TCONS_00029078 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00029078
Unique Name	TCONS_00029078
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2543

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000724:51799..62439+

transcript sequence

>TCONS_00029078 ID=TCONS_00029078|Name=TCONS_00029078|organism=Clytia hemisphaerica|type=transcript|length=2543bp
ttggcacctaagagtatgaTTTTCATCATTcagattcaaatatttttgtt
ttattattcatcagttttatttttattgctCCTTTTAGAATCTTAAAATC
ACCAGATAATTTCTTGAACGAGAGTGTTCCTTCGAAGTCAGTGTAAGTAA
AAGAAGGATAAGAATTTGTTTTAAGCACACAGCACAGCATAGCATAGCAC
AGCACAGCACAGTACTTGAATTTCATCGATTTTACTCATAAAAAGATACT
ACTCGAACAAAAGAAATTGCACATGACATTTTTCTGCATTACAGTACTAA
GACCTGCATGATATACTTCAGACAGTAACAAAATCAGAAAGTCAATATCA
TTCACGCATACACACTCTTTCACTTTATACCTAAACTAACCATTTAAAGA
CAGCTAACCATCTAACAATGCTCTTTACCAAATGCTTCGAAGAAAGATCA
AAAGTGTTACACCATCCCCGCGAAGAAAAGTGACTGAACAGAATAGAGAT
GGTTTTGACGAGGACGATGATGATGACGATTTTGAGGAAGACTATCTCGA
GGGAGAAAGCGAAATTGATGTCGATGATGAGGATGACGATGATGAGGAAT
ATGAGGAAACAGACGAAGAAGAAGTCAGTGAAGACCAAGTGCTACACATT
GTGCGTGGGTTGACAAATTACAATGCTCAGCAAGAAGGAGATCTCACCTT
CAAAGTTGGCGATCAAATCGAAATCCTAGAAGTCAGtgATGATGGTTGGT
GGACTGGTAGAGATTGTCATGGTAACGAAGGACTCGTCCCCAGTACCCTT
GTGGAGATAGTCCATGAAGAACaaccaatcaaacaaaaaaatgtaaaagC
AAAACCACCGTTGGAGAAGCAAAGAAGTGGCAAAGAGTTGTgggaaaatt
taaaagattccAAAACAAGCAAGaCAAGTGTGACAGATGTTTTGAAAGCA
ATGAAAGCAATCCCTCAAGGCTTTCGTTCATCCACTCTCGGCAAATGGTA
TCAAAAAGAAGAGTACCGTTCATCTTCCTATGTCATTCCGAAAACAAATT
CTTCCAACCTTCAGTACAATGACCTGTACTGGGATCCTGTCAACAAAAAG
tTACGAGGACAACAGACGTCAACTTGCCGAACTATCACGCTTGTGTCTGT
CAAGTCTGTTCCTCCTATCGGTGCTGGGGTCGAAATATTGAGTCGACATG
TATATTTCGCCCTATGGGATGGCGAAAAGATCCTCAGTAATATACACGTT
GTGCGGGCTGTACCCTTGGAACGCGATCTGTCATGGACATTCACACCGAA
AGTCGCCAAACACATTCCCAGTCTCTATGATGGTGAGCTCGTTGCCAGGA
TCAACTCTGATGATCGAAAAATAAGTTTGCTGATGGAATTGAACTATTCC
TACGTTCGCACGtCAACTGGTGAAAGAAGTGAGATTTCTTGTGGCTGGGC
GTCGCTCAGTTTGTTCGATGAGAGCGGTGCACCTGTTGGAAATAAGAACC
ACGATTTGATAATTAATGGAGGAACTCCTTTCGAGAAGGGTGTCCCGTTG
GACCCAACACTTGGTGCCAACACCAATGTTTCACTAATGCAATCAATTTT
ACGTTCCAATCGGCAACCAAAAATAACGGTCAAAACTACCACATTTAACA
AAATGACTAAAGATATTTACGACATGCTTCCGGAGAGGTTTGTCACGTGT
CAAAGATACGCTCGTTTCATTGGCTACTTTCGGCAACACGCTGCAACCGT
CTTTTGTAAAGACGACCTGATAGAAAGAGGTACAGTGTTTGACACTTTGT
TGGCACAATTCCCAAGAGCTTTGGATTATCACGACCTAATGGATGCTCTC
ATGATGACCTGGGAAGAAAAAGCCAAATCCTCCCTCAACAGATCTCAAAG
GAGAGATAATGCACACGTACAATCAGTGTTCATGCAATGCTTCAATGAAA
GTATACTTGGTCTCTTACAATGTGCTCACCTACCGCCTTTTCACTGGGCA
AACGAGACTGCAGAAAAGgCGCGCTTTGCTTTCATTCTATCTTTCCTTCA
AAAGAAGGAATCACTCGGAAATCTTCTTTCGGCGGAACAGAAGTTCAAAC
CGATTAACGTCGGGCGAATGGCATTCACTAATAATACGACGCATGCGCTC
TATCCGCAACCAATCACAAAGGAGTTGCATTCGCCTTCTTGATTCATGTG
TGATGTGAGAACATGGCTACCTACTGATCGCTCATTTTTGCATAGGAGTT
CCCTCTCTCTATGCACATACATAGTATACAGTGGGTAATTAAACNCTACC
CACTGATCGCTCATTTTTGCATAGTACAGTGGGTAATTAAGCTTTAGAGT
TTACTATTTTGTTTTACTACAGTAGAGAGTAGTGAAATCTTACATTTTAT
ACGAGAACCCACGATCCAATTTTTATTTGTCTGTATGATACAtattattt
attgcaaattttaaaCGTTATTTATTGAAAGTTTTGTATATTTGTAGATA
GCAACAGgaaagaaacattttaaaagattGAGTACATAATTAA

Run BLAST on NCBI

transcript from alignment at sc0000724:51799..62439+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00029078 ID=TCONS_00029078|Name=TCONS_00029078|organism=Clytia hemisphaerica|type=transcript|length=10641bp|location=Sequence derived from alignment at sc0000724:51799..62439+ (Clytia hemisphaerica)
ttggcacctaagagtatgaTTTTCATCATTcagattcaaatatttttgtt
ttattattcatcagttttatttttattgctCCTTTTAGAATCTTAAAATC
ACCAGATAATTTCTTGAACGAGAGTGTTCCTTCGAAGTCAGTGTAAGTAA
AAGAAGGATAAGAATTTGTTTTAAGCACACAGCACAGCATAGCATAGCAC
AGCACAGCACAGTACTTGAATTTCATCGATTTTACTCATAAAAAGATACT
ACTCGAACAAAAGAAATTGCACATGACATTTTTCTGCATTACAGTACTAA
GACCTGCATGATATACTTCAGACAGTAACAAAATCAGAAAGTCAATATCA
TTCACGCATACACACTCTTTCACTTTATACCTAAACTAACCATTTAAAGA
CAGCTAACCATCTAACAATGCTCTTTACCAAATGCTTCGAAGGTGGGTCT
TTtcactttatttatttttttaacccaTTTTTTCGATTCTTAACAATATT
TCAACTGAATATGAAGGAGTAATGGACTCTAGATGATCTACAGTATAATA
GCTTATTACTAAGtgaattaattttggtgggggttaagtttggcgaattt
ggcgaattttgatcacattttaaaaaatccccgccaaaaatcgcattttt
gcCAATCGCCATAATGTCTTTATATAATGCCAATGATCTCTTATCTAAAT
CGTGTATTATCCTTTTCATGAACTCTGAAGATGTGTTTTGTTTAGAAAGA
TCAAAAGTGTTACACCATCCCCGCGAAGAAAAGTGACTGAACAGAATAGA
GATGGTTTTGACGAGGACGATGATGATGACGATTTTGAGGAAGACTATCT
CGAGGGAGAAAGGTATTCACAATAGTTGCAATAGTTTCTCTTCACGTTTT
GCTTGCCTTTGGAGAGTCATCATTGTTTCTTATTCCCAAAAACGATCATA
GAAATGATGCATTCAGTTAAATAAATTAGTTACCGAGACGGTTTCACACC
ATGGTTTATTCTTTTAACAGCGAAATTGATGTCGATGATGAGGATGACGA
TGATGAGGAATATGAGGAAACAGACGAAGAAGAAGTCAGTGAAGACCAAG
TGGTATGAACTCTTCTTACACATAACATCCAAACGATCACCTCGTTAAAC
ATAATTGTAAGAGCATAAGCTGTTAGCTGTGCAGAAAAAACAATTTCCTC
GAAAATTCCCCAATTCATTTATTGATCTATTGATCAGGGTACCATTTAAA
AACAGTTCCCATCGAAAGTTTAGGTTGCCCGGGAAAGCTCAGTGATTGTT
ATTGTAGAGGCTtatctcaattaaaaaaattcgaatctGAATTTTGGTAT
AATAAACAGTATCTATTCGGATTCTTCTCTTTCAATAGTTTTGACTGTTT
AAAATTTGTCACAACTTGTTCACTGCGATTTCAGCCTTACTTCAAAATGC
CAtagcttttatatttttcaatgaaaagttCCCAATTTTTCTCAGCTACA
CATTGTGCGTGGGTTGACAAATTACAATGCTCAGCAAGAAGGAGATCTCA
CCTTCAAAGTTGGCGATCAAATCGAAATCCTAGAAGTCAGGTAAATAAAA
TCGTTTAAATCATTAGTGTGTAGAGTTGTCTGAACTCTTCCCGTTCGTAT
TTCTCCCCATATATATTATTGGTGGCTTACAAACAGTTTACAAGCGTTCC
AAGGAAAAAACACTTAGGGATAGATCCACGCAATGTGAGCTCTTGTATTA
TTAGATTTCTTTGTTGTAGGAAATCTTTAAGTCGGGTTAAAATTCAAAGC
ATGCATCTAGCATTAGACATATCTAGCACATCAATTCTTGTGTAAAGGCT
CCAATCCGTTTTAAGACCTTGAtacgatttttttcataaaacggACATAA
ATTACaagtaaatcaatttttttaactCACTCATAGGCGGTGTTTTATAG
TTTGATTTTACACAAAGTGTAttttattgtgttttttttaattcagtgAT
GATGGTTGGTGGACTGGTAGAGATTGTCATGGTAACGAAGGACTCGTCCC
CAGTACCCTTGTGGAGGTTAGTGTTCAACGTCTTTAACTAGTCGGATCTT
ATATGCAAAATCTGTTTGTGCATTAGCGCGAAAATATGTCCACGCAAAAT
TTCCAATTGTACAAATATAGTTGAAATGCGATCCATGCAATTGTTCTTCC
CCATTTTCAACCTTTATTTTCCTTCTTTGGACAATCcttattctttaaaa
aagtaaaatatgcCGATAAGTAACGAATATATTACCAATATTTCTGATTT
CGAAATCGCTAAATTTAATATGAAAGACCTATTTTGCGAAAACAAATCCA
CGCCAATTTTTAGAATAGGTCAATCTGCCGAAAAAAGTCCTCGCGAAAAT
TCATCCACTTCAGCTTAGATTTGAagagaaaacttttgttttgagttcct
tgacacttttaataaaaaactGTAATTTGTGAATTTATTCTATCTAGAGT
AAATTAGTAAttgaattacaaaaatgacgttatgaactttgaAAAGACgt
aaattaaatttgatattactgcctctttcaaaaaagtgctaagttttaaa
ggataattaatatttttgtttggaaattttttaattgtCTGCAAAAGATT
AAACAATCTAAAAAtgttcggaaaatttttctgaacTGATTTATCATGTg
acttttttttccaaaaaccattattttcaagattttgtgataaagaagct
tttacaaaatttcttcgAAAACCCATTATTAATTTGACAAAAGATGCACC
ATCTAATGCGacagtttttcaaaatgttttttcttcgccgataTCGCAAC
AATATCGCAAATATTGttctcaaccaatcaaaatggtTATTTTTTTGGGG
TCggaaaaaaaacgacaaatgtGAAAAGTTCACTatagtcagagccctta
aggtaaTGCGAGTGCTGAGTAATTGCTAACGCCAGTTTTAATAGTACTTC
TTGCATTTTCACCAACAGATAGTCCATGAAGAACaaccaatcaaacaaaa
aaatgtaaaaggtATTCCATAATAAGCtttatttttactttcattGTCTT
TTGACATGCGGTCTATGCCAGCTTTAAGAAAATTTCTAGTCATGACAATA
ATCACTTTCGAAAGCTAATTCTTCCTCGGTCTTTAGTGAGCAAGCGATTG
agaaatataaagaaattttgGTCTTAATCTTCATTAGCAAAACCACCGTT
GGAGAAGCAAAGAAGGTATGTTTTAATTCTCGTTTTTTGACACAATTATA
TGTTGAAGGGTTAGTAACCCGTACTACCCTTAGTCTTACTGCATTTAAAT
ATTCCAAAGTTATCGCATTCTTCACAAAAGTGATAATAGAATAATCATTT
GATTGCGAAGTAACATTTCTAACGAAAATGTCATTTTGCTTATCATAAAC
GGGTATCTTTGGaaccaaaaaaataatgaagacTTGAAGCAGCTCTGCCA
GTTATGTTTGATAAAATGCCTTATCGGTGAGAAAAGTCGGAGACAGATAC
ATAACCCTAGAAAATGTGCATCTTCTCTCCTTTTAGTGGCAAAGAGTTGT
gggaaaatttaaaagattccAAAACAAGCAAGGTATGgatttcttctatt
tcttctaaAAGAGTTTTCAAACTCTTCCCGATTTTAAACAAATACAAGAA
AGattcaattttgaaatataatatcagattttattattttgtatcatttc
tcGCACCttcatgaaattttcattaCGAGAAGTGTAGAAGCTTTTAATCG
tgtcgttaattttttattagaTAAGATAAAAGACAGATATTGATCAACAT
GTTTCAACTTTGTCTTTGTAAATCAAATGAAATGGAAATATCTTACAGTA
CAAAAATCTTCGCGAGTTTGAAGGAGTGAAAGCTAATTCTATCAAAACAT
TAAATTCTcgcttttctcattttttggaaatttctctcgtcttttctaga
aaattaaaaggaagaaaaagaagaataaagaTATTCAGAATGAAGCCAGT
TGTACCATCTTGGATAGTAGCACGAAACTTCTTCATTTGTTAGAAGGGAC
AGCTTACGTAATGTTTGATCAGATTTGTTACAAAGATTTTAGTGTAGTTT
AATTTAAGTCTTGTCGTTCACCGTCCAAAGTCGAGGTTTACTTTACTATG
AATTGTGGCCTTTTTAACAATGAATTATAGtactttcgatttttttccag
atTAGATATATAACCAGTTGACGCAGTTGTGTGGTCGCTTGCATTCTTGA
CTCTAATGTGGGAAGCTCGAGCTTGCTACTCACGATGGTAAACGCTAata
tatttatttcttttctattttcagaCAAGTGTGACAGATGTTTTGAAAGC
AATGAAAGCAATCCCTCAAGGCTTTCGTTCATCCACTCTCGGCAAATGGT
ATCAAAAAGGTGAACCACCTTTACATTTTGTGAACATTcagttaccttaa
gggaacttcgTGGGCTAGACAGTAATTTCCTTAATTTTAACGAAAACCAA
TTTTGGTGGATGGCAGGGTACATTGGTTCCTTTTTTTTGCCTAGAAATGT
GTGCTTTAAACAAATATTAAGGGCTACTCcagaaaaaaacatgaaaaggt
TTAATTTTAGAGGAACTTATTTTGTCGaggcaacaattttttttttaatt
tgatataaACTAGCTCTTGCCAAAATtcgttcccttaaggtaatatgGTA
ATGTCAAAGAGgtggttttcatttttcagattcatTTTTGGACCCTCCCC
CCTCCGTACtccaagaaatttcaaaattgaattcAGAATTTGTCTGGTTT
TCATGCATTGCGTTATTTGTTACCTTCTGGCCTTTTTAAGAGAGAATCAT
TGCTACTTTTAAGTCACGTGACATCGAACTCAATCCTCTGTTTTCCTCTC
AGAAGAGTACCGTTCATCTTCCTATGTCATTCCGAAAACAAATTCTTCCA
ACCTTCAGTACAATGACCTGTACTGGGATCCTGTCAACAAAAAGGTGAAT
TCATTTTTCaaaggaataaattaatgcgagaaTAAATTAATGTGGAATTA
AAATCAATGCGAATTTGGcccttttttgcaaaatttaaatCCGCAAAACT
TTCGGTCGTTTGCATTATAAGTTCTGCATTTTTTTCCTAAACTGTTGCTG
GTTTGGAGGTGTAAACCATAAATATTCATTTTCTGGACTCCAGGGCATAA
ATTAGACTTGTATTCCGATAATTGACataattaatttaatttcatttcat
ttattaATATTTAAAGAGGAGCATACATcagttaaataaataaaaattta
caactgCTATCAACGTCACTCCTCTCACCCAAATCGTACACTCGCTTCAC
ATCACACCTCAAGACACACACTCAAGATAAAAATTAGATAATGACATAAA
TActaaaaataaatactattataaattgataaaatctaaaatctaatGTT
TTCGAATGATAGGGAAGAAATCAGAAACATTTTTTAGGTTTGCATGACGA
GAATGAAGACGTTAcgatgaaaatgaataaaataattttaaaacgcgTTT
TATTTGTATTTCGTTGGAAAGTTTTTAGTTCGTTCTGTTtcttgaaaagg
aaaaaatcatttgaaacgctatttcgcattaattaatttcgcattaattt
attctgcattaatttattcttgCATTAATTCAttcccttaagggtaggtt
ttttcgCTAACACTGGTGAATATTTGTCGTGGATGAAGCCTTCCAGACTT
ATTCTCGCGGATGGCaccaaaatccgcgaaatctaATCCCTGTGAAAACT
TATCCCATCAAAGTACTCCTCGACTGTCTAGAAAACCCGATCGAAACCCG
ATCCCGAAATGTGGACGATTTTGATAAGTTAATAATGAAATAtgtatctg
atatgaaacagggacacttaagtaaaaataaagcctttaaataaaaataa
tactataattttaagttttggtttgatttcagtTACGAGGACAACAGACG
TCAACTTGCCGAACTATCACGCTTGTGTCTGTCAAGTCTGTTCCTCCTAT
CGGTGCTGGTATGTTTGCTGTAATATCTTCAGAGTTTTCCTACTCCCtgt
tataacattttttggccttttaaTCTAGCTCCATTAACCTAGCAGTGGTA
AATGAATTTGGTACGTACCCTTCTTGGAACGCTTAGTGTTTTGAACTATA
CAcatctttttataagcaactcgaTTTTTAGCTTCAGGTAGCTTAGCTTT
CTAGCTCAATTTCTGAGCAATTTTGTATAGCCACCCTAATATTATAGCAT
GTTTATGCTTATTtggtcaagggctatcgtttgccgTTATTAGATTTCAA
AGCTTTTTCTTTAtgaatcattaaaaaatgtGTGTTTGAGTTTTAGCAAC
ATGGTTCGTTGTTTATGAATCCTATTTAATGCACTCtctttaaacattaa
aaaaaaaacaattaaaaaaagttatttttcatgTTTAAGGGGTCGAAATA
TTGAGTCGACATGTATATTTCGCCCTATGGGATGGCGAAAAGGTAAGTAA
GATACATCTTCCTAGTTCTGAATAAAGAAGATGAGTGGCTTTCAAGAGTG
CTACTTCCAGGTTCTTTTCTCTTCTCTGGAGTTGACTTCCTGAACCTCTG
CTAATCAATTGCGTGTATACTTTAGGTAAAAAGAATGCTCAATATACTTT
TCTTATCCACCCACTTTGCCATTTTTTTCAGATCCTCAGTAATATACACG
TTGTGCGGGCTGTACCCTTGGAACGCGATCTGTCATGGACATTCACACCG
AAAGTCGCCAAACACATTCCCAGTCTCTATGATGGTGAGCTCGTTGCCAG
GATCAACTCTGATGATCGAAAAATAAGTAAGTCGAAATTCATGGAGTGTT
TAAGGTCCCGAAATTAGATGTGGAGTTTTCACAATTAGAATCAAATATGA
TATGAGGTGCAATGATGTTTGATTATCATTGCTGTTGTATAAAAATCTCA
TACAATGAAAACATGCATCCCTGTCTTACCTTACTTTTCACCCTTGTCTC
GTTTCTTTATCTTCACAGGTTTGCTGATGGAATTGAACTATTCCTACGTT
CGCACGGTAAATATATAGTGGATAATAAGTAAGGGAGTGGcatgtttttt
tctggaaagttGGTCTTCAATCTTCAAGCTCGTTAGCATCGTCAAACTAC
TTTTAATGTTAAACTTATCTAGCGTACGCAATTTGAACTGAGTGACAtca
caaaaaaggaaaaatgagCTATGCTAAGGAAAGAGTAATTGGATGGATGA
GCCCGAGGAGAGCATTGAAATCTTCGCGGAACGTAAATTTTGGAAAGGAA
GTCTCTAACTTTATTCTTcgaaacttttcaatttcagtCAACTGGTGAAA
GAAGTGAGATTTCTTGTGGCTGGGCGTCGCTCAGTTTGTTCGATGAGAGC
GGTGCACCTGTTGGAAATAAGTGAGTCATCGGCCATCTCTTCTTCTTAAT
AAGTGTTTCAACTTTCCCGTCTGTTGGCGATAATCCGTCAATGGATATTT
TTCACCGAGACCAAATGTCGTTACATGGACTTTAAAACTGCTTTGACAAA
ACTGAATTTTGTACAATTCCTTCCGCTCAGACCAGGCCAATCTcgcactt
atttctaccatatgtgtagatatgtaagaatcgtaaatctaccatatgtg
tagatattagaatccgtaaatctactatatgtgtagatattgtaaatcta
ccatatgtgtagatattagaatccgtaaatctactatatgtgtagatatt
gtaaatctaccatatgtgtagatatgtaaaaatcCATAAATCTACCATAA
GTAGTTAAGGTATAAATACTATCCAGACAATCtaaaaagaatgacaaata
actattaaaaagcaacaaaaagaacgacaaaccttaaccctaactatcaa
agaacgacatatttcaaaccctaaccctaactatcaaagaacgaactatc
aaagaacgacatatttcNaactattaaaaagcgacaaaaagaacgacaaa
ccttaaccctaactatcaaagaacgacatatttcaaaccctaaccctaac
tatcaaagaacgaactatcaaagaacgacatatttcaaaccctaacccta
actatcaaagaacgaactatcaaagaacgacatatttcaaaccctaaccc
taaccctaactatcaaagaacgaaacGACATAACAAAAAAGTTTACCCAA
TGAAATTATATTAACTCCTATGACCATTAATGTATACTTGAATTTGTTGT
TTCCTTGTAGCTCTTATGCTATGGCTATTAActaattttttgataaacac
tGATATTGAAgccttttcaaacaatttttttcttcaaatttaagGAACCA
CGATTTGATAATTAATGGAGGAACTCCTTTCGAGAAGGGTGTCCCGTTGG
ACCCAACACTTGGTGCCAACAGTAAGAATTACTTTCTTACTTTCACAATG
TTTTGTGTGCTCCTTTACTCATGTACGCTAAACTATTTTGATAAGACTTT
GATGATGCTTTTCGTTCCAGCCAATGTTTCACTAATGCAATCAATTTTAC
GTTCCAATCGGCAACCAAAAATAACGGTCAAAACTACCACATTTAACAAA
ATGACTAAAGATATTTACGAGTAAGAATTGTTCCATAagacttatttatt
tttttttgtaattctatATTTGTTTTCGTTCGACGCCAATGACTAAACTC
CCCCTGAAATTTTTAAAGTGTCCACTATTTTTTCACATAATCTCTGTCTT
TAAGTATATAAAAATGAACCAGAAGAATCTATCAAAGACCATCACGGCAT
AGATGAATAAAGTAATTAAACGCTTTGTGCGAACCACTTTTTAGCATGCT
TCCGGAGAGGTTTGTCACGTGTCAAAGATACGCTCGTTTCATTGGCTACT
TTCGGCAACACGCTGCAACCGTCTTTTGTAAAGACGACCTGATAGAAAGA
GGTATCGCATATTTGAACTATTTACTACAGCatatggcccccaaaatgtA
GGTGTCTCCCAATATGTAGGTTTTGATTCAAATGAGAATTCTAACCTGTA
GATTACTCCTAATGAGATGTTTATTTTGGCAGTTTGGAACATGTGGAAAA
CAAATTATCTTTTCTCGAGGATTTGACAGTTTTCAAACTGAACCGATATT
TTGAGCGCCTCAAACAAAAAACTTGCTCGTTTTAGGTACAGTGTTTGACA
CTTTGTTGGCACAATTCCCAAGAGCTTTGGATTATCACGACCTAATGGAT
GCTCTCATGATGACCTGGGAAGAAAAAGCCAAATCCTCCCTCAACAGATC
TCAAAGGGTAAATTATTACACTCAACTTTCACCATTTCACAAAGATATTT
GAAAGCAACATTCATGGTGGCTATAATTATTTAAAGAGAGGTTTTTAAAT
AATTAACATTTGACTTGTTCGAAAGAAGTATGTATTTCGGAGACTTTCTG
AGAGTGGGTACGCGAATTGAACTCGGTGAATTCATCACCTTGAGGGAAAA
TTGTACAATACAAAAGGTCCGTTCATTCTTCTGTCAAGTTATGTTAGGGA
TTATAGAAAGTTGTAAGGCGCAGAGTGTTGGTTGTGCTAATAATTTTGTG
TTGAATTTTAGAGAGATAATGCACACGTACAATCAGTGTTCATGCAATGC
TTCAATGAAAGTATACTTGGTCTCTTACAATGTGCTCACCTACCGCCTTT
TCACTGGGCAAACGAGACTGCAGAAAAGGTACGTACACGTTATCGTAACT
CCAGtcataaagaaaatattaagtGGTAAATAGCAAAGACATAGCATTAC
AACTTGGGTCTCTATTCACATACTTTAATGTCAAGAAATATCGCGAGTGT
GGCCATTCGCGAAGTTTGGTATTTCGGGGGATTTAATTTCTGGCCTCGAA
AATTTCTGTCATTAAAGTAGATTTTTTGATAGTCCAATTGTATgtacaaa
tcaaacaaaaaccctTGCTAAGGTGACTTCTCAACATGAAAccatcgatt
ttttttcttttcataggCGCGCTTTGCTTTCATTCTATCTTTCCTTCAAA
AGAAGGAATCACTCGGAAATCTTCTTTCGGCGGAACAGAAGTTCAAACCG
ATTAACGTCGGGCGAATGGCATTCACTAATAATACGACGCATGCGCTCTA
TCCGCAACCAATCACAAAGGAGTTGCATTCGCCTTCTTGATTCATGTGTG
ATGTGAGAACATGGCTACCTACTGATCGCTCATTTTTGCATAGGAGTTCC
CTCTCTCTATGCACATACATAGTATACAGTGGGTAATTAAACNCTACCCA
CTGATCGCTCATTTTTGCATAGTACAGTGGGTAATTAAGCTTTAGAGTTT
ACTATTTTGTTTTACTACAGTAGAGAGTAGTGAAATCTTACATTTTATAC
GAGAACCCACGATCCAATTTTTATTTGTCTGTATGATACAtattatttat
tgcaaattttaaaCGTTATTTATTGAAAGTTTTGTATATTTGTAGATAGC
AACAGgaaagaaacattttaaaagattGAGTACATAATTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_016541	XLOC_016541	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000724	supercontig	sc0000724:51799..62439 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.47649	0.78397	0.555862	0.660272	2.96382	2.59458	0.261335	0.651292	0.247394	0.388826	1.84403	0.279534	0.109477	0.864704	2.01673	1.1622	0.669998	1.50912	0	2.44059e-10	1.36399	1.60082	0.876377	0.948686	0.665696	0.807511	0.534327	0	1.10147	0.27144

Blast

[Close]

BLAST of TCONS_00029078 vs. Swiss-Prot (Human)
Match: NPHP1 (Nephrocystin-1 OS=Homo sapiens GN=NPHP1 PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 9.748e-87
Identity = 150/410 (36.59%), Postives = 238/410 (58.05%), Query Frame = 3

Query:  921 KTSVTDVLKAMKAIPQGFRSSTLGKWYQK-EEYRSSSYVIPKTNSSNLQYNDLYWDPVNKKLRGQQTSTCRTITLVSVKSVPPIGAGVEILSRHVYFALWDGEKILSNIHVVRAV-PLERDLSWTFTPKVAKHIPSLYDGELVARINSDDRKISLLMELNYSYVRTSTGERSEISCGWASLSLFDESGAPVGNKNHDLIINGGTPFEKGVPLDPTLGANTNVSLMQSILRSNRQPKITVKTTTFNKMTKDIYDMLPERFVTCQRYARFIGYFRQHAATVFCKDDLIERGT--VFDTLLAQFPRALDYHDLMDALMMTWEEKAKSSLNRSQRRDNAHVQSVFMQCFNESILGLLQCAHLPPFHWANETAEKARFAFILSFLQKKE----SLGNLLSAEQKFKPINVGRMAF 2126
            + +  DVL  M AIP GFR STL +  ++  ++R++ ++ P+   S L + DL WD     +R + +     +TL S K +P  G  +++LSRHV   L+DG K+LSNIH VRA    ++  +WTF+P+V + +P L DG+   R NS    + +L EL  SY+R STGER E+SCGW  L LFD SG P+  K ++L +NGGTP+EKG+ +DP++    + S+   I+   RQP++ VK  + N+ ++++  +LPE  +        + ++RQ    V  KD +  + T  +   +LA FP  L+  D+MDAL  +W  K +S+L RS++RD   ++S F+  +++ +L LL    LPPF WA E  E AR+  I  FL++ +    +L  LLS +   +P ++    +
Sbjct:  313 QINTVDVLTTMGAIPAGFRPSTLSQLLEEGNQFRANYFLQPELMPSQLAFRDLMWDATEGTIRSRPSRISLILTLWSCKMIPLPGMSIQVLSRHVRLCLFDGNKVLSNIHTVRATWQPKKPKTWTFSPQVTRILPCLLDGDCFIRSNSASPDLGILFELGISYIRNSTGERGELSCGWVFLKLFDASGVPIPAKTYELFLNGGTPYEKGIEVDPSISRRAHGSVFYQIMTMRRQPQLLVKLRSLNRRSRNVLSLLPETLIGNMCSIHLLIFYRQILGDVLLKDRMSLQSTDLISHPMLATFPMLLEQPDVMDALRSSWAGK-ESTLKRSEKRDKEFLKSTFLLVYHDCVLPLLHSTRLPPFRWAEEETETARWKVITDFLKQNQENQGALQALLSPDGVHEPFDLSEQTY 721

The following BLAST results are available for this feature:

BLAST of TCONS_00029078 vs. Swiss-Prot (Human)

BLAST of TCONS_00029078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NPHP1	9.748e-87	36.59	Nephrocystin-1 OS=Homo sapiens GN=NPHP1 PE=1 SV=1	[more]

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TCONS_00029078 (transcript) - C. hemisphaerica