TCONS_00029079 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00029079
Unique Name	TCONS_00029079
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2820

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000724:51825..62439+

transcript sequence

>TCONS_00029079 ID=TCONS_00029079|Name=TCONS_00029079|organism=Clytia hemisphaerica|type=transcript|length=2820bp
CATTcagattcaaatatttttgttttattattcatcagttttatttttat
tgctCCTTTTAGAATCTTAAAATCACCAGATAATTTCTTGAACGAGAGTG
TTCCTTCGAAGTCAGTGTAAGTAAAAGAAGGATAAGAATTTGTTTTAAGC
ACACAGCACAGCATAGCATAGCACAGCACAGCACAGTACTTGAATTTCAT
CGATTTTACTCATAAAAAGATACTACTCGAACAAAAGAAATTGCACATGA
CATTTTTCTGCATTACAGTACTAAGACCTGCATGATATACTTCAGACAGT
AACAAAATCAGAAAGTCAATATCATTCACGCATACACACTCTTTCACTTT
ATACCTAAACTAACCATTTAAAGACAGCTAACCATCTAACAATGCTCTTT
ACCAAATGCTTCGAAGGTGGGTCTTTtcactttatttatttttttaaccc
aTTTTTTCGATTCTTAACAATATTTCAACTGAATATGAAGGAGTAATGGA
CTCTAGATGATCTACAGTATAATAGCTTATTACTAAGtgaattaattttg
gtgggggttaagtttggcgaatttggcgaattttgatcacattttaaaaa
atccccgccaaaaatcgcatttttgcCAATCGCCATAATGTCTTTATATA
ATGCCAATGATCTCTTATCTAAATCGTGTATTATCCTTTTCATGAACTCT
GAAGATGTGTTTTGTTTAGAAAGATCAAAAGTGTTACACCATCCCCGCGA
AGAAAAGTGACTGAACAGAATAGAGATGGTTTTGACGAGGACGATGATGA
TGACGATTTTGAGGAAGACTATCTCGAGGGAGAAAGCGAAATTGATGTCG
ATGATGAGGATGACGATGATGAGGAATATGAGGAAACAGACGAAGAAGAA
GTCAGTGAAGACCAAGTGCTACACATTGTGCGTGGGTTGACAAATTACAA
TGCTCAGCAAGAAGGAGATCTCACCTTCAAAGTTGGCGATCAAATCGAAA
TCCTAGAAGTCAGtgATGATGGTTGGTGGACTGGTAGAGATTGTCATGGT
AACGAAGGACTCGTCCCCAGTACCCTTGTGGAGATAGTCCATGAAGAACa
accaatcaaacaaaaaaatgtaaaagCAAAACCACCGTTGGAGAAGCAAA
GAAGTGGCAAAGAGTTGTgggaaaatttaaaagattccAAAACAAGCAAG
aCAAGTGTGACAGATGTTTTGAAAGCAATGAAAGCAATCCCTCAAGGCTT
TCGTTCATCCACTCTCGGCAAATGGTATCAAAAAGAAGAGTACCGTTCAT
CTTCCTATGTCATTCCGAAAACAAATTCTTCCAACCTTCAGTACAATGAC
CTGTACTGGGATCCTGTCAACAAAAAGtTACGAGGACAACAGACGTCAAC
TTGCCGAACTATCACGCTTGTGTCTGTCAAGTCTGTTCCTCCTATCGGTG
CTGGGGTCGAAATATTGAGTCGACATGTATATTTCGCCCTATGGGATGGC
GAAAAGATCCTCAGTAATATACACGTTGTGCGGGCTGTACCCTTGGAACG
CGATCTGTCATGGACATTCACACCGAAAGTCGCCAAACACATTCCCAGTC
TCTATGATGGTGAGCTCGTTGCCAGGATCAACTCTGATGATCGAAAAATA
AGTTTGCTGATGGAATTGAACTATTCCTACGTTCGCACGtCAACTGGTGA
AAGAAGTGAGATTTCTTGTGGCTGGGCGTCGCTCAGTTTGTTCGATGAGA
GCGGTGCACCTGTTGGAAATAAGAACCACGATTTGATAATTAATGGAGGA
ACTCCTTTCGAGAAGGGTGTCCCGTTGGACCCAACACTTGGTGCCAACAC
CAATGTTTCACTAATGCAATCAATTTTACGTTCCAATCGGCAACCAAAAA
TAACGGTCAAAACTACCACATTTAACAAAATGACTAAAGATATTTACGAC
ATGCTTCCGGAGAGGTTTGTCACGTGTCAAAGATACGCTCGTTTCATTGG
CTACTTTCGGCAACACGCTGCAACCGTCTTTTGTAAAGACGACCTGATAG
AAAGAGGTACAGTGTTTGACACTTTGTTGGCACAATTCCCAAGAGCTTTG
GATTATCACGACCTAATGGATGCTCTCATGATGACCTGGGAAGAAAAAGC
CAAATCCTCCCTCAACAGATCTCAAAGGAGAGATAATGCACACGTACAAT
CAGTGTTCATGCAATGCTTCAATGAAAGTATACTTGGTCTCTTACAATGT
GCTCACCTACCGCCTTTTCACTGGGCAAACGAGACTGCAGAAAAGgCGCG
CTTTGCTTTCATTCTATCTTTCCTTCAAAAGAAGGAATCACTCGGAAATC
TTCTTTCGGCGGAACAGAAGTTCAAACCGATTAACGTCGGGCGAATGGCA
TTCACTAATAATACGACGCATGCGCTCTATCCGCAACCAATCACAAAGGA
GTTGCATTCGCCTTCTTGATTCATGTGTGATGTGAGAACATGGCTACCTA
CTGATCGCTCATTTTTGCATAGGAGTTCCCTCTCTCTATGCACATACATA
GTATACAGTGGGTAATTAAACNCTACCCACTGATCGCTCATTTTTGCATA
GTACAGTGGGTAATTAAGCTTTAGAGTTTACTATTTTGTTTTACTACAGT
AGAGAGTAGTGAAATCTTACATTTTATACGAGAACCCACGATCCAATTTT
TATTTGTCTGTATGATACAtattatttattgcaaattttaaaCGTTATTT
ATTGAAAGTTTTGTATATTTGTAGATAGCAACAGgaaagaaacattttaa
aagattGAGTACATAATTAA

Run BLAST on NCBI

transcript from alignment at sc0000724:51825..62439+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00029079 ID=TCONS_00029079|Name=TCONS_00029079|organism=Clytia hemisphaerica|type=transcript|length=10615bp|location=Sequence derived from alignment at sc0000724:51825..62439+ (Clytia hemisphaerica)
CATTcagattcaaatatttttgttttattattcatcagttttatttttat
tgctCCTTTTAGAATCTTAAAATCACCAGATAATTTCTTGAACGAGAGTG
TTCCTTCGAAGTCAGTGTAAGTAAAAGAAGGATAAGAATTTGTTTTAAGC
ACACAGCACAGCATAGCATAGCACAGCACAGCACAGTACTTGAATTTCAT
CGATTTTACTCATAAAAAGATACTACTCGAACAAAAGAAATTGCACATGA
CATTTTTCTGCATTACAGTACTAAGACCTGCATGATATACTTCAGACAGT
AACAAAATCAGAAAGTCAATATCATTCACGCATACACACTCTTTCACTTT
ATACCTAAACTAACCATTTAAAGACAGCTAACCATCTAACAATGCTCTTT
ACCAAATGCTTCGAAGGTGGGTCTTTtcactttatttatttttttaaccc
aTTTTTTCGATTCTTAACAATATTTCAACTGAATATGAAGGAGTAATGGA
CTCTAGATGATCTACAGTATAATAGCTTATTACTAAGtgaattaattttg
gtgggggttaagtttggcgaatttggcgaattttgatcacattttaaaaa
atccccgccaaaaatcgcatttttgcCAATCGCCATAATGTCTTTATATA
ATGCCAATGATCTCTTATCTAAATCGTGTATTATCCTTTTCATGAACTCT
GAAGATGTGTTTTGTTTAGAAAGATCAAAAGTGTTACACCATCCCCGCGA
AGAAAAGTGACTGAACAGAATAGAGATGGTTTTGACGAGGACGATGATGA
TGACGATTTTGAGGAAGACTATCTCGAGGGAGAAAGGTATTCACAATAGT
TGCAATAGTTTCTCTTCACGTTTTGCTTGCCTTTGGAGAGTCATCATTGT
TTCTTATTCCCAAAAACGATCATAGAAATGATGCATTCAGTTAAATAAAT
TAGTTACCGAGACGGTTTCACACCATGGTTTATTCTTTTAACAGCGAAAT
TGATGTCGATGATGAGGATGACGATGATGAGGAATATGAGGAAACAGACG
AAGAAGAAGTCAGTGAAGACCAAGTGGTATGAACTCTTCTTACACATAAC
ATCCAAACGATCACCTCGTTAAACATAATTGTAAGAGCATAAGCTGTTAG
CTGTGCAGAAAAAACAATTTCCTCGAAAATTCCCCAATTCATTTATTGAT
CTATTGATCAGGGTACCATTTAAAAACAGTTCCCATCGAAAGTTTAGGTT
GCCCGGGAAAGCTCAGTGATTGTTATTGTAGAGGCTtatctcaattaaaa
aaattcgaatctGAATTTTGGTATAATAAACAGTATCTATTCGGATTCTT
CTCTTTCAATAGTTTTGACTGTTTAAAATTTGTCACAACTTGTTCACTGC
GATTTCAGCCTTACTTCAAAATGCCAtagcttttatatttttcaatgaaa
agttCCCAATTTTTCTCAGCTACACATTGTGCGTGGGTTGACAAATTACA
ATGCTCAGCAAGAAGGAGATCTCACCTTCAAAGTTGGCGATCAAATCGAA
ATCCTAGAAGTCAGGTAAATAAAATCGTTTAAATCATTAGTGTGTAGAGT
TGTCTGAACTCTTCCCGTTCGTATTTCTCCCCATATATATTATTGGTGGC
TTACAAACAGTTTACAAGCGTTCCAAGGAAAAAACACTTAGGGATAGATC
CACGCAATGTGAGCTCTTGTATTATTAGATTTCTTTGTTGTAGGAAATCT
TTAAGTCGGGTTAAAATTCAAAGCATGCATCTAGCATTAGACATATCTAG
CACATCAATTCTTGTGTAAAGGCTCCAATCCGTTTTAAGACCTTGAtacg
atttttttcataaaacggACATAAATTACaagtaaatcaatttttttaac
tCACTCATAGGCGGTGTTTTATAGTTTGATTTTACACAAAGTGTAtttta
ttgtgttttttttaattcagtgATGATGGTTGGTGGACTGGTAGAGATTG
TCATGGTAACGAAGGACTCGTCCCCAGTACCCTTGTGGAGGTTAGTGTTC
AACGTCTTTAACTAGTCGGATCTTATATGCAAAATCTGTTTGTGCATTAG
CGCGAAAATATGTCCACGCAAAATTTCCAATTGTACAAATATAGTTGAAA
TGCGATCCATGCAATTGTTCTTCCCCATTTTCAACCTTTATTTTCCTTCT
TTGGACAATCcttattctttaaaaaagtaaaatatgcCGATAAGTAACGA
ATATATTACCAATATTTCTGATTTCGAAATCGCTAAATTTAATATGAAAG
ACCTATTTTGCGAAAACAAATCCACGCCAATTTTTAGAATAGGTCAATCT
GCCGAAAAAAGTCCTCGCGAAAATTCATCCACTTCAGCTTAGATTTGAag
agaaaacttttgttttgagttccttgacacttttaataaaaaactGTAAT
TTGTGAATTTATTCTATCTAGAGTAAATTAGTAAttgaattacaaaaatg
acgttatgaactttgaAAAGACgtaaattaaatttgatattactgcctct
ttcaaaaaagtgctaagttttaaaggataattaatatttttgtttggaaa
ttttttaattgtCTGCAAAAGATTAAACAATCTAAAAAtgttcggaaaat
ttttctgaacTGATTTATCATGTgacttttttttccaaaaaccattattt
tcaagattttgtgataaagaagcttttacaaaatttcttcgAAAACCCAT
TATTAATTTGACAAAAGATGCACCATCTAATGCGacagtttttcaaaatg
ttttttcttcgccgataTCGCAACAATATCGCAAATATTGttctcaacca
atcaaaatggtTATTTTTTTGGGGTCggaaaaaaaacgacaaatgtGAAA
AGTTCACTatagtcagagcccttaaggtaaTGCGAGTGCTGAGTAATTGC
TAACGCCAGTTTTAATAGTACTTCTTGCATTTTCACCAACAGATAGTCCA
TGAAGAACaaccaatcaaacaaaaaaatgtaaaaggtATTCCATAATAAG
CtttatttttactttcattGTCTTTTGACATGCGGTCTATGCCAGCTTTA
AGAAAATTTCTAGTCATGACAATAATCACTTTCGAAAGCTAATTCTTCCT
CGGTCTTTAGTGAGCAAGCGATTGagaaatataaagaaattttgGTCTTA
ATCTTCATTAGCAAAACCACCGTTGGAGAAGCAAAGAAGGTATGTTTTAA
TTCTCGTTTTTTGACACAATTATATGTTGAAGGGTTAGTAACCCGTACTA
CCCTTAGTCTTACTGCATTTAAATATTCCAAAGTTATCGCATTCTTCACA
AAAGTGATAATAGAATAATCATTTGATTGCGAAGTAACATTTCTAACGAA
AATGTCATTTTGCTTATCATAAACGGGTATCTTTGGaaccaaaaaaataa
tgaagacTTGAAGCAGCTCTGCCAGTTATGTTTGATAAAATGCCTTATCG
GTGAGAAAAGTCGGAGACAGATACATAACCCTAGAAAATGTGCATCTTCT
CTCCTTTTAGTGGCAAAGAGTTGTgggaaaatttaaaagattccAAAACA
AGCAAGGTATGgatttcttctatttcttctaaAAGAGTTTTCAAACTCTT
CCCGATTTTAAACAAATACAAGAAAGattcaattttgaaatataatatca
gattttattattttgtatcatttctcGCACCttcatgaaattttcattaC
GAGAAGTGTAGAAGCTTTTAATCGtgtcgttaattttttattagaTAAGA
TAAAAGACAGATATTGATCAACATGTTTCAACTTTGTCTTTGTAAATCAA
ATGAAATGGAAATATCTTACAGTACAAAAATCTTCGCGAGTTTGAAGGAG
TGAAAGCTAATTCTATCAAAACATTAAATTCTcgcttttctcattttttg
gaaatttctctcgtcttttctagaaaattaaaaggaagaaaaagaagaat
aaagaTATTCAGAATGAAGCCAGTTGTACCATCTTGGATAGTAGCACGAA
ACTTCTTCATTTGTTAGAAGGGACAGCTTACGTAATGTTTGATCAGATTT
GTTACAAAGATTTTAGTGTAGTTTAATTTAAGTCTTGTCGTTCACCGTCC
AAAGTCGAGGTTTACTTTACTATGAATTGTGGCCTTTTTAACAATGAATT
ATAGtactttcgatttttttccagatTAGATATATAACCAGTTGACGCAG
TTGTGTGGTCGCTTGCATTCTTGACTCTAATGTGGGAAGCTCGAGCTTGC
TACTCACGATGGTAAACGCTAatatatttatttcttttctattttcagaC
AAGTGTGACAGATGTTTTGAAAGCAATGAAAGCAATCCCTCAAGGCTTTC
GTTCATCCACTCTCGGCAAATGGTATCAAAAAGGTGAACCACCTTTACAT
TTTGTGAACATTcagttaccttaagggaacttcgTGGGCTAGACAGTAAT
TTCCTTAATTTTAACGAAAACCAATTTTGGTGGATGGCAGGGTACATTGG
TTCCTTTTTTTTGCCTAGAAATGTGTGCTTTAAACAAATATTAAGGGCTA
CTCcagaaaaaaacatgaaaaggtTTAATTTTAGAGGAACTTATTTTGTC
GaggcaacaattttttttttaatttgatataaACTAGCTCTTGCCAAAAT
tcgttcccttaaggtaatatgGTAATGTCAAAGAGgtggttttcattttt
cagattcatTTTTGGACCCTCCCCCCTCCGTACtccaagaaatttcaaaa
ttgaattcAGAATTTGTCTGGTTTTCATGCATTGCGTTATTTGTTACCTT
CTGGCCTTTTTAAGAGAGAATCATTGCTACTTTTAAGTCACGTGACATCG
AACTCAATCCTCTGTTTTCCTCTCAGAAGAGTACCGTTCATCTTCCTATG
TCATTCCGAAAACAAATTCTTCCAACCTTCAGTACAATGACCTGTACTGG
GATCCTGTCAACAAAAAGGTGAATTCATTTTTCaaaggaataaattaatg
cgagaaTAAATTAATGTGGAATTAAAATCAATGCGAATTTGGcccttttt
tgcaaaatttaaatCCGCAAAACTTTCGGTCGTTTGCATTATAAGTTCTG
CATTTTTTTCCTAAACTGTTGCTGGTTTGGAGGTGTAAACCATAAATATT
CATTTTCTGGACTCCAGGGCATAAATTAGACTTGTATTCCGATAATTGAC
ataattaatttaatttcatttcatttattaATATTTAAAGAGGAGCATAC
ATcagttaaataaataaaaatttacaactgCTATCAACGTCACTCCTCTC
ACCCAAATCGTACACTCGCTTCACATCACACCTCAAGACACACACTCAAG
ATAAAAATTAGATAATGACATAAATActaaaaataaatactattataaat
tgataaaatctaaaatctaatGTTTTCGAATGATAGGGAAGAAATCAGAA
ACATTTTTTAGGTTTGCATGACGAGAATGAAGACGTTAcgatgaaaatga
ataaaataattttaaaacgcgTTTTATTTGTATTTCGTTGGAAAGTTTTT
AGTTCGTTCTGTTtcttgaaaaggaaaaaatcatttgaaacgctatttcg
cattaattaatttcgcattaatttattctgcattaatttattcttgCATT
AATTCAttcccttaagggtaggttttttcgCTAACACTGGTGAATATTTG
TCGTGGATGAAGCCTTCCAGACTTATTCTCGCGGATGGCaccaaaatccg
cgaaatctaATCCCTGTGAAAACTTATCCCATCAAAGTACTCCTCGACTG
TCTAGAAAACCCGATCGAAACCCGATCCCGAAATGTGGACGATTTTGATA
AGTTAATAATGAAATAtgtatctgatatgaaacagggacacttaagtaaa
aataaagcctttaaataaaaataatactataattttaagttttggtttga
tttcagtTACGAGGACAACAGACGTCAACTTGCCGAACTATCACGCTTGT
GTCTGTCAAGTCTGTTCCTCCTATCGGTGCTGGTATGTTTGCTGTAATAT
CTTCAGAGTTTTCCTACTCCCtgttataacattttttggccttttaaTCT
AGCTCCATTAACCTAGCAGTGGTAAATGAATTTGGTACGTACCCTTCTTG
GAACGCTTAGTGTTTTGAACTATACAcatctttttataagcaactcgaTT
TTTAGCTTCAGGTAGCTTAGCTTTCTAGCTCAATTTCTGAGCAATTTTGT
ATAGCCACCCTAATATTATAGCATGTTTATGCTTATTtggtcaagggcta
tcgtttgccgTTATTAGATTTCAAAGCTTTTTCTTTAtgaatcattaaaa
aatgtGTGTTTGAGTTTTAGCAACATGGTTCGTTGTTTATGAATCCTATT
TAATGCACTCtctttaaacattaaaaaaaaaacaattaaaaaaagttatt
tttcatgTTTAAGGGGTCGAAATATTGAGTCGACATGTATATTTCGCCCT
ATGGGATGGCGAAAAGGTAAGTAAGATACATCTTCCTAGTTCTGAATAAA
GAAGATGAGTGGCTTTCAAGAGTGCTACTTCCAGGTTCTTTTCTCTTCTC
TGGAGTTGACTTCCTGAACCTCTGCTAATCAATTGCGTGTATACTTTAGG
TAAAAAGAATGCTCAATATACTTTTCTTATCCACCCACTTTGCCATTTTT
TTCAGATCCTCAGTAATATACACGTTGTGCGGGCTGTACCCTTGGAACGC
GATCTGTCATGGACATTCACACCGAAAGTCGCCAAACACATTCCCAGTCT
CTATGATGGTGAGCTCGTTGCCAGGATCAACTCTGATGATCGAAAAATAA
GTAAGTCGAAATTCATGGAGTGTTTAAGGTCCCGAAATTAGATGTGGAGT
TTTCACAATTAGAATCAAATATGATATGAGGTGCAATGATGTTTGATTAT
CATTGCTGTTGTATAAAAATCTCATACAATGAAAACATGCATCCCTGTCT
TACCTTACTTTTCACCCTTGTCTCGTTTCTTTATCTTCACAGGTTTGCTG
ATGGAATTGAACTATTCCTACGTTCGCACGGTAAATATATAGTGGATAAT
AAGTAAGGGAGTGGcatgtttttttctggaaagttGGTCTTCAATCTTCA
AGCTCGTTAGCATCGTCAAACTACTTTTAATGTTAAACTTATCTAGCGTA
CGCAATTTGAACTGAGTGACAtcacaaaaaaggaaaaatgagCTATGCTA
AGGAAAGAGTAATTGGATGGATGAGCCCGAGGAGAGCATTGAAATCTTCG
CGGAACGTAAATTTTGGAAAGGAAGTCTCTAACTTTATTCTTcgaaactt
ttcaatttcagtCAACTGGTGAAAGAAGTGAGATTTCTTGTGGCTGGGCG
TCGCTCAGTTTGTTCGATGAGAGCGGTGCACCTGTTGGAAATAAGTGAGT
CATCGGCCATCTCTTCTTCTTAATAAGTGTTTCAACTTTCCCGTCTGTTG
GCGATAATCCGTCAATGGATATTTTTCACCGAGACCAAATGTCGTTACAT
GGACTTTAAAACTGCTTTGACAAAACTGAATTTTGTACAATTCCTTCCGC
TCAGACCAGGCCAATCTcgcacttatttctaccatatgtgtagatatgta
agaatcgtaaatctaccatatgtgtagatattagaatccgtaaatctact
atatgtgtagatattgtaaatctaccatatgtgtagatattagaatccgt
aaatctactatatgtgtagatattgtaaatctaccatatgtgtagatatg
taaaaatcCATAAATCTACCATAAGTAGTTAAGGTATAAATACTATCCAG
ACAATCtaaaaagaatgacaaataactattaaaaagcaacaaaaagaacg
acaaaccttaaccctaactatcaaagaacgacatatttcaaaccctaacc
ctaactatcaaagaacgaactatcaaagaacgacatatttcNaactatta
aaaagcgacaaaaagaacgacaaaccttaaccctaactatcaaagaacga
catatttcaaaccctaaccctaactatcaaagaacgaactatcaaagaac
gacatatttcaaaccctaaccctaactatcaaagaacgaactatcaaaga
acgacatatttcaaaccctaaccctaaccctaactatcaaagaacgaaac
GACATAACAAAAAAGTTTACCCAATGAAATTATATTAACTCCTATGACCA
TTAATGTATACTTGAATTTGTTGTTTCCTTGTAGCTCTTATGCTATGGCT
ATTAActaattttttgataaacactGATATTGAAgccttttcaaacaatt
tttttcttcaaatttaagGAACCACGATTTGATAATTAATGGAGGAACTC
CTTTCGAGAAGGGTGTCCCGTTGGACCCAACACTTGGTGCCAACAGTAAG
AATTACTTTCTTACTTTCACAATGTTTTGTGTGCTCCTTTACTCATGTAC
GCTAAACTATTTTGATAAGACTTTGATGATGCTTTTCGTTCCAGCCAATG
TTTCACTAATGCAATCAATTTTACGTTCCAATCGGCAACCAAAAATAACG
GTCAAAACTACCACATTTAACAAAATGACTAAAGATATTTACGAGTAAGA
ATTGTTCCATAagacttatttatttttttttgtaattctatATTTGTTTT
CGTTCGACGCCAATGACTAAACTCCCCCTGAAATTTTTAAAGTGTCCACT
ATTTTTTCACATAATCTCTGTCTTTAAGTATATAAAAATGAACCAGAAGA
ATCTATCAAAGACCATCACGGCATAGATGAATAAAGTAATTAAACGCTTT
GTGCGAACCACTTTTTAGCATGCTTCCGGAGAGGTTTGTCACGTGTCAAA
GATACGCTCGTTTCATTGGCTACTTTCGGCAACACGCTGCAACCGTCTTT
TGTAAAGACGACCTGATAGAAAGAGGTATCGCATATTTGAACTATTTACT
ACAGCatatggcccccaaaatgtAGGTGTCTCCCAATATGTAGGTTTTGA
TTCAAATGAGAATTCTAACCTGTAGATTACTCCTAATGAGATGTTTATTT
TGGCAGTTTGGAACATGTGGAAAACAAATTATCTTTTCTCGAGGATTTGA
CAGTTTTCAAACTGAACCGATATTTTGAGCGCCTCAAACAAAAAACTTGC
TCGTTTTAGGTACAGTGTTTGACACTTTGTTGGCACAATTCCCAAGAGCT
TTGGATTATCACGACCTAATGGATGCTCTCATGATGACCTGGGAAGAAAA
AGCCAAATCCTCCCTCAACAGATCTCAAAGGGTAAATTATTACACTCAAC
TTTCACCATTTCACAAAGATATTTGAAAGCAACATTCATGGTGGCTATAA
TTATTTAAAGAGAGGTTTTTAAATAATTAACATTTGACTTGTTCGAAAGA
AGTATGTATTTCGGAGACTTTCTGAGAGTGGGTACGCGAATTGAACTCGG
TGAATTCATCACCTTGAGGGAAAATTGTACAATACAAAAGGTCCGTTCAT
TCTTCTGTCAAGTTATGTTAGGGATTATAGAAAGTTGTAAGGCGCAGAGT
GTTGGTTGTGCTAATAATTTTGTGTTGAATTTTAGAGAGATAATGCACAC
GTACAATCAGTGTTCATGCAATGCTTCAATGAAAGTATACTTGGTCTCTT
ACAATGTGCTCACCTACCGCCTTTTCACTGGGCAAACGAGACTGCAGAAA
AGGTACGTACACGTTATCGTAACTCCAGtcataaagaaaatattaagtGG
TAAATAGCAAAGACATAGCATTACAACTTGGGTCTCTATTCACATACTTT
AATGTCAAGAAATATCGCGAGTGTGGCCATTCGCGAAGTTTGGTATTTCG
GGGGATTTAATTTCTGGCCTCGAAAATTTCTGTCATTAAAGTAGATTTTT
TGATAGTCCAATTGTATgtacaaatcaaacaaaaaccctTGCTAAGGTGA
CTTCTCAACATGAAAccatcgattttttttcttttcataggCGCGCTTTG
CTTTCATTCTATCTTTCCTTCAAAAGAAGGAATCACTCGGAAATCTTCTT
TCGGCGGAACAGAAGTTCAAACCGATTAACGTCGGGCGAATGGCATTCAC
TAATAATACGACGCATGCGCTCTATCCGCAACCAATCACAAAGGAGTTGC
ATTCGCCTTCTTGATTCATGTGTGATGTGAGAACATGGCTACCTACTGAT
CGCTCATTTTTGCATAGGAGTTCCCTCTCTCTATGCACATACATAGTATA
CAGTGGGTAATTAAACNCTACCCACTGATCGCTCATTTTTGCATAGTACA
GTGGGTAATTAAGCTTTAGAGTTTACTATTTTGTTTTACTACAGTAGAGA
GTAGTGAAATCTTACATTTTATACGAGAACCCACGATCCAATTTTTATTT
GTCTGTATGATACAtattatttattgcaaattttaaaCGTTATTTATTGA
AAGTTTTGTATATTTGTAGATAGCAACAGgaaagaaacattttaaaagat
tGAGTACATAATTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_016541	XLOC_016541	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000724	supercontig	sc0000724:51825..62439 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.384235	0.6464	0.567767	0.851259	1.79163	0.864507	2.12133	2.1582	1.65321	1.73794	2.66706	1.30712	3.97244	2.88905	3.57379	3.78132	2.3159	3.35994	0.560651	0.88287	3.09584	2.76725	1.13199	1.20159	1.26503	1.93875	6.00479	5.48494	0	0.289671

Blast

[Close]

BLAST of TCONS_00029079 vs. Swiss-Prot (Human)
Match: NPHP1 (Nephrocystin-1 OS=Homo sapiens GN=NPHP1 PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 4.175e-86
Identity = 150/410 (36.59%), Postives = 238/410 (58.05%), Query Frame = 1

Query: 1198 KTSVTDVLKAMKAIPQGFRSSTLGKWYQK-EEYRSSSYVIPKTNSSNLQYNDLYWDPVNKKLRGQQTSTCRTITLVSVKSVPPIGAGVEILSRHVYFALWDGEKILSNIHVVRAV-PLERDLSWTFTPKVAKHIPSLYDGELVARINSDDRKISLLMELNYSYVRTSTGERSEISCGWASLSLFDESGAPVGNKNHDLIINGGTPFEKGVPLDPTLGANTNVSLMQSILRSNRQPKITVKTTTFNKMTKDIYDMLPERFVTCQRYARFIGYFRQHAATVFCKDDLIERGT--VFDTLLAQFPRALDYHDLMDALMMTWEEKAKSSLNRSQRRDNAHVQSVFMQCFNESILGLLQCAHLPPFHWANETAEKARFAFILSFLQKKE----SLGNLLSAEQKFKPINVGRMAF 2403
            + +  DVL  M AIP GFR STL +  ++  ++R++ ++ P+   S L + DL WD     +R + +     +TL S K +P  G  +++LSRHV   L+DG K+LSNIH VRA    ++  +WTF+P+V + +P L DG+   R NS    + +L EL  SY+R STGER E+SCGW  L LFD SG P+  K ++L +NGGTP+EKG+ +DP++    + S+   I+   RQP++ VK  + N+ ++++  +LPE  +        + ++RQ    V  KD +  + T  +   +LA FP  L+  D+MDAL  +W  K +S+L RS++RD   ++S F+  +++ +L LL    LPPF WA E  E AR+  I  FL++ +    +L  LLS +   +P ++    +
Sbjct:  313 QINTVDVLTTMGAIPAGFRPSTLSQLLEEGNQFRANYFLQPELMPSQLAFRDLMWDATEGTIRSRPSRISLILTLWSCKMIPLPGMSIQVLSRHVRLCLFDGNKVLSNIHTVRATWQPKKPKTWTFSPQVTRILPCLLDGDCFIRSNSASPDLGILFELGISYIRNSTGERGELSCGWVFLKLFDASGVPIPAKTYELFLNGGTPYEKGIEVDPSISRRAHGSVFYQIMTMRRQPQLLVKLRSLNRRSRNVLSLLPETLIGNMCSIHLLIFYRQILGDVLLKDRMSLQSTDLISHPMLATFPMLLEQPDVMDALRSSWAGK-ESTLKRSEKRDKEFLKSTFLLVYHDCVLPLLHSTRLPPFRWAEEETETARWKVITDFLKQNQENQGALQALLSPDGVHEPFDLSEQTY 721

The following BLAST results are available for this feature:

BLAST of TCONS_00029079 vs. Swiss-Prot (Human)

BLAST of TCONS_00029079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NPHP1	4.175e-86	36.59	Nephrocystin-1 OS=Homo sapiens GN=NPHP1 PE=1 SV=1	[more]

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TCONS_00029079 (transcript) - C. hemisphaerica