACAATGCAATGAATTGAGAAAACCTAT
TTTGCAGTAAGATTACTTTAGCCATTGTGGATATACATATTCAAAGGTGG
AAAAATCTGAATTCCTATATAAAGAAAGAACTACAATTCGATTCCAGAAT
GTTCTTCAATGAATGGGCAAAGTGAGAAAAAGGAAAATCTATTTTTGTAA
AACCATTTTATAATACCATTGTCTTTTCTAAAATATCCAGTgtaattgaa
aaattttacaacatttgatttttttagaattacagtggagtctccataac
ttaAAAACATGGAAACAGgaaatttgtttgaattatgCGAGACTGattta
taaggtattgttaactgaagggacaagaaaacttgtttgaatttaaggag
acatttgaatAATAGCAGAGGTGCCAACTCTAGTGTGAGACTCGTGCATT
TCCAAATTGTCTCGCACAATatgtgaaaaatttgatttttgatttttcac
acattttttatttttaagaaaaattccCCGGATTATCCGATTTCTAGAAA
AAAGTTTACTCCATATTCCGAATTTTTTCCACGGTTGAAATCACTCTGTA
tcaccatgaacatataaacgactgaacatctatcttttattgtctctttg
aagcgagctttgTTGCCGCCTGCATATCAAATTTGTTACAAAAAATCTGA
CAATATTCCatcacaattttttatttctttgaattacttaaCTAAAAGGC
TTGACAGAGATTGAATATTACTcgtaattcacaaaagaattatttattta
tcaacatttttcaacactGAAATGCAGATTTTCAACTgtgtgtatacttt
tgaatcacttttgtcactccaataattttttttatgactggaaaaaaaaa
gtatgccaaagttgagagcctgtgccataagaatatcataatttgaatcc
catactctctaaaattattccatacttatgaaccaaaatttagaaatatt
agtcagAGTTGTGACAAATTGACGAtaattttgcctctgttatctttgtt
atgatatagataagggcgtgagaaaagtagaacaacagagactttgtCGA
AGttttagcaaggtattcccaagagatatatcatcaaaatttattgtttc
gtTTTAAGTTTTTAACGAGGCCgtaacgaagctagcagtgtttTCTACAA
AACtgcaaaggagatggatgttcAGTCGTCCATATGTTCATGGTATCACA
ATGTCTCAAAGAAATGACATATGTTGggtcaaaacacaaaaatgattgtc
tcaaaattttatttaggGTATAAATAACAATAGCTCCTGCTAGTATTGAC
CAAAAACACACGAAAACGGCTGAAAGATGGCACTTATTTTATATGAGCCT
AACCCACTACCATTTCTGCAAGTCTttgaaagagaagaaaggacTTTCAC
CATGGGAGATGATCTCCCAGTAATAAAGATATCTCAAGATTGGAATAAGT
TTGGTGTGGCGGCAGTTGTTTGGGAAGCAGCACTTATTCTTGGAACGTAC
TTGATGACCATCAGAGAAGATATTAAAGGAAAAGAAATTCTCGAACTTGG
CTCTGGTACAGGTTTTTGTGGGATTGTCAGCAGTCTTTTAGGAGGGAATG
TTGTCATGACAGATCTTGCTGATTGTTTGGATGCTTGCCaccaaaataca
aaattgaatttgaatcaTTTGCATAATTTTGATGTAAAACCTTTGAATTG
GGAAGATGATCACAAAAGAGAGTGGGCCAATAAACATTTTGATTACATCA
TTGGCGCTGATCTTGTCTATATCgaagaaacttttcaaaacttggttaaa
actttcaaatattttcataatatcAACAAAACTGTAAAGATACTGCTGGC
TGGCAAAATTCGATACAAGGAACGCttccaaaagtttcaaaatattttgg
aaaaagacTTCAGTATTGAATTTCTTCAGCATGATGACTCTTCTAATATC
TATTTGGCCAAGATAAGCTAATATTGATTTATTATCactaattttcaaag
aaaaatcaatcatttaaattaattttattattttatagaaaATTTATTGA
AAGAAGATTGTTTTCTGTCACGCTTGCTTGGTTTTGCCTCCTTTGCCTTC
GTTTTTGTTAGTTCTAATCAGTTTTGAGGAGgttttttgtacaaattttc
ttttcgcTCTATGTTTTTCAGTGACtaataaaaaatagatttcaatgTAA
TGACAAAACATGTTACCTCCACCGTCAAAAGAAGGAATTTTAATTTTGGG
CGAGATCATTCGCCTCAAGATGCATCGAGATCCAACCATAGTGAAGGATA
GGAAGTATCGTTTGCGAAATTATCCTTGTTGTTTTGTCGGAAAGGAGGTG
GTGGAGTGGCTGCTGAAGAATCATGAAGCGCAAAGTGCGTCAAATGCTAT
CGCTTGTATGAAGGTCTTACAAAGCAATGGCATCTTCCATCATGG Run BLAST on NCBI transcript from alignment at sc0000727:108125..111819- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029179 ID=TCONS_00029179|Name=TCONS_00029179|organism=Clytia hemisphaerica|type=transcript|length=3695bp|location=Sequence derived from alignment at sc0000727:108125..111819- (Clytia hemisphaerica)
GGAAAATTTAAGGGTTATTTAAATAAAAAATCACAGTTACTTATTTTGTT
TGTAAGATTTTTGATTTTGTGTTTTGGTTGACGACTTTTCAATTTGGCCC
TTCAGTGCGGTATAAACAAATGATTTCATTGGTTTAAAAAAGTCAAAACA
CCAAGCTATATCACAAGATCAGAATCATGATCAGAGTGAATAGGAGCTAT
GGTCATACGTCATATGATATTTTCCGGCGTTTTAAAAATTTGGCAAAGTT
TAGTAAATTTGACAATATATCAATGTTTTATTTTTTTAGCAGAATTTTTT
TAGCAGAATGTAGAATGATAAAAAATGTTTTGGCTGGAATGGACACCATA
ACAGCAGTGCTATATACCTCTGAGAAAACATACTAAAATTTCTTTTCAAA
AGTCCTACCAGAGACTTTGTCAAAACAATTCAAAACAAAAAATCTGCTTG
CCTCCAGCTACAGAAAAAAATAGATTACTCTAATACAATGGGGAACCTAG
AATAAACTGAAAAATTGTTACAGAACTAAAGAGAAAAAAAATGAATAAAC
GATTATCATAATATTAATAATAACAATAATAATGAAGCTGTCTTTTGATA
GCAAGAAAGTTGTTGTGGTGCTTTCAAAGTTTGTAAATATGAATGCGGGC
TTTCATGAGCTAAATCTTTGTACCATTTTCTACTTGCCTTCCTCAAAAAT
GAAAAAGAAGAATTTAGCAGCATCATGATGATAGAAAATCGCCGTTTTTG
CAGATTTTCATTGGACTTTTTCCTATATTTCTTAGTTTTTGCACACAATA
TTATTATTGATTACATTTCCCATCGTCAAGCATGATTCAAAGGCAAAGCA
ATATTTGAGAAATAAGTGTTCTTGTCTTCTAGGAGATCCTGGGAGATCAC
TTATTTTGTTTATGCCCAAAACTTAGGTTGGTTTGATTTCAAAGTCATTT
TATATGGGGCTAACCTTGGAAAGCTAGCATGAAACAAGTTTCATCATGTT
TTCAAGCTTAATCTCTATACTATGCTGTTATCTTTCCTTTTTCGTTCAGA
CATTTTCATCTTCTTTTTGCATGTTACCTATATCCGATAGGTCCATTTAG
CATGTTGCTTGTTATTTCAAAAAACCTTTTACTTTAATCTAAACCCTGTA
ATCCCTCATGGGGCTCTGTTCTAGTTTTAAGAACAGGAAAATTATTTGGC
ATTTTACATTAGAAAGGTTCAGCACAATGCAATGAATTGAGAAAACCTAT
TTTGCAGTAAGATTACTTTAGCCATTGTGGATATACATATTCAAAGGTGG
AAAAATCTGAATTCCTATATAAAGAAAGAACTACAATTCGATTCCAGAAT
GTTCTTCAATGAATGGGCAAAGTGAGAAAAAGGAAAATCTATTTTTGTAA
AACCATTTTATAATACCATTGTCTTTTCTAAAATATCCAGTGTAATTGAA
AAATTTTACAACATTTGATTTTTTTAGAATTACAGTGGAGTCTCCATAAC
TTAAAAACATGGAAACAGGAAATTTGTTTGAATTATGCGAGACTGATTTA
TAAGGTATTGTTAACTGAAGGGACAAGAAAACTTGTTTGAATTTAAGGAG
ACATTTGAATAATAGCAGAGGTGCCAACTCTAGTGTGAGACTCGTGCATT
TCCAAATTGTCTCGCACAATATGTGAAAAATTTGATTTTTGATTTTTCAC
ACATTTTTTATTTTTAAGAAAAATTCCCCGGATTATCCGATTTCTAGAAA
AAAGTTTACTCCATATTCCGAATTTTTTCCACGGTTGAAATCACTCTGTA
TCACCATGAACATATAAACGACTGAACATCTATCTTTTATTGTCTCTTTG
AAGCGAGCTTTGTTGCCGCCTGCATATCAAATTTGTTACAAAAAATCTGA
CAATATTCCATCACAATTTTTTATTTCTTTGAATTACTTAACTAAAAGGC
TTGACAGAGATTGAATATTACTCGTAATTCACAAAAGAATTATTTATTTA
TCAACATTTTTCAACACTGAAATGCAGATTTTCAACTGTGTGTATACTTT
TGAATCACTTTTGTCACTCCAATAATTTTTTTTATGACTGGAAAAAAAAA
GTATGCCAAAGTTGAGAGCCTGTGCCATAAGAATATCATAATTTGAATCC
CATACTCTCTAAAATTATTCCATACTTATGAACCAAAATTTAGAAATATT
AGTCAGAGTTGTGACAAATTGACGATAATTTTGCCTCTGTTATCTTTGTT
ATGATATAGATAAGGGCGTGAGAAAAGTAGAACAACAGAGACTTTGTCGA
AGTTTTAGCAAGGTATTCCCAAGAGATATATCATCAAAATTTATTGTTTC
GTTTTAAGTTTTTAACGAGGCCGTAACGAAGCTAGCAGTGTTTTCTACAA
AACTGCAAAGGAGATGGATGTTCAGTCGTCCATATGTTCATGGTATCACA
ATGTCTCAAAGAAATGACATATGTTGGGTCAAAACACAAAAATGATTGTC
TCAAAATTTTATTTAGGGTATAAATAACAATAGCTCCTGCTAGTATTGAC
CAAAAACACACGAAAACGGCTGAAAGATGGCACTTATTTTATATGAGCCT
AACCCACTACCATTTCTGCAAGTCTTTGAAAGAGAAGAAAGGACTTTCAC
CATGGGAGATGATCTCCCAGTAATAAAGATATCTCAAGATTGGAATAAGT
TTGGTGTGGCGGCAGTTGTTTGGGAAGCAGCACTTATTCTTGGAACGTAC
TTGATGACCATCAGAGAAGATATTAAAGGAAAAGAAATTCTCGAACTTGG
CTCTGGTACAGGTTTTTGTGGGATTGTCAGCAGTCTTTTAGGAGGGAATG
TTGTCATGACAGATCTTGCTGATTGTTTGGATGCTTGCCACCAAAATACA
AAATTGAATTTGAATCATTTGCATAATTTTGATGTAAAACCTTTGAATTG
GGAAGATGATCACAAAAGAGAGTGGGCCAATAAACATTTTGATTACATCA
TTGGCGCTGATCTTGTCTATATCGAAGAAACTTTTCAAAACTTGGTTAAA
ACTTTCAAATATTTTCATAATATCAACAAAACTGTAAAGATACTGCTGGC
TGGCAAAATTCGATACAAGGAACGCTTCCAAAAGTTTCAAAATATTTTGG
AAAAAGACTTCAGTATTGAATTTCTTCAGCATGATGACTCTTCTAATATC
TATTTGGCCAAGATAAGCTAATATTGATTTATTATCACTAATTTTCAAAG
AAAAATCAATCATTTAAATTAATTTTATTATTTTATAGAAAATTTATTGA
AAGAAGATTGTTTTCTGTCACGCTTGCTTGGTTTTGCCTCCTTTGCCTTC
GTTTTTGTTAGTTCTAATCAGTTTTGAGGAGGTTTTTTGTACAAATTTTC
TTTTCGCTCTATGTTTTTCAGTGACTAATAAAAAATAGATTTCAATGTAA
TGACAAAACATGTTACCTCCACCGTCAAAAGAAGGAATTTTAATTTTGGG
CGAGATCATTCGCCTCAAGATGCATCGAGATCCAACCATAGTGAAGGATA
GGAAGTATCGTTTGCGAAATTATCCTTGTTGTTTTGTCGGAAAGGAGGTG
GTGGAGTGGCTGCTGAAGAATCATGAAGCGCAAAGTGCGTCAAATGCTAT
CGCTTGTATGAAGGTCTTACAAAGCAATGGCATCTTCCATCATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029179-exon-sc0000727-1575043694:108125..111819 | TCONS_00029179-exon-sc0000727-1575043694:108125..111819 | Clytia hemisphaerica | exon |
| TCONS_00029179-exon-sc0000727-1510915933:108125..111819 | TCONS_00029179-exon-sc0000727-1510915933:108125..111819 | Clytia hemisphaerica | exon |
| TCONS_00029179-exon-sc0000727-1491911889:108125..111819 | TCONS_00029179-exon-sc0000727-1491911889:108125..111819 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000727 | supercontig | sc0000727:108125..111819 - |
Blast
BLAST of TCONS_00029179 vs. Swiss-Prot (Human)
Match: MT21A (Protein N-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 3.887e-35 Identity = 82/212 (38.68%), Postives = 128/212 (60.38%), Query Frame = 3
Query: 2577 MALILYEPNPLPFLQVFEREERTFTMGDDLPVIKISQDWNKFGVAAVVWEAALILGTYLMTIREDIKGKEILELGSGTGFCGIVSSLLGGNVVMTDLADCLDACHQNTKLNL-NHLHNFD-VKPLNWEDDHKREWANKHFDYIIGADLVYIEETFQNLVKTFKYFHNINKTVKILLAGKIRYKERFQKFQNILEKDFSIEFLQHDDSSNIYL 3206
MAL+ YE LQ F + TF+ + I+I QDW GVAAVVW+AA++L TYL +++G+ +ELG+GTG GIV++LLG +V +TD L+ N + NL H+ VK L W + ++ FD I+GAD++Y+EETF +L++T ++ + N +V ILLA +IRY ER F +LE+ F++ + +D ++++
Sbjct: 1 MALVPYEETTEFGLQKFHKPLATFSFANH--TIQIRQDWRHLGVAAVVWDAAIVLSTYLEMGAVELRGRSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKSNVQANLPPHIQTKTVVKELTWGQNLG-SFSPGEFDLILGADIIYLEETFTDLLQTLEHLCS-NHSV-ILLACRIRY-ERDNNFLAMLERQFTVRKVHYDPEKDVHI 206
The following BLAST results are available for this feature:
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