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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029021 ID=TCONS_00029021|Name=TCONS_00029021|organism=Clytia hemisphaerica|type=transcript|length=429bp
gtggtttTGTATACTTTGCTGCAAGCAATATTAAAGGTATGATTGAAGTT
CATGCCACTGCAGCCAATCAAATTAGCTCTCTTACAGCATCCACCCAAAT
AAGAGCTATCGAAAGAATACAAAATGTACGACAATTACTTTccagtgacg
tcatcaatttggACGATGACGTCATAGTTGAATTGGAAATCACTGCAGGG
GCTTATGGGAACGCTATGGTATATTTCGAAGAAtcgaaaaaggaagaaaa
atactTCGAGACTGGGTTGGATGAAAAGATAATAACGGCTGCTTTCAAAT
ACAGGTATAAAGAATGCGGTTACAAGAAGATCACAGCCTTCGTGGAGAAT
GACATCACACCTTCCATCCAAAGTGAACCAATCACCCTCTTTGTTGCTTG
TCCTATATCCAAAGACGTTGTTATCCAAT Run BLAST on NCBI protein sequence of TCONS_00029021-protein >TCONS_00029021-protein ID=TCONS_00029021-protein|Name=TCONS_00029021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
GFVYFAASNIKGMIEVHATAANQISSLTASTQIRAIERIQNVRQLLSSDV
INLDDDVIVELEITAGAYGNAMVYFEESKKEEKYFETGLDEKIITAAFKY
RYKECGYKKITAFVENDITPSIQSEPITLFVACPISKDVVIQ Run BLAST on NCBI transcript from alignment at sc0000720:102624..103852- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029021 ID=TCONS_00029021|Name=TCONS_00029021|organism=Clytia hemisphaerica|type=transcript|length=1229bp|location=Sequence derived from alignment at sc0000720:102624..103852- (Clytia hemisphaerica)
GTGGTTTTGTATACTTTGCTGCAAGCAATATTAAAGGTAAAGTTTTGTTT
TCAAACATTATAGTAAAAGATTTGCTACACTGGCATTTTTTCTACATCAA
AACACATTTGTTTTCTCTTAAATAAAACCTGTTTTGAATATAGTCTATTG
ACTAATATTTCCTAGCAGAAAACATAAGCATGTCGAATTTTTAAATTTAT
ACATTCCTGTCAATTCTACTTTCAATCTAGGTATGATTGAAGTTCATGCC
ACTGCAGCCAATCAAATTAGCTCTCTTACAGCATCCACCCAAATAAGAGC
TATCGAAAGAATACAAAATGTACGACAATTACTTTCCAGTGACGTCATCA
ATTTGGACGATGACGTCATAGTTGAATTGGAAATCACTGCAGGGGCTTAT
GGGAACGCTATGGTATATTTCGAAGAATCGAAAAAGGAAGAAAAATACTT
CGAGACTGGGTTGGATGAAAAGATAATAACGGCTGCTTTCAAATACAGGT
AGATTTGACTTTTACATAGAGTCTGACGTTTATTACCGATTTCGTGTGAC
GTCATTTTCACCCATGATCAGCCATTTTTCTAAGAAATGGTAGAAAGTAT
ATGTACAGGATAAATTAAGTAAGACCTTGATCATAGGTCAAAGTCTTCAG
ATAGTTCCCCTTTGGACCTGCAAATAGTTTTTTTATTTTGTTGGTGAAAT
TTATGTCAGTTACGAACAGTCAGGATGCTTGAGGATGGTCCCTAACTGGA
TTTTTCCAAATCAGTCTATAACCTCTCAGTACTAGTATCCCAAAGGGGGA
GATCTAAAGTCGGTTGTTCTGCTTAATATAAAAAAGTGCTCTCCTGAATC
CTGCGAAAACCATATTTGATTATCTGACAGACTGAAATATCTTATTCCAA
ATAGATACGATTTCCTCATAGTGGGATTCCTAAAAGAATTCAAAGAAAGC
TTTTGGCTGACTCAACTATGTATATCGTTTGACATTATTACTTTTTAGTG
TCTAGTTTGCTCGAATTTTTCAATATGCTTTCCTCAAGGAATTACAGCTC
AACCTTTTGTAAAATTACTATTATCACATGCACAATATTTTACAAATTCT
CTAGGTATAAAGAATGCGGTTACAAGAAGATCACAGCCTTCGTGGAGAAT
GACATCACACCTTCCATCCAAAGTGAACCAATCACCCTCTTTGTTGCTTG
TCCTATATCCAAAGACGTTGTTATCCAAT Coding sequence (CDS) from alignment at sc0000720:102624..103852- >TCONS_00029021 ID=TCONS_00029021|Name=TCONS_00029021|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0000720:102624..103852- (Clytia hemisphaerica)
GTATAAAGAATGCGGTTACAAGAAGATCACAGCCTTCGTGGAGAATGACA
TCACACCTTCCATCCAAAGTGAACCAATCACCCTCTTTGTTGCTTGTCCT
ATATCCAAAGACGTTGTTATCCAAGTATGATTGAAGTTCATGCCACTGCA
GCCAATCAAATTAGCTCTCTTACAGCATCCACCCAAATAAGAGCTATCGA
AAGAATACAAAATGTACGACAATTACTTTCCAGTGACGTCATCAATTTGG
ACGATGACGTCATAGTTGAATTGGAAATCACTGCAGGGGCTTATGGGAAC
GCTATGGTATATTTCGAAGAATCGAAAAAGGAAGAAAAATACTTCGAGAC
TGGGTTGGATGAAAAGATAATAACGGCTGCTTTCAAATACAGGGTTTTGT
ATACTTTGCTGCAAGCAATATTAAAGGTATAAAGAATGCGGTTACAAGAA
GATCACAGCCTTCGTGGAGAATGACATCACACCTTCCATCCAAAGTGAAC
CAATCACCCTCTTTGTTGCTTGTCCTATATCCAAAGACGTTGTTATCCAA
GTATGATTGAAGTTCATGCCACTGCAGCCAATCAAATTAGCTCTCTTACA
GCATCCACCCAAATAAGAGCTATCGAAAGAATACAAAATGTACGACAATT
ACTTTCCAGTGACGTCATCAATTTGGACGATGACGTCATAGTTGAATTGG
AAATCACTGCAGGGGCTTATGGGAACGCTATGGTATATTTCGAAGAATCG
AAAAAGGAAGAAAAATACTTCGAGACTGGGTTGGATGAAAAGATAATAAC
GGCTGCTTTCAAATACAGGGTTTTGTATACTTTGCTGCAAGCAATATTAA
AGGTATAAAGAATGCGGTTACAAGAAGATCACAGCCTTCGTGGAGAATGA
CATCACACCTTCCATCCAAAGTGAACCAATCACCCTCTTTGTTGCTTGTC
CTATATCCAAAGACGTTGTTATCCAAGTATGATTGAAGTTCATGCCACTG
CAGCCAATCAAATTAGCTCTCTTACAGCATCCACCCAAATAAGAGCTATC
GAAAGAATACAAAATGTACGACAATTACTTTCCAGTGACGTCATCAATTT
GGACGATGACGTCATAGTTGAATTGGAAATCACTGCAGGGGCTTATGGGA
ACGCTATGGTATATTTCGAAGAATCGAAAAAGGAAGAAAAATACTTCGAG
ACTGGGTTGGATGAAAAGATAATAACGGCTGCTTTCAAATACAGGGTTTT
GTATACTTTGCTGCAAGCAATATTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029021-exon-sc0000720-1575043694:103817..103852 | TCONS_00029021-exon-sc0000720-1575043694:103817..103852 | Clytia hemisphaerica | exon |
| TCONS_00029021-exon-sc0000720-1575043694:103355..103622 | TCONS_00029021-exon-sc0000720-1575043694:103355..103622 | Clytia hemisphaerica | exon |
| TCONS_00029021-exon-sc0000720-1575043694:102624..102748 | TCONS_00029021-exon-sc0000720-1575043694:102624..102748 | Clytia hemisphaerica | exon |
| TCONS_00029021-exon-sc0000720-1510915933:103817..103852 | TCONS_00029021-exon-sc0000720-1510915933:103817..103852 | Clytia hemisphaerica | exon |
| TCONS_00029021-exon-sc0000720-1510915933:103355..103622 | TCONS_00029021-exon-sc0000720-1510915933:103355..103622 | Clytia hemisphaerica | exon |
| TCONS_00029021-exon-sc0000720-1510915933:102624..102748 | TCONS_00029021-exon-sc0000720-1510915933:102624..102748 | Clytia hemisphaerica | exon |
| TCONS_00029021-exon-sc0000720-1491911889:103817..103852 | TCONS_00029021-exon-sc0000720-1491911889:103817..103852 | Clytia hemisphaerica | exon |
| TCONS_00029021-exon-sc0000720-1491911889:103355..103622 | TCONS_00029021-exon-sc0000720-1491911889:103355..103622 | Clytia hemisphaerica | exon |
| TCONS_00029021-exon-sc0000720-1491911889:102624..102748 | TCONS_00029021-exon-sc0000720-1491911889:102624..102748 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000720 | supercontig | sc0000720:102624..103852 - |
Blast
The following BLAST results are available for this feature:
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