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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029178 ID=TCONS_00029178|Name=TCONS_00029178|organism=Clytia hemisphaerica|type=transcript|length=2499bpRun BLAST on NCBI protein sequence of TCONS_00029178-protein >TCONS_00029178-protein ID=TCONS_00029178-protein|Name=TCONS_00029178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp MLPPPSKEGILILGEIIRLKMHRDPTIVKDRKYRLRNYPCCFVGKEVVEWRun BLAST on NCBI transcript from alignment at sc0000727:104002..120488- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029178 ID=TCONS_00029178|Name=TCONS_00029178|organism=Clytia hemisphaerica|type=transcript|length=16487bp|location=Sequence derived from alignment at sc0000727:104002..120488- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000727:104002..120488- >TCONS_00029178 ID=TCONS_00029178|Name=TCONS_00029178|organism=Clytia hemisphaerica|type=CDS|length=9144bp|location=Sequence derived from alignment at sc0000727:104002..120488- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00029178 vs. Swiss-Prot (Human)
Match: DPTOR (DEP domain-containing mTOR-interacting protein OS=Homo sapiens GN=DEPTOR PE=1 SV=2) HSP 1 Score: 183.726 bits (465), Expect = 1.678e-50 Identity = 113/360 (31.39%), Postives = 186/360 (51.67%), Query Frame = 1
Query: 184 RLKMHRDPTIVKDRKYRLRNYPCCFVGKEVVEWLLKNHEAQSASNAIACMKVLQSNGIFHHVCDDHL-FKNEYLFYRFRIDDGTFFVDDAQHERFHEAIMVHQRILGDSNNRLMKNVHLDSETTLENCFVAHQFISWMVSNNIACDRSNGVDIGKQFLDILLIKPVLVGECEFEDDETVYHFIFDIAAPIPLHKALNLNDEDG---------IIKGIDDYMKRVNLDAEANKKYLQM---LWRGGDDGFVEEEKDVKPDVNSNDVEQIPKLKPVILRDVTAKELMSKDSPYQWKNVRITSDKVGFGFVIRGDGPCYVQAIDPTGPAAVAGLKVRMYIYSVNGKIVLAMNHDEIANIILQG 1224
RL++H + ++KDR++ L+ YP CFV KE+++WL+++ EA AI M+ L GI HHVCD+H FK+ LFYRFR DDGTF +D+ + + F ++++++ N L + E F+A +F+ W+V A R + + ++ +I+ V + F D +Y F + L + LN + K D K + + + K +++ + R S+ + K V+ R VT++EL++ +PY K I D VG+GFV+RG PC++QA+DP+GPAA AG+KV ++ SVNG VL +++ ++N+IL G
Sbjct: 41 RLRLHEE-KVIKDRRHHLKTYPNCFVAKELIDWLIEHKEASDRETAIKLMQKLADRGIIHHVCDEHKEFKDVKLFYRFRKDDGTFPLDN-EVKAFMRGQRLYEKLMSPENTLLQPRE--EEGVKYERTFMASEFLDWLVQEGEATTRKEAEQLCHRLMEHGIIQHV-SNKHPFVDSNLLYQFRMNFRRRRRLMELLNEKSPSSQETHDSPFCLRKQSHDNRKSTSFMSVSPSKEIKIVSAVRRSSMSSCGSSGYFSSSPTLSSSPPVLCNPKSVLKRPVTSEELLTPGAPYARKTFTIVGDAVGWGFVVRGSKPCHIQAVDPSGPAAAAGMKVCQFVVSVNGLNVLHVDYRTVSNLILTG 395 The following BLAST results are available for this feature:
BLAST of TCONS_00029178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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