TCONS_00029047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029047
Unique NameTCONS_00029047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029047 ID=TCONS_00029047|Name=TCONS_00029047|organism=Clytia hemisphaerica|type=transcript|length=2664bp
TTTAAGGCCATCAGCCGTGATGTTTGTTGGACAACAATTCGATTTTAAAT
TGATTAACAAGTATACAGTAGTTATAGTTTTCAACCTAATTATATAGGAC
TTATAACTATCTTCCAATATATGAACAgttaatttccaaattttaattTA
TCTTTACGCGTACGTACAACATTATTCGCACGGAGGCAGTCCCAGCACGc
caaatattaaatatatgctacacaaattttgcacgGAGGCAGTCCCGGCA
CGCCAAATATTAGATATGTTAAATAAAATAAGTTTTGTCAAAAATCTAAG
AAGgaacaaaaaaattcagaatcaCTAGAACTATATGAGAGCGAAGAAGA
AAGAATATATTTGCTCCATGGAGTTCTGCTACCGCGGAGGCACAGGAGAA
CAGAACTCAAGAGGGCAAAGTTAATCTTTCTTCTTACACAACATATACCC
AATATTATTTTATAAAGAATTATTAacaatgaaattaaattttgtttaaa
aagttcGTTATCCGAAGCAGACAATAAATTCAAATCTTTTGAAGAGCTCA
CTTTTAGTACGAATGCTGAATACCATGTCTTATCGGAgaaatgtattttc
attttaacGGAAAAGTTGTTTCCCTTGTTGTTCGTTGCTTCTTACTTTGT
AAACCTTTAAACTGAATCAATGACACAAAGAAACCTCTAAATGATCGAAA
TGTATCATAAGTCATGCTGAATATTCCATACATTATTAAGCCAGTTTCAG
TATTCTTTATAATTGGAATTTGTATCAATCCGAAACCTTCAACCATTCCT
AATACAAGTGATAATTTCACACATACAGATCGAATGTTGATGTTTTGGTT
TCGTATAATGTTACCCACAGAATAACGGTGTTTCCGAATGACTTTAAAAC
TGATAATTAGTGTCATAATACTGGAAAAGTAACATAAAAGTGCAggtatg
aaataaaaataaacttgtGATTCTTCTTTCCCTATCCAGCATGTTTCAAT
GCCATATTGAAAATCGATAATATTGTATTCGTCAACAATAATGATACTTG
CTATGAGACTTGTTGTTAAACACAAACAAAATAGTAATCGATTTCTTgct
ttgctttttatttttttttctgatgatACCTTAATTCTAAATGAAGACAA
AGACTTTGTAATACTGAATCCCATATACATGGTCCACAAGCAAACATTGA
GCAAACTCCAATGCAGTCCTAAACCAAGCCATTTGCACGCTGAAGTTTGC
AAATCCACCAGAACTGATGCCAAGAAAATCACATCTGAAGCTAGTAGCAT
TTGTAATCTGTGTACACAAACTCTGAGATAGTATGCTCAGGATGGAGTTG
ATCTAGTTTGTTGTCGTTCAGAATGTCACACATacattttgaataatatt
ttaTCTCCTTAATTGACTGGACAATTGAATTGCTGCAAAGTCCAGAATCA
GTTATTCTAGTGGATGTCAACCCATACAGATCCGAATAATGAAATCTCCC
AGTTGTAACAACTAGTTTTACTTTAGATGGCGTtgacaagaacattttaa
tttcTGATTCGTTCAATGATACTTTGTAAACAAGGGAAGAGTCATTATTA
TAGATTGgtgttttattttggaaaacaCTCAAATAATTATTGATATGATA
ATTGTTCTTCTGCTCGATTACATAGGCCATAGAGTTACATATACCACCAC
AACTTCTGCTGTATTGAACTGTTGGTACTCTTTTTGGGACACACCTTCCA
TCAATCAAGTCGTATCCATCAGCGCATTTCACTAAAACACAGGAACCCTC
TAACGTATCAAATACTTTATCTGTAGGACACCCAGCAATAAGATTTTGAA
GATAATTAAAGGTCAATGTCTTCGACCAAGATCTCGATGTTCCTCGGTTC
CGGTTTTCACTACAAACACGACAAAACAGATTTTTGAAGTAGTAACCATA
CCTTGTCGTTAAATTGGCACTAAAGTGATGACAGAACATTGCCAGGGTTC
TATCACATTTTTCAGTGTTACAATTCACGTTGTATTGTCGACCTAACGAT
AAATTAATGTTACACCtttcacctttttttttatCATGTGCTCAACATAG
TCTATTGAAACGTTTCTAAAATCAATACTGTCAGGAACATTCCTGTCATC
GCACGTGTAGTTAAATTCAACGTCTTTAAAAGTGGAAATATTGTAACATT
TGGCACAAAACTTATTTCTGTACGCATAACCATCTGCCCCAATGACCGGC
ATGGTAAGATCACCATCATTAATGGTGAACTCGTTTCCCTGGCATTTAGA
GATTAGCCAAATGTCTTTACTTTCCTTTGGGCATCTATCAACTAGAATTA
AATCAACACGGTGTATAAGCGTGTAGCATGATAGTtgcattttgacattt
tctaaCAGTTTGTCTGTATATCTTTCCAAAGGTATTGGATTTTCATAATC
CCATAGATAGTCAATACAACAATTACCATCTACTGGACATTGCTTGATAT
CACAGCTACATTGTTTTGATGACACGTCACAAAGGTTTCCTAAGAAAGGT
TCAATATTTATGTCTCCATTAGTATTCCATAATCTTTTGACGAACTCTTC
TAGAGGGAACACATGATTTGTACCAGAAACAAAATCAATGTGTAAACCCA
AAAGTATTAGTGTA
Run BLAST on NCBI

transcript from alignment at sc0000723:116903..119628+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029047 ID=TCONS_00029047|Name=TCONS_00029047|organism=Clytia hemisphaerica|type=transcript|length=2726bp|location=Sequence derived from alignment at sc0000723:116903..119628+ (Clytia hemisphaerica)
TTTAAGGCCATCAGCCGTGATGTTTGTTGGACAACAATTCGATTTTAAAT
TGATTAACAAGTATACAGTAGTTATAGTTTTCAACCTAATTATATAGGAC
TTATAACTATCTTCCAATATATGAACAgttaatttccaaattttaattTA
TCTTTACGCGTACGTACAACATTATTCGCACGGAGGCAGTCCCAGCACGc
caaatattaaatatatgctacacaaattttgcacgGAGGCAGTCCCGGCA
CGCCAAATATTAGATATGTTAAATAAAATAAGTTTTGTCAAAAATCTAAG
AAGgaacaaaaaaattcagaatcaCTAGAACTATATGAGAGCGAAGAAGA
AAGAATATATTTGCTCCATGGAGTTCTGCTACCGCGGAGGCACAGGAGAA
CAGAACTCAAGAGGGCAAAGTTAATCTTTCTTCTTACACAACATATACCC
AATATTATTTTATAAAGAATTATTAacaatgaaattaaattttgtttaaa
aagttcGTTATCCGAAGCAGACAATAAATTCAAATCTTTTGAAGAGCTCA
CTTTTAGTACGAATGCTGAATACCATGTCTTATCGGAgaaatgtattttc
attttaacGGAAAAGTTGTTTCCCTTGTTGTTCGTTGCTTCTTACTTTGT
AAACCTTTAAACTGAATCAATGACACAAAGAAACCTCTAAATGATCGAAA
TGTATCATAAGTCATGCTGAATATTCCATACATTATTAAGCCAGTTTCAG
TATTCTTTATAATTGGAATTTGTATCAATCCGAAACCTTCAACCATTCCT
AATACAAGTGATAATTTCACACATACAGATCGAATGTTGATGTTTTGGTT
TCGTATAATGTTACCCACAGAATAACGGTGTTTCCGAATGACTTTAAAAC
TGATAATTAGTGTCATAATACTGGAAAAGTAACATAAAAGTGCAggtatg
aaataaaaataaacttgtGATTCTTCTTTCCCTATCCAGCATGTTTCAAT
GCCATATTGAAAATCGATAATATTGTATTCGTCAACAATAATGATACTTG
CTATGAGACTTGTTGTTAAACACAAACAAAATAGTAATCGATTTCTTgct
ttgctttttatttttttttctgatgatACCTTAATTCTAAATGAAGACAA
AGACTTTGTAATACTGAATCCCATATACATGGTCCACAAGCAAACATTGA
GCAAACTCCAATGCAGTCCTAAACCAAGCCATTTGCACGCTGAAGTTTGC
AAATCCACCAGAACTGATGCCAAGAAAATCACATCTGAAGCTAGTAGCAT
TTGTAATCTGTGTACACAAACTCTGAGATAGTATGCTCAGGATGGAGTTG
ATCTAGTTTGTTGTCGTTCAGAATGTCACACATacattttgaataatatt
ttaTCTCCTTAATTGACTGGACAATTGAATTGCTGCAAAGTCCAGAATCA
GTTATTCTAGTGGATGTCAACCCATACAGATCCGAATAATGAAATCTCCC
AGTTGTAACAACTAGTTTTACTTTAGATGGCGTtgacaagaacattttaa
tttcTGATTCGTTCAATGATACTTTGTAAACAAGGGAAGAGTCATTATTA
TAGATTGgtgttttattttggaaaacaCTCAAATAATTATTGATATGATA
ATTGTTCTTCTGCTCGATTACATAGGCCATAGAGTTACATATACCACCAC
AACTTCTGCTGTATTGAACTGTTGGTACTCTTTTTGGGACACACCTTCCA
TCAATCAAGTCGTATCCATCAGCGCATTTCACTAAAACACAGGAACCCTC
TAACGTATCAAATACTTTATCTGTAGGACACCCAGCAATAAGATTTTGAA
GATAATTAAAGGTCAATGTCTTCGACCAAGATCTCGATGTTCCTCGGTTC
CGGTTTTCACTACAAACACGACAAAACAGATTTTTGAAGTAGTAACCATA
CCTTGTCGTTAAATTGGCACTAAAGTGATGACAGAACATTGCCAGGGTTC
TATCACATTTTTCAGTGTTACAATTCACGTTGTATTGTCGACCTAACGAT
AAATTAATGTTACACCtttcacctttttttttatCATGTGCTCAACATAG
TCTATTGAAACGTTTCTAAAATCAATACTGTCAGGAACATTCCTGTCATC
GCACGTGTAGTTAAATTCAACGTCTTTAAAAGTGGAAATATTGTAACATT
TGGCACAAAACTTATTTCTGTACGCATAACCATCTGCCCCAATGACCGGC
ATGGTAAGATCACCATCATTAATGGTGAACTCGTTTCCCTGGCATTTAGA
GATTAGCCAAATGTCTTTACTTTCCTTTGGGCATCTATCAACTAGAATTA
AATCAACACGGTGTATAAGCGTGTAGCATGATAGTtgcattttgacattt
tctaaCAGTTTGTCTGTATATCTTTCCAAAGGTATTGGATTTTCATAATC
CCATAGATAGTCAATACAACAATTACCATCTACTGGACATTGCTTGATAT
CACAGCTACATTGTTTTGATGACACGTCACAAAGGTTTCCTAAGAAAGGT
TCAATATTTATGTTAAGGGTTTTTTTCCATAATGTTTTNCACAAAGGTTT
CCTAAGAAAGGTTCAATATTTATGTCTCCATTAGTATTCCATAATCTTTT
GACGAACTCTTCTAGAGGGAACACATGATTTGTACCAGAAACAAAATCAA
TGTGTAAACCCAAAAGTATTAGTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016518XLOC_016518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029047-exon-sc0000723-1491911889:116903..119436TCONS_00029047-exon-sc0000723-1491911889:116903..119436Clytia hemisphaericaexon
TCONS_00029047-exon-sc0000723-1510915933:116903..119436TCONS_00029047-exon-sc0000723-1510915933:116903..119436Clytia hemisphaericaexon
TCONS_00029047-exon-sc0000723-1575043694:116903..119436TCONS_00029047-exon-sc0000723-1575043694:116903..119436Clytia hemisphaericaexon
TCONS_00029047-exon-sc0000723-1491911889:119499..119628TCONS_00029047-exon-sc0000723-1491911889:119499..119628Clytia hemisphaericaexon
TCONS_00029047-exon-sc0000723-1510915933:119499..119628TCONS_00029047-exon-sc0000723-1510915933:119499..119628Clytia hemisphaericaexon
TCONS_00029047-exon-sc0000723-1575043694:119499..119628TCONS_00029047-exon-sc0000723-1575043694:119499..119628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000723supercontigsc0000723:116903..119628 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.202317	0.140922	0.0818121	0.128065	0.194883	0.0615996	0.130055	0.208725	0.0730666	0.0905048	0.0878461	0.0384977	0.0288332	0.0798494	0.0164118	0.0176123	0.520727	0.722864	0.0768098	0.0643008	1.56489	1.47208	0.480515	1.11474	0.294797	0.443115	0	0	0.0160397	0.0163419
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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