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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029162 ID=TCONS_00029162|Name=TCONS_00029162|organism=Clytia hemisphaerica|type=transcript|length=972bp
CTTTGAATTACAATGTTTACACTTTTTACTGTTTATAGCCACTAACCACA
CGATTTTGTACCAAGTTTTAGTGTACATTCCTTGAAACATCACCCGCCTT
CTTCGAAGCTCAGTAAGAATCGTTATTACAAGGGTTTTCATCATTTACTG
AAGTATAGGCGGGTGATGACctatcaaaaatttccaagtacgggagaaat
ttgtttttcttctagAATTACATAAATAACGACAATCGGAGTTAAGACAG
TTTACATATACCATAGCCTAGTGTCTATCTATGTTTTCGTTAGATAAAAT
GGAATTCACAGTTTAAATATACGCTTGAATATACGGACCATAGAGCCCGT
GAAATCCGTCTAAGGAAATGCGAAAGTCGTCCCTTAGTAGGCTTTCcagt
aaatttattttatcaagAAATTACTGCTATTGGATTGACCGTATTACTGT
TCCGAGCAAAGATTGTATTCCTACGAAGAAATCTTTTATACGCTCGTTTG
AATTCAAGATCTTTCCAAATGTAAATGCAAGGGTTCACACAagagttaaa
aagaaaaaagaaaatcccaACGACGTACAAGTACGGTTGATAAGGGCGTg
taaaatgatcaaaaaacAACACAACGATTGCATAAACAACTACTGGGAGG
GCAGCACCAAAATACGCGATCATAAGTAATAAGATTTTCTTAGAGAGTCG
GATATGGGTCCGTAGATGTTTTTGGTCGTTCCTACTAAGCGATAGGGTGT
TTGTTTGCCGTTGCTTGACGGCTTTCCAGATCTGATAATATCCAGTGATT
AAGATAGTAGATGCGATGACAGAACCAATGTTAataaaatacattaaaaa
tgttttgttgaatGCATTTAAAAATGCCGTTACTGAGTTACCAAACCAAA
TCGTCACAAGAATTAGATTGATTTTAAGATCAGTGATAATGTCATGGTAT
TTGAACGGTTTTGTGATGCTTG Run BLAST on NCBI protein sequence of TCONS_00029162-protein >TCONS_00029162-protein ID=TCONS_00029162-protein|Name=TCONS_00029162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
SITKPFKYHDIITDLKINLILVTIWFGNSVTAFLNAFNKTFLMYFINIGS
VIASTILITGYYQIWKAVKQRQTNTLSLSRNDQKHLRTHIRLSKKILLLM
IAYFGAALPVVVYAIVVLFFDHFTRPYQPYLYVVGIFFFLFNSCVNPCIY
IWKDLEFKRAYKRFLRRNTIFARNSNTVNPIAVIS Run BLAST on NCBI transcript from alignment at sc0000726:92176..93147 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029162 ID=TCONS_00029162|Name=TCONS_00029162|organism=Clytia hemisphaerica|type=transcript|length=972bp|location=Sequence derived from alignment at sc0000726:92176..93147 (Clytia hemisphaerica)
CAAGCATCACAAAACCGTTCAAATACCATGACATTATCACTGATCTTAAA
ATCAATCTAATTCTTGTGACGATTTGGTTTGGTAACTCAGTAACGGCATT
TTTAAATGCattcaacaaaacatttttaatgtattttatTAACATTGGTT
CTGTCATCGCATCTACTATCTTAATCACTGGATATTATCAGATCTGGAAA
GCCGTCAAGCAACGGCAAACAAACACCCTATCGCTTAGTAGGAACGACCA
AAAACATCTACGGACCCATATCCGACTCTCTAAGAAAATCTTATTACTTA
TGATCGCGTATTTTGGTGCTGCCCTCCCAGTAGTTGTTTATGCAATCGTT
GTGTTgttttttgatcattttacACGCCCTTATCAACCGTACTTGTACGT
CGTtgggattttcttttttctttttaactctTGTGTGAACCCTTGCATTT
ACATTTGGAAAGATCTTGAATTCAAACGAGCGTATAAAAGATTTCTTCGT
AGGAATACAATCTTTGCTCGGAACAGTAATACGGTCAATCCAATAGCAGT
AATTTcttgataaaataaatttactgGAAAGCCTACTAAGGGACGACTTT
CGCATTTCCTTAGACGGATTTCACGGGCTCTATGGTCCGTATATTCAAGC
GTATATTTAAACTGTGAATTCCATTTTATCTAACGAAAACATAGATAGAC
ACTAGGCTATGGTATATGTAAACTGTCTTAACTCCGATTGTCGTTATTTA
TGTAATTctagaagaaaaacaaatttctcccgtacttggaaatttttgat
agGTCATCACCCGCCTATACTTCAGTAAATGATGAAAACCCTTGTAATAA
CGATTCTTACTGAGCTTCGAAGAAGGCGGGTGATGTTTCAAGGAATGTAC
ACTAAAACTTGGTACAAAATCGTGTGGTTAGTGGCTATAAACAGTAAAAA
GTGTAAACATTGTAATTCAAAG Coding sequence (CDS) from alignment at sc0000726:92176..93147 >TCONS_00029162 ID=TCONS_00029162|Name=TCONS_00029162|organism=Clytia hemisphaerica|type=CDS|length=558bp|location=Sequence derived from alignment at sc0000726:92176..93147 (Clytia hemisphaerica)
AGCATCACAAAACCGTTCAAATACCATGACATTATCACTGATCTTAAAAT
CAATCTAATTCTTGTGACGATTTGGTTTGGTAACTCAGTAACGGCATTTT
TAAATGCattcaacaaaacatttttaatgtattttatTAACATTGGTTCT
GTCATCGCATCTACTATCTTAATCACTGGATATTATCAGATCTGGAAAGC
CGTCAAGCAACGGCAAACAAACACCCTATCGCTTAGTAGGAACGACCAAA
AACATCTACGGACCCATATCCGACTCTCTAAGAAAATCTTATTACTTATG
ATCGCGTATTTTGGTGCTGCCCTCCCAGTAGTTGTTTATGCAATCGTTGT
GTTgttttttgatcattttacACGCCCTTATCAACCGTACTTGTACGTCG
TtgggattttcttttttctttttaactctTGTGTGAACCCTTGCATTTAC
ATTTGGAAAGATCTTGAATTCAAACGAGCGTATAAAAGATTTCTTCGTAG
GAATACAATCTTTGCTCGGAACAGTAATACGGTCAATCCAATAGCAGTAA
TTTcttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029162-exon-sc0000726-1491911889:92176..93147 | TCONS_00029162-exon-sc0000726-1491911889:92176..93147 | Clytia hemisphaerica | exon |
| TCONS_00029162-exon-sc0000726-1510915933:92176..93147 | TCONS_00029162-exon-sc0000726-1510915933:92176..93147 | Clytia hemisphaerica | exon |
| TCONS_00029162-exon-sc0000726-1575043694:92176..93147 | TCONS_00029162-exon-sc0000726-1575043694:92176..93147 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000726 | supercontig | sc0000726:92176..93147 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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