|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029129 ID=TCONS_00029129|Name=TCONS_00029129|organism=Clytia hemisphaerica|type=transcript|length=854bp
tttaagcCTCAAcatttgaaattgttcttattaaaaaaaacagtgaAGCA
ATTTTATATCTTCTATTTACTTTAGATTTTTAATTATTATTCTTTTTTGT
CTAGTTTTGATCAGATCAAATGTTCCCTTCAAGTAAAATTTTCATCTACT
ATTATCATTATGGAAGaaccagaaccatcaaatttTTATGTTGGTGAGAC
TTTTACCAGCTTGGAAGATTTAGaatccaaaatcaaaatctttcagcaag
aaaattttgttcAACTTTGGAAACCCGATTGTCGTCTTTTGGCATCTGCA
ATTAAGGGTAATCGACTGAGTAAAGCAAAGAAATGTGCTAACAAAAAATT
GGTTTATTCTGAAGTGAAATACTCATGTGTTCATGGTGGGCAAAAATTTA
CTTCACGTGGAACTGGTAAAAGAGCTTCCTAtACTTTGAAGTCAGACTGC
CCATTCTTCGTTAGACTAAGGTTATCCAAGAATGTCCATCATTTGGAAGT
CAAAGAAATTCTTAATGAACATAACCATGATCTCAATGAGaattTATTCA
GGCATCTTCCCCAACAGAGGAGACTgtcaaatgatgaaaaaaaaaaggca
ACACACATGATGGATCTCCAGGTCAACAAAAAAATGCTGAAGAACCAAAT
TCAAGCGGAGACTGGTAAGGTGGTTCTTCTGAAAGATTTGAGTAACCTGG
CGCAAAAGAGTCAGAACAAAGATACATTTGATGATGTCATAAATATGCTA
AGAAACCAATATGGTTGCACTGTGGAAATGAACGTGAGTGAAAATGGAGA
TTTTATCGGGCTCTTCTTTCAGGACGAGGTAATGAAGAaagattttgctt
catt Run BLAST on NCBI protein sequence of TCONS_00029129-protein >TCONS_00029129-protein ID=TCONS_00029129-protein|Name=TCONS_00029129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MEEPEPSNFYVGETFTSLEDLESKIKIFQQENFVQLWKPDCRLLASAIKG
NRLSKAKKCANKKLVYSEVKYSCVHGGQKFTSRGTGKRASYTLKSDCPFF
VRLRLSKNVHHLEVKEILNEHNHDLNENLFRHLPQQRRLSNDEKKKATHM
MDLQVNKKMLKNQIQAETGKVVLLKDLSNLAQKSQNKDTFDDVINMLRNQ
YGCTVEMNVSENGDFIGLFFQDEVMKKDFAS Run BLAST on NCBI transcript from alignment at sc0000726:654..3201+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029129 ID=TCONS_00029129|Name=TCONS_00029129|organism=Clytia hemisphaerica|type=transcript|length=2548bp|location=Sequence derived from alignment at sc0000726:654..3201+ (Clytia hemisphaerica)
tttaagcCTCAAcatttgaaattgttcttattaaaaaaaacagtgaAGCA
ATTTTATATCTTCTATTTACTTTAGATTTTTAATTATTATTCTTTTTTGT
CTAGTTTTGATCAGATCAAATGTTCCCTTCAAGTAAAATTTTCATCTACT
ATTATCATTATGGAAGaaccagaaccatcaaatttTTATGTTGGTGAGAC
TTTTACCAGCTTGGAAGATTTAGaatccaaaatcaaaatctttcagcaag
aaaattttgttcAACTTTGGAAACCCGATTGTCGTCTTTTGGCATCTGCA
ATTAAGGGTAATCGACTGAGTAAAGCAAAGAAATGTGCTAACAAAAAATT
GGTTTATTCTGAAGTGAAATACTCATGTGTTCATGGTGGGCAAAAATTTA
CTTCACGTGGAACTGGTAAAAGAGCTTCCTAGTAAGTTTGATTATTATCT
TTCGCTACTGTAATCAATTTTCAGCCTTCTAGGATTATTCACACTCAACC
TAtaattaagcaaaaaaaaacccaGCAATATGGAGCTTGGATTTCGTCAT
CCCCCGGGGGagaggggtactagggcaaaaaaAGGTACAGGGaggctccg
ctggtcagggtacctttttcacctccaccagtcccacgtagggtcgcaaa
aacaccaaaatagaaaaatcagtcccttgTAGGGTAgctattttggaaat
tttgggacgaaatctggaaattttgagaaaatctNaaaatagaaaaatca
gtcccttgTAGGGTAgctattttggaaattttgggacgaaatctggaaat
tttgagaaaatctggaaattttgagaaaatttgggaattttagtcccatt
cagggtcactttttttgcaaaaaatgagTCCCATGTAGGGTCCgcttttc
gaacctcagcggaccACCCctgtcggtcggcaagggtagtacccccctcc
CGGGCGTCATGCTAAATGATATCCTTTCAATGGAATCAGTCTAATTTCAT
TTGCTTGGTTTCCAtgttaataacaaaaaaacagtGTGACAACTTgattt
tggttttgattttttctagtACTTTGAAGTCAGACTGCCCATTCTTCGTT
AGACTAAGGTTATCCAAGAATGTCCATCATTTGGAAGTCAAAGAAATTCT
TAATGAACATAACCATGATCTCAATGAGGTAATCACTCAGTTATTTATCA
ATGATTTGTATAACCGGACTTGTTAAACAATTTCAATTAGTTTTTGTTTA
TAAgttgcaaattttggaattagaATTTTTCCTTAATAGGTCAGCAATCT
TTGCAAAAAATAGAATCCATGTATAAAACTTACTTGCCAGTACCCGGCAT
CGCACATTGGTTGCTGAATGCAATTAAAGTTCTTTGGATGCTAAATTTTG
TCCCCCGAGAGTTATCTTCCCCCTTCAAAGCATTTAATAATTATCTTAAA
CCTTTTTGCGTTATGTGGTGCAATACCAAAAAGAAGGTAACTTTATTAAC
AGAAATATTGTTGGTATTTGTAACAAAAACATTCAATACAATGTAATTGT
TTTCACAAGCTGAAAGAACTTTCattatctttgttaaaaaaaattcaatc
caTCAGAATCCATCCAAGCACCAGAGTAGGTTTCAGTGTATACCATGAAA
GTGTTGCAAATCTGATGTCCAATTCTTCAACAATGATTTGATTTAATGTA
ACGCAACTaccacttcttttttttttctcaaagaattTATTCAGGCATCT
TCCCCAACAGAGGAGACTgtcaaatgatgaaaaaaaaggcAATNTTTGAT
TTAATGTAACGCAACCAccacttatttttttttctcaaagaattTATTCA
GGCATCTTCCCCAACAGAGGAGACTgtcaaatgatgaaaaaaaaaaggca
ACACACATGATGGATCTCCAGGTCAACAAAAAAATGCTGAAGAACCAAAT
TCAAGCGGAGACTGGTAAGGTGGTTCTTCTGAAAGATTTGAGTAACCTGG
CGCAAAAGAGTCAGAACAAAGATACATTTGATGATGTCATAAATATGCTA
AGAAACCAATATGGTATGTATTTCATTAGCTTTTCAATGAGTACAGAAAT
TTCCTGTATTGTATGTTTGAAATAAGCGTATATCTAGAATTTAAGAAGTA
AGCTTGATTGCTGGCACTAAGTATTCCTTTAGTTGTTTCTGCATAAACCA
TATTGTCAGTATAAAGTGTCTCAAATTAGTGAGTATTTTAGTATataaaa
atcacaactttttttGCATGCCAAGATTCGCTTTCCAATATCATTCTTTG
CACTTATGGAAATATGAGTCATCAGGATTTTCACATAAAGCAGAATATTG
ACCACTTTATTCAAGACACACCGTATATCAAAGTCAGATATTAAACTTGA
TTTGTTAAGGGAATGATGTGTAGCTTATTGTGACGATGACAACCTTCCTT
CTTTTAGGTTGCACTGTGGAAATGAACGTGAGTGAAAATGGAGATTTTAT
CGGGCTCTTCTTTCAGGACGAGGTAATGAAGAaagattttgcttcatt Coding sequence (CDS) from alignment at sc0000726:654..3201+ >TCONS_00029129 ID=TCONS_00029129|Name=TCONS_00029129|organism=Clytia hemisphaerica|type=CDS|length=2772bp|location=Sequence derived from alignment at sc0000726:654..3201+ (Clytia hemisphaerica)
ATGGAAGaaccagaaccatcaaatttTTATGTTGGTGAGACTTTTACCAG
CTTGGAAGATTTAGaatccaaaatcaaaatctttcagcaagaaaattttg
ttcAACTTTGGAAACCCGATTGTCGTCTTTTGGCATCTGCAATTAAGGGT
AATCGACTGAGTAAAGCAAAGAAATGTGCTAACAAAAAATTGGTTTATTC
TGAAGTGAAATACTCATGTGTTCATGGTGGGCAAAAATTTACTTCACGTG
GAACTGGTAAAAGAGCTTCCTAtACTTTGAAGTCAGACTGCCCATTCTTC
GTTAGACTAAGGTTATCCAAGAATGTCCATCATTTGGAAGTCAAAGAAAT
TCTTAATGAACATAACCATGATCTCAATGAGaattTATTCAGGCATCTTC
CCCAACAGAGGAGACTgtcaaatgatgaaaaaaaaaaggcaACACACATG
ATGGATCTCCAGGTCAACAAAAAAATGCTGAAGAACCAAATTCAAGCGGA
GACTGGTAAGGTGGTTCTTCTGAAAGATTTGAGTAACCTGGCGCAAAAGA
GTCAGAACAAAGATACATTTGATGATGTCATAAATATGCTAAGAAACCAA
TATGGTTGCACTGTGGAAATGAACGTGAGTGAAAATGGAGATTTTATCGG
GCTCTTCTTTCAGGACGAGGTAATGAAGAaagattttgcttcaATGGAAG
aaccagaaccatcaaatttTTATGTTGGTGAGACTTTTACCAGCTTGGAA
GATTTAGaatccaaaatcaaaatctttcagcaagaaaattttgttcAACT
TTGGAAACCCGATTGTCGTCTTTTGGCATCTGCAATTAAGGGTAATCGAC
TGAGTAAAGCAAAGAAATGTGCTAACAAAAAATTGGTTTATTCTGAAGTG
AAATACTCATGTGTTCATGGTGGGCAAAAATTTACTTCACGTGGAACTGG
TAAAAGAGCTTCCTAtACTTTGAAGTCAGACTGCCCATTCTTCGTTAGAC
TAAGGTTATCCAAGAATGTCCATCATTTGGAAGTCAAAGAAATTCTTAAT
GAACATAACCATGATCTCAATGAGaattTATTCAGGCATCTTCCCCAACA
GAGGAGACTgtcaaatgatgaaaaaaaaaaggcaACACACATGATGGATC
TCCAGGTCAACAAAAAAATGCTGAAGAACCAAATTCAAGCGGAGACTGGT
AAGGTGGTTCTTCTGAAAGATTTGAGTAACCTGGCGCAAAAGAGTCAGAA
CAAAGATACATTTGATGATGTCATAAATATGCTAAGAAACCAATATGGTT
GCACTGTGGAAATGAACGTGAGTGAAAATGGAGATTTTATCGGGCTCTTC
TTTCAGGACGAGGTAATGAAGAaagattttgcttcaATGGAAGaaccaga
accatcaaatttTTATGTTGGTGAGACTTTTACCAGCTTGGAAGATTTAG
aatccaaaatcaaaatctttcagcaagaaaattttgttcAACTTTGGAAA
CCCGATTGTCGTCTTTTGGCATCTGCAATTAAGGGTAATCGACTGAGTAA
AGCAAAGAAATGTGCTAACAAAAAATTGGTTTATTCTGAAGTGAAATACT
CATGTGTTCATGGTGGGCAAAAATTTACTTCACGTGGAACTGGTAAAAGA
GCTTCCTAtACTTTGAAGTCAGACTGCCCATTCTTCGTTAGACTAAGGTT
ATCCAAGAATGTCCATCATTTGGAAGTCAAAGAAATTCTTAATGAACATA
ACCATGATCTCAATGAGaattTATTCAGGCATCTTCCCCAACAGAGGAGA
CTgtcaaatgatgaaaaaaaaaaggcaACACACATGATGGATCTCCAGGT
CAACAAAAAAATGCTGAAGAACCAAATTCAAGCGGAGACTGGTAAGGTGG
TTCTTCTGAAAGATTTGAGTAACCTGGCGCAAAAGAGTCAGAACAAAGAT
ACATTTGATGATGTCATAAATATGCTAAGAAACCAATATGGTTGCACTGT
GGAAATGAACGTGAGTGAAAATGGAGATTTTATCGGGCTCTTCTTTCAGG
ACGAGGTAATGAAGAaagattttgcttcaATGGAAGaaccagaaccatca
aatttTTATGTTGGTGAGACTTTTACCAGCTTGGAAGATTTAGaatccaa
aatcaaaatctttcagcaagaaaattttgttcAACTTTGGAAACCCGATT
GTCGTCTTTTGGCATCTGCAATTAAGGGTAATCGACTGAGTAAAGCAAAG
AAATGTGCTAACAAAAAATTGGTTTATTCTGAAGTGAAATACTCATGTGT
TCATGGTGGGCAAAAATTTACTTCACGTGGAACTGGTAAAAGAGCTTCCT
AtACTTTGAAGTCAGACTGCCCATTCTTCGTTAGACTAAGGTTATCCAAG
AATGTCCATCATTTGGAAGTCAAAGAAATTCTTAATGAACATAACCATGA
TCTCAATGAGaattTATTCAGGCATCTTCCCCAACAGAGGAGACTgtcaa
atgatgaaaaaaaaaaggcaACACACATGATGGATCTCCAGGTCAACAAA
AAAATGCTGAAGAACCAAATTCAAGCGGAGACTGGTAAGGTGGTTCTTCT
GAAAGATTTGAGTAACCTGGCGCAAAAGAGTCAGAACAAAGATACATTTG
ATGATGTCATAAATATGCTAAGAAACCAATATGGTTGCACTGTGGAAATG
AACGTGAGTGAAAATGGAGATTTTATCGGGCTCTTCTTTCAGGACGAGGT
AATGAAGAaagattttgcttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029129-exon-sc0000726-1491911889:654..1084 | TCONS_00029129-exon-sc0000726-1491911889:654..1084 | Clytia hemisphaerica | exon |
| TCONS_00029129-exon-sc0000726-1510915933:654..1084 | TCONS_00029129-exon-sc0000726-1510915933:654..1084 | Clytia hemisphaerica | exon |
| TCONS_00029129-exon-sc0000726-1575043694:654..1084 | TCONS_00029129-exon-sc0000726-1575043694:654..1084 | Clytia hemisphaerica | exon |
| TCONS_00029129-exon-sc0000726-1491911889:1723..1831 | TCONS_00029129-exon-sc0000726-1491911889:1723..1831 | Clytia hemisphaerica | exon |
| TCONS_00029129-exon-sc0000726-1510915933:1723..1831 | TCONS_00029129-exon-sc0000726-1510915933:1723..1831 | Clytia hemisphaerica | exon |
| TCONS_00029129-exon-sc0000726-1575043694:1723..1831 | TCONS_00029129-exon-sc0000726-1575043694:1723..1831 | Clytia hemisphaerica | exon |
| TCONS_00029129-exon-sc0000726-1491911889:2494..2716 | TCONS_00029129-exon-sc0000726-1491911889:2494..2716 | Clytia hemisphaerica | exon |
| TCONS_00029129-exon-sc0000726-1510915933:2494..2716 | TCONS_00029129-exon-sc0000726-1510915933:2494..2716 | Clytia hemisphaerica | exon |
| TCONS_00029129-exon-sc0000726-1575043694:2494..2716 | TCONS_00029129-exon-sc0000726-1575043694:2494..2716 | Clytia hemisphaerica | exon |
| TCONS_00029129-exon-sc0000726-1491911889:3111..3201 | TCONS_00029129-exon-sc0000726-1491911889:3111..3201 | Clytia hemisphaerica | exon |
| TCONS_00029129-exon-sc0000726-1510915933:3111..3201 | TCONS_00029129-exon-sc0000726-1510915933:3111..3201 | Clytia hemisphaerica | exon |
| TCONS_00029129-exon-sc0000726-1575043694:3111..3201 | TCONS_00029129-exon-sc0000726-1575043694:3111..3201 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000726 | supercontig | sc0000726:654..3201 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004330 | FAR1_DNA_bnd_dom |
Blast
The following BLAST results are available for this feature:
|
