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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029094 ID=TCONS_00029094|Name=TCONS_00029094|organism=Clytia hemisphaerica|type=transcript|length=1448bp
GCAAATCGCGTCCTCTCATTTTTGTGTCCTCCGTTCACTGGATACAGGTT
TGCCATCTAGAAACTACATCCAGTGAATTATCGGAAAAACAGAATCCTGC
AAAAACAACAAGATGTGTTTGGATCGGATCGTCTATAGGTCTAGAAAAAT
TTAAGGGATTTCATCATATGATTGAATGTCTTGATTCTTGTGGTGCTTGT
TGTTGGAGTGAGATGCAGTGGTATGTGTGGCCTGGAAATATGTGTATATA
TGCTGGCGACCGAAGGAAGCATTTTGTGCTTTGGATGAGACCCAGTCTGC
CAGAGCCAGTCTATCTTACAGAAAGAAGNGACCGAAGGAAGCATTTTGTC
CTTGGATGAGACCCAGTCTGCCAGAGCCAGTCTTACAGAAAGAAGTTTTT
GGATATAAAAGGAAACGAAAGCAGCAGAAATAGCATTATGTATGACTACA
TTTGCTGATAGTGATGGTCTCGCAGTCATTGTCAGCATAACCAAGCAGAC
CAGATTGGTGGTGATATCAAAAAGCTAagtattttttgagtatttttttg
taatatgaataccaaatttataatgTGAACTAGATACATCGAACCATTAT
CATCTCAAGCTTTAAATTTATATATAGAACCTTGTGTCCACAAGCTCACA
AAACAGTTGTAACTTAAGGACAGATTATTGTTTAAGGCTGCTAATGATTC
TAATCTTGGTGGTGTCCTTTTTTTTTCCAGTAAATATGTTTTTGaatcaa
attgaaattgaaaagtttaagttgagaaaatcaaaaatgaagatccttat
gaaatttgattgacagttttgtTTACCATGCAAACTAAACTGAGGCAAAA
GATTTGATTGACAGTCTCATGAAAAAGAAACTGAGGCAAAAAACAATGAG
GATTATGGGGGAATATTCACCAGTCACACATGTTTTCCCCAATGTGCCAG
TGGCAAAttaaaatttggcattttgatCACATATTGTTCACAGAATTTTC
CTTTGTGACagtttgatttgaaaacacAAATATAGCTGTTCTTCTACTGT
GTTCCTTTTTATAAGTACTACAAGAAGAGATTCTTAACCTATATTTATTG
TTGTAAGTATTCAGGGATTTTTCTTAACACTTTTATCTCAGTCAGGAATA
TGCCAGAATGCAGCTGTTTTATAGTTCTACAAACTTTACTGTCAACTGCT
TGGAactaaaaaaatgaataaatccTCCTAAGATGTTTGNTATCTCAGTC
AGGAATATGCCAGAATGCAGCTGTTTTATAGTTCTACAATCTTTACTGTC
AACTGCTTGGAactaaaaaaatgaataaatccTCCTAAGATGTTTGCTTC
AAAAATGtactttcaatttttaaggATATGAGTGGGGGTGATGACAGCGA
TGCATCAGTCGTACCTGTTGGCAATTCAACTGACAATGCAAACGTAAG Run BLAST on NCBI protein sequence of TCONS_00029094-protein >TCONS_00029094-protein ID=TCONS_00029094-protein|Name=TCONS_00029094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
KSRPLIFVSSVHWIQVCHLETTSSELSEKQNPAKTTRCVWIGSSIGLEKF
KGFHHMIECLDSCGACCWSEMQWYVWPGNMCIYAGDRRKHFVLWMRPSLP
EPVYLTERXDRRKHFVLG Run BLAST on NCBI transcript from alignment at sc0000724:10..1457- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029094 ID=TCONS_00029094|Name=TCONS_00029094|organism=Clytia hemisphaerica|type=transcript|length=1448bp|location=Sequence derived from alignment at sc0000724:10..1457- (Clytia hemisphaerica)
GCAAATCGCGTCCTCTCATTTTTGTGTCCTCCGTTCACTGGATACAGGTT
TGCCATCTAGAAACTACATCCAGTGAATTATCGGAAAAACAGAATCCTGC
AAAAACAACAAGATGTGTTTGGATCGGATCGTCTATAGGTCTAGAAAAAT
TTAAGGGATTTCATCATATGATTGAATGTCTTGATTCTTGTGGTGCTTGT
TGTTGGAGTGAGATGCAGTGGTATGTGTGGCCTGGAAATATGTGTATATA
TGCTGGCGACCGAAGGAAGCATTTTGTGCTTTGGATGAGACCCAGTCTGC
CAGAGCCAGTCTATCTTACAGAAAGAAGNGACCGAAGGAAGCATTTTGTC
CTTGGATGAGACCCAGTCTGCCAGAGCCAGTCTTACAGAAAGAAGTTTTT
GGATATAAAAGGAAACGAAAGCAGCAGAAATAGCATTATGTATGACTACA
TTTGCTGATAGTGATGGTCTCGCAGTCATTGTCAGCATAACCAAGCAGAC
CAGATTGGTGGTGATATCAAAAAGCTAAGTATTTTTTGAGTATTTTTTTG
TAATATGAATACCAAATTTATAATGTGAACTAGATACATCGAACCATTAT
CATCTCAAGCTTTAAATTTATATATAGAACCTTGTGTCCACAAGCTCACA
AAACAGTTGTAACTTAAGGACAGATTATTGTTTAAGGCTGCTAATGATTC
TAATCTTGGTGGTGTCCTTTTTTTTTCCAGTAAATATGTTTTTGAATCAA
ATTGAAATTGAAAAGTTTAAGTTGAGAAAATCAAAAATGAAGATCCTTAT
GAAATTTGATTGACAGTTTTGTTTACCATGCAAACTAAACTGAGGCAAAA
GATTTGATTGACAGTCTCATGAAAAAGAAACTGAGGCAAAAAACAATGAG
GATTATGGGGGAATATTCACCAGTCACACATGTTTTCCCCAATGTGCCAG
TGGCAAATTAAAATTTGGCATTTTGATCACATATTGTTCACAGAATTTTC
CTTTGTGACAGTTTGATTTGAAAACACAAATATAGCTGTTCTTCTACTGT
GTTCCTTTTTATAAGTACTACAAGAAGAGATTCTTAACCTATATTTATTG
TTGTAAGTATTCAGGGATTTTTCTTAACACTTTTATCTCAGTCAGGAATA
TGCCAGAATGCAGCTGTTTTATAGTTCTACAAACTTTACTGTCAACTGCT
TGGAACTAAAAAAATGAATAAATCCTCCTAAGATGTTTGNTATCTCAGTC
AGGAATATGCCAGAATGCAGCTGTTTTATAGTTCTACAATCTTTACTGTC
AACTGCTTGGAACTAAAAAAATGAATAAATCCTCCTAAGATGTTTGCTTC
AAAAATGTACTTTCAATTTTTAAGGATATGAGTGGGGGTGATGACAGCGA
TGCATCAGTCGTACCTGTTGGCAATTCAACTGACAATGCAAACGTAAG Coding sequence (CDS) from alignment at sc0000724:10..1457- >TCONS_00029094 ID=TCONS_00029094|Name=TCONS_00029094|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000724:10..1457- (Clytia hemisphaerica)
AAATCGCGTCCTCTCATTTTTGTGTCCTCCGTTCACTGGATACAGGTTTG
CCATCTAGAAACTACATCCAGTGAATTATCGGAAAAACAGAATCCTGCAA
AAACAACAAGATGTGTTTGGATCGGATCGTCTATAGGTCTAGAAAAATTT
AAGGGATTTCATCATATGATTGAATGTCTTGATTCTTGTGGTGCTTGTTG
TTGGAGTGAGATGCAGTGGTATGTGTGGCCTGGAAATATGTGTATATATG
CTGGCGACCGAAGGAAGCATTTTGTGCTTTGGATGAGACCCAGTCTGCCA
GAGCCAGTCTATCTTACAGAAAGAAGNGACCGAAGGAAGCATTTTGTCCT
TGGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029094-exon-sc0000724-1575043694:10..1457 | TCONS_00029094-exon-sc0000724-1575043694:10..1457 | Clytia hemisphaerica | exon |
| TCONS_00029094-exon-sc0000724-1510915933:10..1457 | TCONS_00029094-exon-sc0000724-1510915933:10..1457 | Clytia hemisphaerica | exon |
| TCONS_00029094-exon-sc0000724-1491911889:10..1457 | TCONS_00029094-exon-sc0000724-1491911889:10..1457 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000724 | supercontig | sc0000724:10..1457 - |
Blast
The following BLAST results are available for this feature:
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