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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029018 ID=TCONS_00029018|Name=TCONS_00029018|organism=Clytia hemisphaerica|type=transcript|length=4394bpRun BLAST on NCBI protein sequence of TCONS_00029018-protein >TCONS_00029018-protein ID=TCONS_00029018-protein|Name=TCONS_00029018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1464bp KAVGITSTISSSLKHVEHFNQDTQDTVNTLLNTVGNLMNGQTKLQDKDNERun BLAST on NCBI transcript from alignment at sc0000720:69129..91178- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029018 ID=TCONS_00029018|Name=TCONS_00029018|organism=Clytia hemisphaerica|type=transcript|length=22050bp|location=Sequence derived from alignment at sc0000720:69129..91178- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000720:69129..91178- >TCONS_00029018 ID=TCONS_00029018|Name=TCONS_00029018|organism=Clytia hemisphaerica|type=CDS|length=74664bp|location=Sequence derived from alignment at sc0000720:69129..91178- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00029018 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 155.221 bits (391), Expect = 1.127e-37 Identity = 111/350 (31.71%), Postives = 181/350 (51.71%), Query Frame = 2
Query: 1082 NFKSYCVTCTYWDVHTNSWETDGCAVVPEETDIQYTICHCNHLTAFSSMMVPPSPLPRMS-----FALLKEXXXXXXXXXXXXXXXXXXXXXXRKFDQIDADKIGGCLLPTNQDTDGHFYXXXX----XXXXXXXXKVFIKIYGARRNSRTVRLRDEHRQTFQSNGCDTFIMSAPRKLGEIISLKVYHDNSGG--GWFVREIEVEDLETTKMYFFYPNRWLAVEKNDGRVSCNLLPTVEEELSKDTKYLFFTKLRRDLFDGHIWFSLVGRPPRSIFTRCQRLSVAVCMLLTSMIANVMFYGQLPKQSAAVENDSSNMAFSWKKLYIAVISSLVGIPVNVILNLLYRHIKP 2098
F S+CV +WD +W+ GC V P + Q T C CNHLT F S + S + FA ++ V+ VG + +Y+L +I R+ D D K+ +L N + Y +T+ +AT+SKV + +YG L D F+ D F++S LGE+ SL+++HDNSG W+V + V DL + ++F N WL++ D + + P E+ K +LFF K DGHIW+S+ R RS FTR QR+S +LL +M+ ++MF+G +PK A + D + F+W+++ I + SS++ P+N+++ ++++ +P
Sbjct: 1277 TFLSHCV---FWDEVQETWDDSGCQVGPRTSPYQ-THCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVKVTVLEDNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLD-KVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWG-VPKDPAEQKMDLGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRP 1620 The following BLAST results are available for this feature:
BLAST of TCONS_00029018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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