TCONS_00029157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029157
Unique NameTCONS_00029157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029157 ID=TCONS_00029157|Name=TCONS_00029157|organism=Clytia hemisphaerica|type=transcript|length=684bp
aaaaaactcgaGTAAGACAAGTAAATTACTGCCTAACCCGAGTAACTCGA
GTTCTTGGAGACCAAATTCGTACCCAGTTCACTTTATCTCACCCGTGTCA
CACTTGTCGCATCTGGAAGGCGGCCTGAAACCGAATTCTTAATTACCCGA
AAAACGCGTACTTTTCGCAGTTTTCGAGGTTGtggcattttgaaaaatta
aaaattacaaaatctagtaCTTCATTTAACATCACACACCGTGGAGAATG
GACGTAATACAATTTAATGAAGAATTCTACTGTTCGAAATGTTTTgctaa
atttagcaaaaaatttaATGCTCAACGGCACTACAGGAATGCTCACGGTA
TAACGCAGCACCAGCAGCCACCATTATTAACTGCAGAAGTATCCTCTCAC
AATGAGCTTGATGATGATAGATTGAATGACTCCGACACAGAAATGTGCGA
AGATCATTATTCCCTTGGAGCAGACGGACAAGCAAACGAAGCTCCTATCG
AGCATGGCATTGATCAACTAATAGCAGCTACTATGCGGACGCTTCAGTTC
AGAGAAGACGATGAGGCAGATTCTTCAAGTGATCAGAGTGACGACGAGGT
AGACGAGCTTTCGATTGATGACGATTGGGTATTTGATGGATCGAAAATAT
CAATAAAAGAGCATGCTTCCTCTGTGTTAGGTAT
Run BLAST on NCBI

protein sequence of TCONS_00029157-protein

>TCONS_00029157-protein ID=TCONS_00029157-protein|Name=TCONS_00029157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MDVIQFNEEFYCSKCFAKFSKKFNAQRHYRNAHGITQHQQPPLLTAEVSS
HNELDDDRLNDSDTEMCEDHYSLGADGQANEAPIEHGIDQLIAATMRTLQ
FREDDEADSSSDQSDDEVDELSIDDDWVFDGSKISIKEHASSVLG
Run BLAST on NCBI

transcript from alignment at sc0000726:18232..18915

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029157 ID=TCONS_00029157|Name=TCONS_00029157|organism=Clytia hemisphaerica|type=transcript|length=684bp|location=Sequence derived from alignment at sc0000726:18232..18915 (Clytia hemisphaerica)
ATACCTAACACAGAGGAAGCATGCTCTTTTATTGATATTTTCGATCCATC
AAATACCCAATCGTCATCAATCGAAAGCTCGTCTACCTCGTCGTCACTCT
GATCACTTGAAGAATCTGCCTCATCGTCTTCTCTGAACTGAAGCGTCCGC
ATAGTAGCTGCTATTAGTTGATCAATGCCATGCTCGATAGGAGCTTCGTT
TGCTTGTCCGTCTGCTCCAAGGGAATAATGATCTTCGCACATTTCTGTGT
CGGAGTCATTCAATCTATCATCATCAAGCTCATTGTGAGAGGATACTTCT
GCAGTTAATAATGGTGGCTGCTGGTGCTGCGTTATACCGTGAGCATTCCT
GTAGTGCCGTTGAGCATtaaattttttgctaaatttagcAAAACATTTCG
AACAGTAGAATTCTTCATTAAATTGTATTACGTCCATTCTCCACGGTGTG
TGATGTTAAATGAAGtactagattttgtaatttttaatttttcaaaatgc
caCAACCTCGAAAACTGCGAAAAGTACGCGTTTTTCGGGTAATTAAGAAT
TCGGTTTCAGGCCGCCTTCCAGATGCGACAAGTGTGACACGGGTGAGATA
AAGTGAACTGGGTACGAATTTGGTCTCCAAGAACTCGAGTTACTCGGGTT
AGGCAGTAATTTACTTGTCTTACtcgagtttttt

Coding sequence (CDS) from alignment at sc0000726:18232..18915

>TCONS_00029157 ID=TCONS_00029157|Name=TCONS_00029157|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0000726:18232..18915 (Clytia hemisphaerica)
ACCTAACACAGAGGAAGCATGCTCTTTTATTGATATTTTCGATCCATCAA
ATACCCAATCGTCATCAATCGAAAGCTCGTCTACCTCGTCGTCACTCTGA
TCACTTGAAGAATCTGCCTCATCGTCTTCTCTGAACTGAAGCGTCCGCAT
AGTAGCTGCTATTAGTTGATCAATGCCATGCTCGATAGGAGCTTCGTTTG
CTTGTCCGTCTGCTCCAAGGGAATAATGATCTTCGCACATTTCTGTGTCG
GAGTCATTCAATCTATCATCATCAAGCTCATTGTGAGAGGATACTTCTGC
AGTTAATAATGGTGGCTGCTGGTGCTGCGTTATACCGTGAGCATTCCTGT
AGTGCCGTTGAGCATtaaattttttgctaaatttagcAAAACATTTCGAA
CAGTAGAATTCTTCATTAAATTGTATTACGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016587XLOC_016587Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029157-proteinTCONS_00029157-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029157-exon-sc0000726-1491911889:18232..18915TCONS_00029157-exon-sc0000726-1491911889:18232..18915Clytia hemisphaericaexon
TCONS_00029157-exon-sc0000726-1510915933:18232..18915TCONS_00029157-exon-sc0000726-1510915933:18232..18915Clytia hemisphaericaexon
TCONS_00029157-exon-sc0000726-1575043694:18232..18915TCONS_00029157-exon-sc0000726-1575043694:18232..18915Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000726supercontigsc0000726:18232..18915 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0898982	0.0629398	0.0779611	0.075671	0	0.049674	0.0515869	0.0424114	0.0910279	0	0.0574694	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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