TCONS_00029093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029093
Unique NameTCONS_00029093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1080

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029093 ID=TCONS_00029093|Name=TCONS_00029093|organism=Clytia hemisphaerica|type=transcript|length=1080bp
CTGCAAAAACAACAAGATGTGTTTGGATCGGATCGTCTATAGGTCTAGAA
AAATTTAAGGGATTTCATCATATGATTGAATGTCTTGATTCTTGTGGTGC
TTGTTGTTGGAGTGAGATGCAGTGGTATGTGTGGCCTGGAAATATGTGTA
TATATGCTGGCGACCGAAGGAAGCATTTTGTGCTTTGGATGAGACCCAGT
CTGCCAGAGCCAGTCTATCTTACAGAAAGAAGNGACCGAAGGAAGCATTT
TGTCCTTGGATGAGACCCAGTCTGCCAGAGCCAGTCTTACAGAAAGAAGT
TTTTGGATATAAAAGGAAACGAAAGCAGCAGAAATAGCATTATGTATGAC
TACATTTGCTGATAGTGATGGTCTCGCAGTCATTGTCAGCATAACCAAGC
AGACCAGATTGGTGGTGATATCAAAAAGCTAagtattttttgagtatttt
tttgtaatatgaataccaaatttataatgTGAACTAGATACATCGAACCA
TTATCATCTCAAGCTTTAAATTTATATATAGAACCTTGTGTCCACAAGCT
CACAAAACAGTTGTAACTTAAGGACAGATTATTGTTTAAGGCTGCTAATG
ATTCTAATCTTGGTGGTGTCCTTTTTTTTTCCAGTAAATATGTTTTTGaa
tcaaattgaaattgaaaagtttaagttgagaaaatcaaaaatgaagatcc
ttatgaaatttgattgacagttttgtTTACCATGCAAACTAAACTGAGGC
AAAAGATTTGATTGACAGTCTCATGAAAAAGAAACTGAGGCAAAAAACAA
TGAGGATTATGGGGGAATATTCACCAGTCACACATGTTTTCCCCAATGTG
CCAGTGGCAAAttaaaatttggcattttgatCACATATTGTTCACAGAAT
TTTCCTTTGTGACagtttgatttgaaaacacAAATATAGCTGTTCTTCTA
CTGTGTTCCTTTTTATAAGTACTACAAGAAGAGATTCTTAACCTATATTT
ATTGTTgATATGAGTGGGGGTGATGACAGCGATGCATCAGTCGTACCTGT
TGGCAATTCAACTGACAATGCAAACGTAAG
Run BLAST on NCBI

transcript from alignment at sc0000724:10..1361-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029093 ID=TCONS_00029093|Name=TCONS_00029093|organism=Clytia hemisphaerica|type=transcript|length=1352bp|location=Sequence derived from alignment at sc0000724:10..1361- (Clytia hemisphaerica)
CTGCAAAAACAACAAGATGTGTTTGGATCGGATCGTCTATAGGTCTAGAA
AAATTTAAGGGATTTCATCATATGATTGAATGTCTTGATTCTTGTGGTGC
TTGTTGTTGGAGTGAGATGCAGTGGTATGTGTGGCCTGGAAATATGTGTA
TATATGCTGGCGACCGAAGGAAGCATTTTGTGCTTTGGATGAGACCCAGT
CTGCCAGAGCCAGTCTATCTTACAGAAAGAAGNGACCGAAGGAAGCATTT
TGTCCTTGGATGAGACCCAGTCTGCCAGAGCCAGTCTTACAGAAAGAAGT
TTTTGGATATAAAAGGAAACGAAAGCAGCAGAAATAGCATTATGTATGAC
TACATTTGCTGATAGTGATGGTCTCGCAGTCATTGTCAGCATAACCAAGC
AGACCAGATTGGTGGTGATATCAAAAAGCTAAGTATTTTTTGAGTATTTT
TTTGTAATATGAATACCAAATTTATAATGTGAACTAGATACATCGAACCA
TTATCATCTCAAGCTTTAAATTTATATATAGAACCTTGTGTCCACAAGCT
CACAAAACAGTTGTAACTTAAGGACAGATTATTGTTTAAGGCTGCTAATG
ATTCTAATCTTGGTGGTGTCCTTTTTTTTTCCAGTAAATATGTTTTTGAA
TCAAATTGAAATTGAAAAGTTTAAGTTGAGAAAATCAAAAATGAAGATCC
TTATGAAATTTGATTGACAGTTTTGTTTACCATGCAAACTAAACTGAGGC
AAAAGATTTGATTGACAGTCTCATGAAAAAGAAACTGAGGCAAAAAACAA
TGAGGATTATGGGGGAATATTCACCAGTCACACATGTTTTCCCCAATGTG
CCAGTGGCAAATTAAAATTTGGCATTTTGATCACATATTGTTCACAGAAT
TTTCCTTTGTGACAGTTTGATTTGAAAACACAAATATAGCTGTTCTTCTA
CTGTGTTCCTTTTTATAAGTACTACAAGAAGAGATTCTTAACCTATATTT
ATTGTTGTAAGTATTCAGGGATTTTTCTTAACACTTTTATCTCAGTCAGG
AATATGCCAGAATGCAGCTGTTTTATAGTTCTACAAACTTTACTGTCAAC
TGCTTGGAACTAAAAAAATGAATAAATCCTCCTAAGATGTTTGNTATCTC
AGTCAGGAATATGCCAGAATGCAGCTGTTTTATAGTTCTACAATCTTTAC
TGTCAACTGCTTGGAACTAAAAAAATGAATAAATCCTCCTAAGATGTTTG
CTTCAAAAATGTACTTTCAATTTTTAAGGATATGAGTGGGGGTGATGACA
GCGATGCATCAGTCGTACCTGTTGGCAATTCAACTGACAATGCAAACGTA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016548XLOC_016548Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029093-exon-sc0000724-1575043694:356..1361TCONS_00029093-exon-sc0000724-1575043694:356..1361Clytia hemisphaericaexon
TCONS_00029093-exon-sc0000724-1575043694:10..83TCONS_00029093-exon-sc0000724-1575043694:10..83Clytia hemisphaericaexon
TCONS_00029093-exon-sc0000724-1510915933:356..1361TCONS_00029093-exon-sc0000724-1510915933:356..1361Clytia hemisphaericaexon
TCONS_00029093-exon-sc0000724-1510915933:10..83TCONS_00029093-exon-sc0000724-1510915933:10..83Clytia hemisphaericaexon
TCONS_00029093-exon-sc0000724-1491911889:356..1361TCONS_00029093-exon-sc0000724-1491911889:356..1361Clytia hemisphaericaexon
TCONS_00029093-exon-sc0000724-1491911889:10..83TCONS_00029093-exon-sc0000724-1491911889:10..83Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000724supercontigsc0000724:10..1361 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.75389	2.77118	0.952618	1.78781	1.76283	2.31159	6.91036	6.80436	5.14329	4.04998	8.4118	6.61088	6.81752	5.6817	10.3991	12.1374	10.1766	11.6582	8.5461	9.75613	6.10796	6.78328	1.42439	1.85418	7.2048	6.6795	2.4541	1.57727	1.94299	1.43668
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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