TCONS_00029020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029020
Unique NameTCONS_00029020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029020 ID=TCONS_00029020|Name=TCONS_00029020|organism=Clytia hemisphaerica|type=transcript|length=844bp
GTCACTTATATCAAAGTAAATGTAGAGGAATGCGGGCCGCCTTTCCTCAA
AATTGACCCAAAGGACTTTCCAGTACTCAAGAAAGACCACGAGAGACTTG
TCTCAATTCCTTGGTATGGCCCTCAGAAACAATGTCAACGATTGTTCTTC
TTTGGTTTTCATCTTTTCATATTAACTGTTGTTAACCAAGAACTTAATCA
ACCTACCAAGAAAATTGATACCAGAGTTGATTTCACCAAGAACGAACTTC
AGATTCTGATTCAACCCTATACATTTGACGCTGGTACAATTGCCATTAAC
TTGACGATGAAGTCAAAGATTACGGAGGATTTCTATCAGCTCCCACTGAC
CATCTTACCTGTAGCATTGCTTCCGCAGATATCCGGAGGAGCACACCGCG
TTGTCCAGCAAATGTCTTATTACGAGATCACCGAGAGAACTGTGTTTACC
GTTCTTATGCTGAACATAACAGGGAACATCGATCCCGAAGCAAGTGATAA
TAGCATGAATGACATTCAATTCGTATGGCAATGTCGATTGTTGAGTATCG
AGGAAGATTGTCAATCCAAAGCAAACGAGAACAAGCAATGCTGTAGTGCA
GATTTCCTTCCTTTCGGTTCGTCTCAACCATGGGCGACACTCGATACACG
ATCTCTGATTTCCAACCACACGTACGAGATTAAAGTAACAGCATCAAAGG
AGGGAAGATTGCCTGGTACTTTTATTCAGAAAGTGAAGANGCATCTGATC
AGAAATTTATTCAAGATTCCATAAATTATATtaataaagcaaaattttaa
ctttcgttttttccCTATTTCCACCTCTGGGCCCACTGTGTTAt
Run BLAST on NCBI

protein sequence of TCONS_00029020-protein

>TCONS_00029020-protein ID=TCONS_00029020-protein|Name=TCONS_00029020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
VTYIKVNVEECGPPFLKIDPKDFPVLKKDHERLVSIPWYGPQKQCQRLFF
FGFHLFILTVVNQELNQPTKKIDTRVDFTKNELQILIQPYTFDAGTIAIN
LTMKSKITEDFYQLPLTILPVALLPQISGGAHRVVQQMSYYEITERTVFT
VLMLNITGNIDPEASDNSMNDIQFVWQCRLLSIEEDCQSKANENKQCCSA
DFLPFGSSQPWATLDTRSLISNHTYEIKVTASKEGRLPGTFIQKVKXHLI
RNLFKIP
Run BLAST on NCBI

transcript from alignment at sc0000720:100892..102375-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029020 ID=TCONS_00029020|Name=TCONS_00029020|organism=Clytia hemisphaerica|type=transcript|length=1484bp|location=Sequence derived from alignment at sc0000720:100892..102375- (Clytia hemisphaerica)
GTCACTTATATCAAAGTAAATGTAGAGGAATGCGGGCCGCCTTTCCTCAA
AATTGACCCAAAGGACTTTCCAGTACTCAAGAAAGACCACGAGAGACTTG
TCTCAATTCCTTGGTATGGCCCTCAGAAACAATGTCAACGATTGTTCTTC
TTTGGTTTTCATCTTTTCATATTAACTGTTGTTAACCAAGAACTTAATCA
ACCTACCAAGAAAATTGATACCAGAGTTGATTTCACCAAGAACGAACTTC
AGATTCTGATTCAACCCTATACATTTGACGCTGGTACAATTGCCATTAAC
TTGACGATGAAGTCAAAGATTACGGAGGATTTCTATCAGCTCCCACTGAC
CATCTTACCTGTAGCATTGCTTCCGCAGATATCCGGAGGAGCACACCGCG
TTGTCCAGCAAATGTCTTATTACGAGATCACCGAGAGAACTGTGTTTACC
GTTCTTATGCTGAACATAACAGGTAATAGTAATTTTTAGAGCTTTGTTAT
ACGTTTTTTCCGAAAAAATTGACAGTTTGCATATTTTGATTATTGCTCTT
GAAGGAGAAAAAATAGGTTTGAGCAGACTATTGTTAAGCTTTAAAATCAT
ACATTTTGAAAATGTAGGGGAAAGATATTACTTGTCCAAGAATTTTCAGT
CATTTCATTAGCCTGGATATCTATGACTATTTGGATGGTGAATACTATAT
AACGAAATGTTCATTCAAATCATTCTTTCTTTTGCTCTCTATTTTGACAT
GCTATTGCTAATTTTTTGCTGAAGTGAGTGTTGACCGAGTTGTGAAGGTG
CTAGAGCGCCTGAGCCAAGGGGTACCCGGTTCGAATCATACTTTGTAGAC
TTTGTACCAGAGTGAATCTTACGTTATAGTAGTATACTCTGTGCGCATTG
TTTTTTTGATAAAAAAATTCCCGTACGGAGACCTCTGCAATGAAGTATGA
CTTCAGTTCTCTATCAACACTTCTCTCATCGTCTCCCCTTTCTCACCAAC
ACTCCGTCGCAGTGGTTGGCTAGCCGTTGATCCCGTGAAAATAATCAAAA
GACTGCCTTAACGTCCTAAATTACTGGGCTATCCACGTAAAATATCGACT
CTTTCTATGTAGGGAACATCGATCCCGAAGCAAGTGATAATAGCATGAAT
GACATTCAATTCGTATGGCAATGTCGATTGTTGAGTATCGAGGAAGATTG
TCAATCCAAAGCAAACGAGAACAAGCAATGCTGTAGTGCAGATTTCCTTC
CTTTCGGTTCGTCTCAACCATGGGCGACACTCGATACACGATCTCTGATT
TCCAACCACACGTACGAGATTAAAGTAACAGCATCAAAGGAGGGAAGATT
GCCTGGTACTTTTATTCAGAAAGTGAAGANGCATCTGATCAGAAATTTAT
TCAAGATTCCATAAATTATATTAATAAAGCAAAATTTTAACTTTCGTTTT
TTCCCTATTTCCACCTCTGGGCCCACTGTGTTAT

Coding sequence (CDS) from alignment at sc0000720:100892..102375-

>TCONS_00029020 ID=TCONS_00029020|Name=TCONS_00029020|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at sc0000720:100892..102375- (Clytia hemisphaerica)
GGAACATCGATCCCGAAGCAAGTGATAATAGCATGAATGACATTCAATTC
GTATGGCAATGTCGATTGTTGAGTATCGAGGAAGATTGTCAATCCAAAGC
AAACGAGAACAAGCAATGCTGTAGTGCAGATTTCCTTCCTTTCGGTTCGT
CTCAACCATGGGCGACACTCGATACACGATCTCTGATTTCCAACCACACG
TACGAGATTAAAGTAACAGCATCAAAGGAGGGAAGATTGCCTGGTACTTT
TATTCAGAAAGTGAAGANGCATCTGATCAGAAATTTATTCAAGATTCCAT
AAGTCACTTATATCAAAGTAAATGTAGAGGAATGCGGGCCGCCTTTCCTC
AAAATTGACCCAAAGGACTTTCCAGTACTCAAGAAAGACCACGAGAGACT
TGTCTCAATTCCTTGGTATGGCCCTCAGAAACAATGTCAACGATTGTTCT
TCTTTGGTTTTCATCTTTTCATATTAACTGTTGTTAACCAAGAACTTAAT
CAACCTACCAAGAAAATTGATACCAGAGTTGATTTCACCAAGAACGAACT
TCAGATTCTGATTCAACCCTATACATTTGACGCTGGTACAATTGCCATTA
ACTTGACGATGAAGTCAAAGATTACGGAGGATTTCTATCAGCTCCCACTG
ACCATCTTACCTGTAGCATTGCTTCCGCAGATATCCGGAGGAGCACACCG
CGTTGTCCAGCAAATGTCTTATTACGAGATCACCGAGAGAACTGTGTTTA
CCGTTCTTATGCTGAACATAACAGGGAACATCGATCCCGAAGCAAGTGAT
AATAGCATGAATGACATTCAATTCGTATGGCAATGTCGATTGTTGAGTAT
CGAGGAAGATTGTCAATCCAAAGCAAACGAGAACAAGCAATGCTGTAGTG
CAGATTTCCTTCCTTTCGGTTCGTCTCAACCATGGGCGACACTCGATACA
CGATCTCTGATTTCCAACCACACGTACGAGATTAAAGTAACAGCATCAAA
GGAGGGAAGATTGCCTGGTACTTTTATTCAGAAAGTGAAGANGCATCTGA
TCAGAAATTTATTCAAGATTCCATAAGTCACTTATATCAAAGTAAATGTA
GAGGAATGCGGGCCGCCTTTCCTCAAAATTGACCCAAAGGACTTTCCAGT
ACTCAAGAAAGACCACGAGAGACTTGTCTCAATTCCTTGGTATGGCCCTC
AGAAACAATGTCAACGATTGTTCTTCTTTGGTTTTCATCTTTTCATATTA
ACTGTTGTTAACCAAGAACTTAATCAACCTACCAAGAAAATTGATACCAG
AGTTGATTTCACCAAGAACGAACTTCAGATTCTGATTCAACCCTATACAT
TTGACGCTGGTACAATTGCCATTAACTTGACGATGAAGTCAAAGATTACG
GAGGATTTCTATCAGCTCCCACTGACCATCTTACCTGTAGCATTGCTTCC
GCAGATATCCGGAGGAGCACACCGCGTTGTCCAGCAAATGTCTTATTACG
AGATCACCGAGAGAACTGTGTTTACCGTTCTTATGCTGAACATAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016499XLOC_016499Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029020-proteinTCONS_00029020-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029020-exon-sc0000720-1575043694:101904..102375TCONS_00029020-exon-sc0000720-1575043694:101904..102375Clytia hemisphaericaexon
TCONS_00029020-exon-sc0000720-1575043694:100892..101263TCONS_00029020-exon-sc0000720-1575043694:100892..101263Clytia hemisphaericaexon
TCONS_00029020-exon-sc0000720-1510915933:101904..102375TCONS_00029020-exon-sc0000720-1510915933:101904..102375Clytia hemisphaericaexon
TCONS_00029020-exon-sc0000720-1510915933:100892..101263TCONS_00029020-exon-sc0000720-1510915933:100892..101263Clytia hemisphaericaexon
TCONS_00029020-exon-sc0000720-1491911889:101904..102375TCONS_00029020-exon-sc0000720-1491911889:101904..102375Clytia hemisphaericaexon
TCONS_00029020-exon-sc0000720-1491911889:100892..101263TCONS_00029020-exon-sc0000720-1491911889:100892..101263Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000720supercontigsc0000720:100892..102375 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.223482	0.163448	0.253038	0.703087	1.40063	0.676376	0.790133	0.347249	0.235405	0.116635	0.113209	0.0768569	1.5357	1.07603	0.666227	0.949354	0.125825	0.221986	0.858722	2.48596	0.486169	0.395227	0.06406	0.174719	0.179957	0.160607	0.316477	0.245279	0.124024	0.189541
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002859PKD/REJ-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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