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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029131 ID=TCONS_00029131|Name=TCONS_00029131|organism=Clytia hemisphaerica|type=transcript|length=1369bp
atttttttagtGGAGGATTCGATGGGTCTCAGTGAGGTAGTTGGGGTTTC
TGTTTTGGTCAATgagatgaaagagacaatcgtCTGGCTTATCGATACAT
TTAAAAAGCTGAACCCCAGTTAAGTCAGAGTTGTAATGGCAGATAAAGAT
TTTAATGAACGTGACACCATTTCAAAATTATGGTGTTGTCCAGTGCTAAT
TTGCCAATTTCATTCTTTTAAAAGGGGCATAGCTGACCTAAAAATATCCA
AAACCGATTCAGACACAGCCAAAGAACTGTTTGAAAAGATGTGTTATTCT
TTTTCCATGGATGTTTACAATGACACGTACAAAGATTTGAAAGCTTTGGG
AAACACGCAAATTTggaattatttctacaaaaattggcacccaattCGTC
AGGACTGGGTCAGATGTTTTAAAGCACTTCATGGTAACTTTCTAAACTCA
ACAAATAACAGGAAAGctttaattcaaaattaaaatctgtTATTAAAAAG
TATAGTTCCTTTGAAGATTTTGTCAAAGGTTTTTTCATTGTCCTTTATAC
ATTGAGAGGCGAGAGAGATGGTATAGTTGCCAAAGTCAGCAACAAAAAAA
GGGTATTTACCAACTCTACACCCTCTGAGACTGAAATTTTGATATCGTCC
TACTTGACAAGCTATTCTGCAGACTTTGTTATCAAGGAATTCAAAGCTTC
AGAGAATTACAAATTGAAAGAATCCAATGAGAATCTTGATCACGCGTGTA
CTTGCTATTTTAACAAATCAATAAGACTGCCCTGTAAGCATATTTTGCTT
ATAGGGCAGAAAATGATCTAAAACTTTTTGACCCTGATACTTGTGATCCT
AGATGGTCTCAAGAGTATTATTACCAGCATCAGAGATTATATACTCATCA
ACAAGATAAAAACGAATCAACGATGAATCAACCAATCAGTGTTTCTGTGT
CCACGCCAAGAGACTTGAAAAAGATGAACCACAATGAAAAGTTCCGTGAG
GCTAATGACGTTTGCTAATCTGNATCAACGATGAATCAACCAATCAGTGT
TTCTGTATCCACGCCAAGAGACTTGAAAAAGATGAACCACAATGAAAAGT
TCCGAGAGGCTAATGACGTTTGCACAAAGCTTGCTAATCTTGCATGTGAA
GTTGGCAGTGATTCCTTTGAAAGAAGACTCCATCTGCTCAAAGACTTACA
AAGaatttgggaaaataatgaCGAAACAAGCCTTCTTTTCTGGTCGGAAC
CACAGCATGTAAACAATAGCAATGGAGAAAATGCTACtaactagggcaag
atgggttacggggatgctccgctggtcagggtacctttcttaacctccac
gagtcccaggtagggtcgc Run BLAST on NCBI transcript from alignment at sc0000726:3263..4774+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029131 ID=TCONS_00029131|Name=TCONS_00029131|organism=Clytia hemisphaerica|type=transcript|length=1512bp|location=Sequence derived from alignment at sc0000726:3263..4774+ (Clytia hemisphaerica)
atttttttagtGGAGGATTCGATGGGTCTCAGTGAGGTAGTTGGGGTTTC
TGTTTTGGTCAATgagatgaaagagacaatcgtCTGGCTTATCGATACAT
TTAAAAAGCTGAACCCCAGTTAAGTCAGAGTTGTAATGGCAGATAAAGAT
TTTAATGAACGTGACACCATTTCAAAATTATGGTGTTGTCCAGTGCTAAT
TTGCCAATTTCATTCTTTTAAAAGGGGCATAGCTGACCTAAAAATATCCA
AAACCGATTCAGACACAGCCAAAGAACTGTTTGAAAAGATGTGTTATTCT
TTTTCCATGGATGTTTACAATGACACGTACAAAGATTTGAAAGCTTTGGG
AAACACGCAAATTTggaattatttctacaaaaattggcacccaattCGTC
AGGACTGGGTCAGATGTTTTAAAGCACTTCATGGTAACTTTCTAAACTCA
ACAAATAACAGGAAAGctttaattcaaaattaaaatctgtTATTAAAAAG
TATAGTTCCTTTGAAGATTTTGTCAAAGGTTTTTTCATTGTCCTTTATAC
ATTGAGAGGCGAGAGAGATGGTATAGTTGCCAAAGTCAGCAACAAAAAAA
GGGTATTTACCAACTCTACACCCTCTGAGACTGAAATTTTGATATCGTCC
TACTTGACAAGCTATTCTGCAGACTTTGTTATCAAGGAATTCAAAGCTTC
AGAGAATTACAAATTGAAAGAATCCAATGAGAATCTTGATCACGCGTGTA
CTTGCTATTTTAACAAATCAATAAGACTGCCCTGTAAGCATATTTTGCTT
ATAGGGCAGAAAATGATCTAAAACTTTTTGACCCTGATACTTGTGATCCT
AGATGGTCTCAAGAGTATTATTACCAGCATCAGAGATTATATACTCATCA
ACAAGATAAAAACGAATCAACGATGAATCAACCAATCAGTGTTTCTGTGT
CCACGCCAAGAGACTTGAAAAAGATGAACCACAATGAAAAGTTCCGTGAG
GCTAATGACGTTTGCTAATCTGNATCAACGATGAATCAACCAATCAGTGT
TTCTGTATCCACGCCAAGAGACTTGAAAAAGATGAACCACAATGAAAAGT
TCCGAGAGGCTAATGACGTTTGCACAAAGCTTGCTAATCTTGCATGTGAA
GTTGGCAGTGATTCCTTTGAAAGAAGACTCCATCTGCTCAAAGACTTACA
AAGaatttgggaaaataatgaCGAAACAAGCCTTCTTTTCTGGTCGGGTA
TGTATGTGCCTGtacaattttcttttcattttcttaatcCTAGGATTGGC
TCAAATTGTGTTTGTATaatattttcatgaattactTAATCATTTCGCAG
ACGGTTCCAACATTCACTCAACGATATTGTGTCATTATAGAACCACAGCA
TGTAAACAATAGCAATGGAGAAAATGCTACtaactagggcaagatgggtt
acggggatgctccgctggtcagggtacctttcttaacctccacgagtccc
aggtagggtcgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029131-exon-sc0000726-1491911889:3263..4509 | TCONS_00029131-exon-sc0000726-1491911889:3263..4509 | Clytia hemisphaerica | exon |
| TCONS_00029131-exon-sc0000726-1510915933:3263..4509 | TCONS_00029131-exon-sc0000726-1510915933:3263..4509 | Clytia hemisphaerica | exon |
| TCONS_00029131-exon-sc0000726-1575043694:3263..4509 | TCONS_00029131-exon-sc0000726-1575043694:3263..4509 | Clytia hemisphaerica | exon |
| TCONS_00029131-exon-sc0000726-1491911889:4653..4774 | TCONS_00029131-exon-sc0000726-1491911889:4653..4774 | Clytia hemisphaerica | exon |
| TCONS_00029131-exon-sc0000726-1510915933:4653..4774 | TCONS_00029131-exon-sc0000726-1510915933:4653..4774 | Clytia hemisphaerica | exon |
| TCONS_00029131-exon-sc0000726-1575043694:4653..4774 | TCONS_00029131-exon-sc0000726-1575043694:4653..4774 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000726 | supercontig | sc0000726:3263..4774 + |
Blast
The following BLAST results are available for this feature:
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