TCONS_00029120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029120
Unique NameTCONS_00029120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029120 ID=TCONS_00029120|Name=TCONS_00029120|organism=Clytia hemisphaerica|type=transcript|length=359bp
AGCTAGATTTTGAATATCTCTACCACCAGGATCAGTGACGTCACCGCCCC
ACCAGTCAGAATTCTTGACATTAAAATCCCCAAGAAAAATTGTAGCAGTC
GGAGAAAAATTATTAATGTTTATAATTGTCTCCTCCCATTTACGAGAGAA
AACCTCAAACTCATCAGAAGTCTGACTGGGGGAGCGATaacaaagagaaa
gaaaaaaccgTTTCCCACAAGACATTCATCTAATGTAGTGAGTTGTGGTT
TCACATCGAGATCTAGATGATCTCGGTAATAGATACAAACACCACCTCTC
TTATTATTAGAGGGATGGTCGCATCTTTTGATCTCATAATTATCAATGGC
CAGCCTAGG
Run BLAST on NCBI

transcript from alignment at sc0000725:65160..65518

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029120 ID=TCONS_00029120|Name=TCONS_00029120|organism=Clytia hemisphaerica|type=transcript|length=359bp|location=Sequence derived from alignment at sc0000725:65160..65518 (Clytia hemisphaerica)
CCTAGGCTGGCCATTGATAATTATGAGATCAAAAGATGCGACCATCCCTC
TAATAATAAGAGAGGTGGTGTTTGTATCTATTACCGAGATCATCTAGATC
TCGATGTGAAACCACAACTCACTACATTAGATGAATGTCTTGTGGGAAAc
ggttttttctttctctttgttATCGCTCCCCCAGTCAGACTTCTGATGAG
TTTGAGGTTTTCTCTCGTAAATGGGAGGAGACAATTATAAACATTAATAA
TTTTTCTCCGACTGCTACAATTTTTCTTGGGGATTTTAATGTCAAGAATT
CTGACTGGTGGGGCGGTGACGTCACTGATCCTGGTGGTAGAGATATTCAA
AATCTAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016561XLOC_016561Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029120-exon-sc0000725-1491911889:65160..65518TCONS_00029120-exon-sc0000725-1491911889:65160..65518Clytia hemisphaericaexon
TCONS_00029120-exon-sc0000725-1510915933:65160..65518TCONS_00029120-exon-sc0000725-1510915933:65160..65518Clytia hemisphaericaexon
TCONS_00029120-exon-sc0000725-1575043694:65160..65518TCONS_00029120-exon-sc0000725-1575043694:65160..65518Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000725supercontigsc0000725:65160..65518 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.747077	0.611888	0	1.54836	0.412514	0	0.178458	1.38309	0.354599	0.365975	0	0.399389	1.96072	0.934079	1.55856	0.753976	1.22177	1.27504	0.710838	0.669911	1.02387	2.28975	0.735423	1.24706	0	0.535426	3.28249	0	0.0319339	0.857877
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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