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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029084 ID=TCONS_00029084|Name=TCONS_00029084|organism=Clytia hemisphaerica|type=transcript|length=1215bp
accTTTCAAAGGGGGTTCATGATTGGTCCTTCAGTTTGATTGGCTCAAGC
TTTATCACGTGACTAACATGAACGAATCATTTTGAATTCTGATTTCAATG
AGAAAGGAGAAAGTAGATTTTTGCCTTCCAGCTCTTTATAAAGGGAGAAA
GAAATGGCAAGAATAAGTTAATTTGTCTATTGTATTCTTGTCGAGAAGAG
CGATCATTTTTGTGATAAGAGAAGGTTATTGGGATCCTGATTTGAAGTTG
TTTAACAATCCTAATCTACATGCCTGCTTATAAGAATAAGGAGCAGCAAC
ACACAGGCGGTGTTTCCAACCATCATTCTGTGGTCACTTCTTCAAACGAA
GACTTAGATCATCATTTTAAAGTCAACAGTATCATCGAGAACCTACACGC
AGCCTGCGATCGTGCAAGTAGAGTGGAAAGCGCACAGTCTAGCGCAATGA
TTTCTCTTCTTCCTCCCCCAGATCAACACCTCATCGCGCCACCTAACCCT
CAACAATCATTCGACGATCTTCTTTCCAACGTGCAATCGAACCATAATCA
GCCGTTCCAATCGCAAGTCGATCATGTCTTAGCCCAATTCCCGCCGGACA
CTTTTAAAAACGCACAGCTTCACTCCATGACGTTCGGTGGAAGTGGTCCG
ACCGGTGATCAAACGGACGCGGACTTGAACAACAACCATCCGGGAATGAA
TAATCGCCCGATCATGAACAACAACAATCAAACTAAACTCACCGACGATG
AAGACGATTCTAGTGATGATATGGACCGCCCTTCAAAACAGAAACGCCAT
CGCACCCGTTTTTCACCCGCCCAACTGAACGAGCTTGAGCGTTATTTCAG
TAAAACACATTACCCTGACATCTTCGTGCGCGAGGAGTTGGCGATGCGCA
TTGGACTGACCGAATCGAGAGTTCAAGTTTGGTTTCAAAACCGTCGTGCC
AAATGGAAGAAACGAAAGAAGACCATGTCTTTATTTCACCACAACAACGG
CCTCTTCCCTTCCTACTTCAATCAGAACCTTCAACCACGCGAGTCGTCTT
GCTACCACAACGAACCTCCTCATATCTGGCCTTCTGCGTCACCCACTAAC
TTTCCATCCGTCACACCGACTCAAACTTCCGGAGCNttttttttgagctt
ttgagGAAACAGATTtattataaatagaaaaaataacatgCTTGTGACAT
TCGCCTGCGAAAACG Run BLAST on NCBI transcript from alignment at sc0000724:77501..84198+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029084 ID=TCONS_00029084|Name=TCONS_00029084|organism=Clytia hemisphaerica|type=transcript|length=6698bp|location=Sequence derived from alignment at sc0000724:77501..84198+ (Clytia hemisphaerica)
accTTTCAAAGGGGGTTCATGATTGGTCCTTCAGTTTGATTGGCTCAAGC
TTTATCACGTGACTAACATGAACGAATCATTTTGAATTCTGATTTCAATG
AGAAAGGAGAAAGTAGATTTTTGCCTTCCAGCTCTTTATAAAGGGAGAAA
GAAATGGCAAGAATAAGTTAATTTGTCTATTGTATTCTTGTCGAGAAGAG
CGATCATTTTTGTGATAAGAGAAGGTTATTGGGATCCTGATTTGAAGTTG
TTTAACAATCCTAATCTACATGCCTGCTTATAAGAATAAGTACATgtata
ttaaattttatttatttttgtgtttacagtattaatttgtttttaattta
cgCCTGAACCTTTTAGTTTTCCTCTCCTGTCAGGTTTTTTGGTTCTTATG
GGttctatttttcgatttttgctgAATTAATTTCAATCCATAGAGTTTTT
TCATTAAATAAAAGCTTCGACATTCTACAGTTTACTTGTCTTAGTAGAGA
GGGTGACATTTTCAAATAGGGTGGGGACTTCAATTTCTAACTTGAATTAC
ATAGATGAATTTCTACTTTGcttctttttctcttttgttagtTCTTCACA
ATGTATTctcttctttgttttcatggaCTACACGGGGAAAATCTGTACTT
CCCATTCGCTAGTTCTTTAAAGCTATTCTCCCCTTATTCTTTCGTGATTC
ttctttgaaaacaaaaacaaagaagaaaattctAAAGACACAAGGAAGTG
AAAAGATAGAAATGaaaagatttttataaaaagccAATGTATTCATTGTG
GAATTTTTAATATCTGTGAGGTTTCGGCCGAAATGTCATCCCATTCTAAT
TTGGTTTTCTTCTCACCTAGGGAGCAGCAACACACAGGCGGTGTTTCCAA
CCATCATTCTGTGGTCACTTCTTCAAACGAAGACTTAGATCATCATTTTA
AAGTCAACAGTATCATCGAGAACCTACACGCAGCCTGCGATCGTGCAAGT
AGAGTGGAAAGCGCACAGTCTAGCGCAATGATTTCTCTTCTTCCTCCCCC
AGGTATGTTTTACTGTAATTATTTTTTAGTGATTTCTCCAAATTATTGTT
TTGTATCATTCATTAGTTGATTTCTAGTTGCTTTACCGTTCTCTATTTCT
TCCCTTGAATGTCAaagaattttcactttttatctttttttaaaaggaaG
AAGCAAATTAAGGACTAATTTGCGCCTAATTACGGATTGATTAGTTAGTG
ATAAATGAAAATTCATTTAtagtttcttactattttttTACTACTTAATT
CTTTCTCGGTTctttgaagagaattttttgaattgctaataaattatttt
tcaatttttgtgttcgaaatgaattttattcggaacttttattttttaaa
tattttgatcatTCATTTTGGCTGCGTAGTCATTGAAATTAATCTTAATT
TTCTtcaattaattttgaattttaatttgcGCTTTGCTTTTTAATCTAGC
GTACGAAATAGACGCTGATTTTGCAATAGACACGCGAGCAACAATATTtt
agaaatcaaaaaagaaagtgcaaaaaatttggcctaactttttttgaaaa
tgaaattaattcTTTAATAATCGAAATAATCCTAGCTTAAAAAATTCTAT
TCGTCAATAGATCAACACCTCATCGCGCCACCTAACCCTCAACAATCATT
CGACGATCTTCTTTCCAACGTGCAATCGAACCATAATCAGCCGTTCCAAT
CGCAAGTCGATCATGTCTTAGCCCAATTCCCGCCGGACACTTTTAAAAAC
GCACAGCTTCACTCCATGACGTTCGGTGGAAGTGGTCCGACCGGTGATCA
AACGGACGCGGACTTGAACAACAACCATCCGGGAATGAATAATCGCCCGA
TCATGAACAACAACAATCAAACTAAACTCACCGACGATGAAGACGATTCT
AGTGATGATATGGACCGCCCTTCAAAACAGAAACGCCATCGCACCCGTTT
TTCACCCGCCCAACTGAACGAGCTTGAGCGTTATTTCAGTAAAACACATT
ACCCTGACATCTTCGTGCGCGAGGAGTTGGCGATGCGCATTGGACTGACC
GAATCGAGAGTTCAAGTAagttgttttctttttacattacAAATCTGTTT
CAATTTCCTCATCATTACTTGCTTTAAATCCACTTTTTGTCGTGTGCAAC
GCatgataaaatcaaaaactttaaatatattttacaaTTATAAACCCTTG
ATGAAAATTCCCTCAGAAACTGGAATAAGTCGAATCACTTATAACACAAC
ATATTGCAATCGCTTCACCTAAACTTTTGCTGGTACTTTTTCACCACCTT
CACACTCTCCTGGAAGCGTTTTTCCATTTCTACAGGTATTTGTTGAAGGT
GATGTTTCCTCCAGATTTATAGCCTTTTTCTTGTGCTAATTTATGTTTAA
TTTAACGATTAAATTAACGAGAGGTAATGAATACTAATCGGTGATAATTA
AATATCTGCTGATTAATTAGTTTAATGCAGATAATTTATTGAATTTACAC
TTTGTTTGCAAACAAGAAGAAATGAGGGCTTTTAAGAAAGAAGGGAAGAC
GGGTTTTAATTTCTCGATCTTGTTTCTAAGGTAAAATTACTTGGTAAAAT
CTTGGAATTCAACTGTTTCCAAAAAAATAGAGAGTTTAGACATGAAAGGT
TTtgcgatttttgaaaaacatttctaaTGAAACTGTGTGAAAAGTTCTTC
CGAAAAAACGTTGAGGCGGTTTCAGTTTTTTGTTCTTCCTTACAGTCTAT
TAAACTCTCGTTTTCATGAGTTTTGAAAGGGCTTTCAAGCAAGGATGNTC
CTTACAGTCTATTAAACTCTCGTTTTCATGAGTTTTGAAAGGACTTTCAA
GCAAGGATGTTAAGTTAAACGCACTGCTGAAAGTTTATTTGTAGGAACGG
TCCGCAAAGCGGCTCATTAGTACACTCATTCgataagaaaatcttttttt
gattttatgttgAAAAAGTGAGTTAGATATACCTTACTAATTGAACCAAA
CCTTTTTCATAAATCTCCAAAAAGAAGATACATTTTATCAATTCTTCGTA
GCAGGATAATAAAGAAGAGTCTAACGAGGAGGTGTTAACCGCGTTGTCAA
AAGCACTATTTGTGCCCCCTAAACCTCTTGCCCAACAGGTGGAACTCAAT
CCTGTTACTTAAAACGTCCTCTAACCAACCCTCTAAATAGTGCGCTAAAC
GGTTTTGTCTAATTAATATACCCTCGAGATTCCCTCTTTATATAGTTGGG
GCCCTAGGATTATCTGCACCTAGTCTATAGTATTTGTAACTTGCCATTGA
TTTGACGGAGTATGCAAATCAGAAAAACAATGGTCCTTCTTTTTGGGCTT
CAAATTAGACATCTTTTGCTTCAGTATATGTTCCTTTGTGCTCTAGTCCT
TCTCAAATTTGCTCCTTCTTTGTACTTTCATTATGACTTTTGACGTCGTC
ATTTTCCATCCATTACCACTTTTTAGCGCCCTAGCTTAACTGGACTTTTT
CCTCTAAAACctttgaattgttatttttcaatttgaGATATTTGAAGTCT
GCTTGAAGATATAAACTGGTTTAAGATGTTTTTGAATTGCCCAGGTTTTC
TTCTTCTCTGTGTGACAGCAAAAATGTTTGCTCAAATGAACAGATTTTTT
TGTATGTTGTTTTTgcattaaaaagtaattttccTTGATAAAACTGAGAG
GGTTGATTTTTGGGGAGAACACAGCCTTCTTATATGTCTCTAAGGAACTG
AAACCTGTTCACTTTTCATTCTTCATTTAAAAGCTTTTTCCTGTCAGAAA
GTCGTATTGTTTTGTTAAAGTCACACAGAAAACAATAAATCTCGGCTGTT
CTCTTCTCTTTCTGCCTGAAAGAAAATTGGGGAGAAATTTAGGTCTCACT
CTCATTTATTTACTATCTGATATTTGATGTGAAAACTAAAGAAAATCCTT
AGAGTAAAACCAAACACTCTTGTGTTAAAGTAGAGTGTTAAACCAATAAC
CCAAAGCCCTAAGACAGATGCCTAACTTTGACCAATCagaattttttgaa
tatatAAATCCTCGCAAAATTTATAACATCTGTGGGTAACGAATTTGCCG
TATGGATCGTCTTCCGTGTTTATCTTCTATTTCCTTAAGACAAGAAGGGT
ATTAGGTCTCCTATATATGAAGCCTCCGATTTTTGATAGCTTCCCTTTGT
TACATTAATACTATGTTGCGAACAGATTTTGATTTACGAAACATAGATTA
GGCGATAAGGTGAAGTCGATGATAACACACTGCGATCAGAGAGTGTTGAG
GGATTACAGAATTATTGAATAGCCCTGGGAAAGTACAGTCTGGTGTTCTG
GACATGTTTGTAATGAAAAGCTATGATTAAAATCCCGATTATTTTGAAAG
ACAAACATTACTTTAGAAAGttggaaaaaggaaaaataatgtATTGAAAT
Atcatgatgaaaaatgaaaattttatgatacttcttttttttgagctttt
gagGAAACAGATTtattataaatagaaaaaataacatgCTTGTGACATTC
GCCTGCGAAAACGATGAACCCTTATTTTTAcgattctttttcaaaagttg
gTAAATAATCCTCTTGCCCACACTTTTCCGAAGCTCTCGAATTTTGCGTC
ACACTCTGGCAACTAAGAAGGGTACTTAAAAGCGAGGCGTTTGGATATAA
CCAGCTTGCAAGAGTTAAGCGGCTTCTATACTTTTACCCTGATAATCGAT
GCACTCACGGAGGGGGGAGACTCGGGTTATCCAAATCGAAAGTTGCACCA
TTTAAAACTATCAAATTGTTTGTTATTAATTTCTAATACTTTGTTGACAG
TCAAGGTTATCATTTTGCTATGATGAGATCAAAAAGTAGATGGAATGGAT
TGAAAGATCCATCATCCTACCGATCAAAGAGATAATCATGCAGCGACAAT
CGATATAAGCTCCTTTGTGACATGTTAATATGTGCCTTTGAATGTTATTG
TATCAGGGACATTAATACTTCTCTGGTACAATTACATCAGAAActtcata
ttttgatattttgaaaaacaaatatcGAACTATTTGATGCAGGTTAGCGG
GTGACACCTAAGTGATCAGCATTGGGAAAAATTCTCAAAGAATCTCATTT
TATGATTGCATAATATTCCAAAGTGCTCGATATTTGTCTAGCCTgtgttt
tttatatattttgaatacGACTCTTCCAAAAGTAGATTGGCATTTTTGTT
GAATATCTGCCAAGCTCGTTAACGGTACCATCAAACAAACGaaatttgag
attatttttttttcataaaaacatcccataaatcttttttattagaatac
tTTAGTACATAGCACAGATTTCTTTTGGAAGATGGAGAAAGAAAAGGGCG
TTGCCCGTTTATATAATTGTGAAATTTATTGACTGATTTCATAGTGCAAA
ATTATTTAAATGAAACTCAATATTTTCGACGGGTGAAATCTTAAATCTTT
GCTGAGAGTGTTGACAATATTGCTTTGCTTATAGCATATTGTTGTAATAC
AATCGTCAAATGATGTTTGAAAACAAATCGTTTCAACAAACTCTGTGGAT
TACATTTCATTTACGCGTTTTCTGTATTTATATTCACGTGGGCTTCACCT
GGAACCTTGCTCCGTGGGAATATGCCTCTTTCCGATCTCTTTAACATTCG
ATGAAAATGACCCTCAATATAAGTGATGAGTTGGCTTCTGCGTTCAGAAA
TCTTTAAATATAAATGTAAACTTTTAATAATCATAATTTGTTTTCGTCTG
CAATTTAATTTGGTCCATTAAAATNCTTTTAATCATCATAATTTATTTTC
GTCTGCAATTTAATTTAGTCCATTAAAagtatttcaatttcaatttgtaA
AAACAGTAGGTTTTTAGGTCTAATAAAAGTGGCAAAGATATGTAATTAAT
TTCCAGAcgaaaaacagcaaaatatgcaaaaaatgaTGGAGCTAATGAGT
GAAGCAGATTTAGTTTTTTCCCAttgataatttttctcaaactttGTTAA
TGATTTTCACAGACACATAATTCTCACAAAGGGAAGTGCAATATTTGTAA
GATCAAATAACCACCGCTGAAGGATAAGTTTAATGAGATTATCTAGATAA
GTTCTATATgttttgttaaactttttcttttgaacaCTGGATTTGAGTTT
TCCCTACATCCCATTTACGTCAATTTTTGTTCACTCGAAGCCAACGGAAG
AAATGTCGTATTTCCATTCCTCCTTCCTCGCGATAGCAATATTTTCAACA
TCCAGCCTGCACGAACATCCAGCCTGCACGAActcaccaacttttttttc
tattgacAGGTTTGGTTTCAAAACCGTCGTGCCAAATGGAAGAAACGAAA
GAAGACCATGTCTTTATTTCACCACAACAACGGCCTCTTCCCTTCCTACT
TCAATCAGAACCTTCAACCACGCGAGTCGTCTTGCTACCACAACGAACCT
CCTCATATCTGGCCTTCTGCGTCACCCACTAACTTTCCATCCGTCACACC
GACTCAAACTTCCGGAGCNttttttttgagcttttgagGAAACAGATTta
ttataaatagaaaaaataacatgCTTGTGACATTCGCCTGCGAAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00029084-exon-sc0000724-1491911889:77501..77789 | TCONS_00029084-exon-sc0000724-1491911889:77501..77789 | Clytia hemisphaerica | exon |
| TCONS_00029084-exon-sc0000724-1510915933:77501..77789 | TCONS_00029084-exon-sc0000724-1510915933:77501..77789 | Clytia hemisphaerica | exon |
| TCONS_00029084-exon-sc0000724-1575043694:77501..77789 | TCONS_00029084-exon-sc0000724-1575043694:77501..77789 | Clytia hemisphaerica | exon |
| TCONS_00029084-exon-sc0000724-1491911889:78371..78552 | TCONS_00029084-exon-sc0000724-1491911889:78371..78552 | Clytia hemisphaerica | exon |
| TCONS_00029084-exon-sc0000724-1510915933:78371..78552 | TCONS_00029084-exon-sc0000724-1510915933:78371..78552 | Clytia hemisphaerica | exon |
| TCONS_00029084-exon-sc0000724-1575043694:78371..78552 | TCONS_00029084-exon-sc0000724-1575043694:78371..78552 | Clytia hemisphaerica | exon |
| TCONS_00029084-exon-sc0000724-1491911889:79161..79615 | TCONS_00029084-exon-sc0000724-1491911889:79161..79615 | Clytia hemisphaerica | exon |
| TCONS_00029084-exon-sc0000724-1510915933:79161..79615 | TCONS_00029084-exon-sc0000724-1510915933:79161..79615 | Clytia hemisphaerica | exon |
| TCONS_00029084-exon-sc0000724-1575043694:79161..79615 | TCONS_00029084-exon-sc0000724-1575043694:79161..79615 | Clytia hemisphaerica | exon |
| TCONS_00029084-exon-sc0000724-1491911889:83910..84198 | TCONS_00029084-exon-sc0000724-1491911889:83910..84198 | Clytia hemisphaerica | exon |
| TCONS_00029084-exon-sc0000724-1510915933:83910..84198 | TCONS_00029084-exon-sc0000724-1510915933:83910..84198 | Clytia hemisphaerica | exon |
| TCONS_00029084-exon-sc0000724-1575043694:83910..84198 | TCONS_00029084-exon-sc0000724-1575043694:83910..84198 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000724 | supercontig | sc0000724:77501..84198 + |
Blast
BLAST of TCONS_00029084 vs. Swiss-Prot (Human)
Match: OTP (Homeobox protein orthopedia OS=Homo sapiens GN=OTP PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 5.336e-26 Identity = 58/73 (79.45%), Postives = 65/73 (89.04%), Query Frame = 3
Query: 795 RHRTRFSPAQLNELERYFSKTHYPDIFVREELAMRIGLTESRVQVWFQNRRAKWKKRKKTMSLFHHNNGLFPS 1013
RHRTRF+PAQLNELER F+KTHYPDIF+REELA+RIGLTESRVQVWFQNRRAKWKKRKKT ++F L P+
Sbjct: 106 RHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPT 178
The following BLAST results are available for this feature:
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