TCONS_00029017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029017
Unique NameTCONS_00029017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029017 ID=TCONS_00029017|Name=TCONS_00029017|organism=Clytia hemisphaerica|type=transcript|length=2534bp
CAAAGAGTGCTCTACCgaaggagcataatatcaagaaaagaaaaataacc
aaatttgctttttacaatactttaagtttcatgtttccaatcgTCAGTTG
TAAACTTAAAAGTTGTAACTGTGAAGTATGTTTATCAGTATTCGGAGAAT
CCATAAACTCTACATTGCAGTCATTAGTTCATTGGTTGGAATTCCCGTCA
ACGTCATCTTGAATCTGTTGTACCGTCACATCAAACCGTTGCCGAAGGTA
TCGGACGAATTGAAACCGTTCACCGATAAATATATCGACACCAAGaagaa
acatttgaaagaaaaaaagaaagaacgaAGTAAAGAGAAAACGCAATCAG
CTTTATTATATGCTTCGATCGGACCAACTCTAAACACAGCCATCCTTCAC
AACCAAGATTACACACAATGTCCTCAAGAAGACCATTACAGTGAAGATGA
TGATCAATTCAACGAAGATGAAGCAACAAATGAAAAGGAAACAGAAAGTT
TAACGGAACCAAAGATGCTACCTTACTGGTGTCTCTATCCGACTCTTCTC
TTCAATGTTCTTTGTATATTGACCTCATCATTCTTTATTATTTGGTATGG
TATGGCTTTTGGTAATACAAGATCTTTGGAATGGCTTGCTTCGGTCTCTT
TTGGACTTatgCAAGGAATTTTCATAACTCAACCAATAAAAGTTCTTATC
TTGGCTGCATTCATCGCCTTTGTCATCAAAAGTATCGAACGTGAACAGAA
ATCCATCTTAGAGGAAGTCTTCACACGTTACGTCAGCCATCAAATCAGTA
TccgaaaacaacaacaaagcCAGGATGTCTTAAATACGGACGAGGATGAG
GTGTTCGAGAAAAACGTACCGGAGCTGCCCGTTCACGAGAAAGTCTTGAA
ACCACCAAGTACGACACGTCTTGAACGTCAACGGCAACAACGTGTTCTAC
AATTACGTTTACGTAAAGAGTTGATCGAAATCGCCCTCAtgtttttgttc
actttttccgtatattttctgGGATACCACCTGCACGATGAAGATGCTTT
CCTGCAAACACAAAGTATTCGAGAAATGTTGAAAGTGTCTTTGAGGCCTA
TGTCTAAAGCTCGATACAAGAAAGCGGCGGTAGATTCTTTCGTCGCTGTT
GGTTCGAAGCGTGATGTCTTTCCCTTTATCGAGAACACAGTAATACACGC
AACATACCCTCACGAATGGTACGCCAACCTTTCAAGTGTGTATGACAATG
AGACGGAGATCAAATATTTCCCTGGCAATCTCTACACCGAAGATCTTTAC
ACCAAGATTGTGTCACCATTGAGTATAAGACAAGTCAGAGTGCACTCAAA
GCGTTGCGAAGATACAGTTGCAGATTATTTTGGTGCAGGGCATTTATGTT
ATGGACAGTACGGTATGATGCACCAACAGAAAGGAGACTACCACCATGAG
TGGAATGGAACAAGAAGTTACTCTTCCTCTTCTGAGGATGACATCATGTG
GAGATATCGTGATTCAGAAGAGACAGGGAGTATGATGGTTCAAGGAGAAC
TGGGAATCTACCTTGGCGGTGGATATTCGGTGCAGCTCTTTCCCAAACAA
GACAACCATGAAATCATTGAGCATCTGTTAGATGATCACTGGATGAATCG
CGGTACACGGGCTATACTTATTACATTCAGTGTCTTCAATGGTGGTGTCA
AATACTTCAGTAGCGTTTCTTTACTGTTAGAGTTCCCCAACTCTGCAGGT
GTTATCAAACAACATTccatttcaacttttaaaaccATCAAATACGCCAG
GACTCAAACAAGAGTTATCATCACCGAATTCTTTACCCTCCTTCTAATCT
TGTATTATACGTTCATCAACCTGCGCAAAATCTTTCATCAACGATTCGGA
TATCTCGGCTCATTTTGGAACTTGGTGGATTTTGCGATGGTAGTGAGCTC
TATTTCCTCCATTGTCATTCATTTTTATCGTTCAAGTATCGAAGCTCGCG
TTTTATCACACGTGGCAGGACGTCAGCCTAACGAATCTATCAGTTTCGCG
GACGTCGGTTTTTGGGGATACGGCTACACGCAATCGGTAGCTTGCGTCAA
TTTCTTTGCAACGATTCGTTTGATACGTCTACTACGTCTTAACAGGCGCA
CTTCTTTACTGGAGGCTACTCTCATCAAAGCCAAAAAGTTCCTCTACTCA
TACGCTATAGTGTTTGCCATCATGATGTCTGGCTTCATCATCTTTGCAAC
TATGTTGTTTCGGACTCGCATCTACGAGTACCGTAAACTGTCGAGTGCAG
CTGCAGCAGTGATTCGATTACTTCTTGGTAAATACAGCTTCAGCGATTAC
CAAGAAGCTCACTTGTTACTTGGTCCTTTATTCTTCTTGATCTTCAACGT
CACATGCAATTGGATCATGATCAACATGCTCATCTCCATCTTGGATGATG
CGTCTCATGAAGTGAAGCAAGAACGAGAAGACTTCATCAGTCAAGAAGCA
GAAGCTATCAACTACTTTCTTGCACAACTTAAAG
Run BLAST on NCBI

transcript from alignment at sc0000720:69129..75497-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029017 ID=TCONS_00029017|Name=TCONS_00029017|organism=Clytia hemisphaerica|type=transcript|length=6369bp|location=Sequence derived from alignment at sc0000720:69129..75497- (Clytia hemisphaerica)
CAAAGAGTGCTCTACCGAAGGAGCATAATATCAAGAAAAGAAAAATAACC
AAATTTGCTTTTTACAATACTTTAAGTTTCATGTTTCCAATCGTCAGTTG
TAAACTTAAAAGTTGTAACTGTGAAGTATGTTTATCAGTATTCGGAGAAT
CCATAAAGTAACTTTTTTGACTATTTGATATTTTCTTCAACGTACCAAAT
GCAAATCTAAGTACGCGCATTATCAACAATAATAACTACCCAAATCAACT
TTACCTCCAAAGTTCTCTAGAAGACATTGTTTTTCCATAGAATTTATAAG
TATCGCCTTATTTCTTGCTCATTGATTCGTCCCAGGGTCCCAGACTTAGT
GAAGCGGAAATATTCACTCAGCAATACTAGAATTGAAAGTAAAAATGATC
TGAAATGCAAATTGTAAGAAGTAAACAAATAAAATTATCCAAGTCTTTGA
CCTCTTCCTAATTTCAAGGGAGCTTTACAGCCGCAGCTGATTTACTTCCC
TATTCCAAAAGCTTGTTTGAGCTAGTTTGATTATTCGAGCTTTCAATTTA
GACTATAGTACATTGTCTTTTTTGTTTCAGCTCTACATTGCAGTCATTAG
TTCATTGGTTGGAATTCCCGTCAACGTCATCTTGAATCTGTTGTACCGTC
ACATCAAACCGTTGCCGAAGGTATCGGACGAATTGAAACCGTTCACCGAT
AAATATATCGACACCAAGAAGAAACATTTGAAAGAAAAAAAGAAAGAACG
AAGTAAAGAGAAAACGCAATCAGCTTTATTATGTAATGATGGTATTTCAT
CTCTGCTTCATTTGCTTTCATTTTCACTTCTGCCGCTATTAGCCCTTTGT
GAATATCAACAGGCTTATCCAATAAGGCAAAGAATAAGGATCAGCCAAAG
AGCGCTTGAATTTTTTATCTAATAGCGAGTTTATGTGTGTCGTTCTGAAA
TCTGAAATGTAGCATATTACATTTCGATTTTTCTATTTCCTGACTGACTG
AGGACGATCGTAGAACAACACTTTTGCCGTCCTCGATTTTCGCGGGTCAA
AACTGCGAATACACGGGTTAAAAATTTTATCAATGCAGTCAAAACATGTG
ATTACTCAATAAAGTCCACGTGATTTTATTCCCATGTTACTTGCTTTACA
ATTTACAGCTGATAACTTTATTAGTGTCAATAAATTCGAACCAATCAGAA
ATAGATGTCATGTAAACAAGCACATAAAAATTTCTAGTAAAAACGTGATT
TGTTTTCAGACCTGTGTATTGTTCCAAATCGTTTCAGTCACTCTGCCACT
CTCAAAGTAAAAAATATAGACTCGCTAATCATTGGGGTGGTGGCTTAAAC
GTAAAGGTTTACTATCGGTAGAAGCTCCTGTTACGATCAATGAGAGTTTC
TCTGGGGACATTTTACTCGGTTGAAAAGAGGTGCTGGTTAGGGTAGACGG
TTAGGTTTTTGGATGTAACTAAGTCTCTTCAAGGGCTACAAAAACAAAAA
ATAGTCAAGATAGTTTCTCTCCGAGTGTTTGATTCTTCATTCTTAGGGAA
TATCAGAGGGAAAAAAGTTAAAACAATTTTAAATTCCTTTTCAACAAATT
CTACTCCTTATCCATACCATATTTTCAGATGCTTCGATCGGACCAACTCT
AAACACAGCCATCCTTCACAACCAAGATTACACACAATGTCCTCAAGAAG
ACCATTACAGTGAAGATGATGATCAATTCAACGAAGATGAAGCAACAAAT
GAAAAGGAAACAGAAAGTTTAACGGAACCAAAGATGCTACCTTACTGGTG
TCTCTATCCGACTCTTCTCTTCAATGTTCTTTGTATATTGACCTCATCAT
TCTTTATTATTTGGTATGGTATGGCTTTTGGTAATACAAGATCTTTGGAA
TGGCTTGCTTCGGTCTCTTTTGGACTTGTAAGAACAATATTCTTTATTTC
ATTTCGTCTCAAAAAGATCAACCAAAGTTTCAACTAAAAATGGAGCATAA
CAGATTTTTTTATAAGAGCATCCAAAAGTTTTGATCCAGTTTGTTGATGT
TCTGAACTTTTTTGAGTTGTAAGTATGAAAGTGTTCTTTTTTGACCATTT
TGTGAGTATTTTTGTGAGATTTGCTTAAGGAAATGGGTGTTTTAGAGTCC
CGAATACCTGAAATGTTGTTTCAGTATCTTGCAAGAATTGAGTATTGTAT
ATGATTTATTATAAAGATAATGTATGTCTGAAGAAAACTAAAATTCGAGT
TCCTGAATATATCACATTTTTATCGAAGATAGAGTTAAACCAAAATAAAC
TTTTTTTAATTTAGATGCAAGGAATTTTCATAACTCAACCAATAAAAGTT
CTTATCTTGGCTGCATTCATCGCCTTTGTCATCAAAAGTATCGAACGTGA
ACAGAAATCCATCTTAGAGGAAGTCTTCACACGTTACGTCAGCCATCAAA
TCAGTATCCGAAAACAACAACAAAGCCAGGATGTCTTAAATACGGACGAG
GATGAGGTGTTCGAGAAAAACGTACCGGAGCTGCCCGTTCACGAGAAAGT
CTTGAAACCACCAAGTACGACACGTCTTGAACGTCAACGGCAACAACGTG
TTCTACAATTACGTTTACGTAAAGAGTTGATCGAAATCGCCCTCATGTTT
TTGTTCACTTTTTCCGTATATTTTCTGGGATACCACCTGCACGATGAAGA
TGCTTTCCTGCAAACACAAAGTATTCGAGAAATGTTGAAAGTGTCTTTGA
GGCCTATGTCTAAAGCTCGATACAAGAAAGCGGCGGTAGATTCTTTCGTC
GCTGTGAGTATTTCCTTACTAAACTCTGGTTAAGGAGTTTCTTAAAATCA
GTGTTTTTCATTCGTGATTGTACGTAAATCCGATTAATCGCGATAGTCGG
GTTCGATTTCCTGCTCTTTCCGGTTTGATTTCCCGATTTGGTTTGCGCTC
GTTCTTACTAGGATTACTCTTTTAAATTTATATGTTAGATATATTATAAA
AAAGGCTGACCAAGATGTTTGCATAATGGTTCACTATTCAAAAATGATAA
TTACCGGAGTTTGCAGCCGTCATTACTTTTAGTTCACAAACCTGGCAACA
AAAACCTTTTTGCTGAATCTGATCTTTCCGATATCCATGATAGCAAAGGT
TTCAGCAACGAGACAGGTCGCCAGGATAAACCTCGTACAGATTTCCGTGG
TCCCGCTATAATTCGCTCAGAAACTTCGAAAAAGCGATTACTTTACATAT
AATGATGTTCGGGACTTCTTTATATCATGTCAAGAGTCAAAGCACGTTTC
ACATATGGAAAGGAGTTTTTAATTGTGAGACTTCATCATGTTATGAGGAT
AAGGAGTGTGTATGTGTAATTTGGCTATCTCGCCAAAAGTATAACCATAT
CTTTTGGATTCTTTGCTTTAGACACGAGTTGATCGGAGTGTCAATTCTTT
TCATTTTACCATTGAACGCTAACTTGGTTTTAGATGCTAGGTAGACACCG
AACTTTAAGCTTACGTGTAGAAATAAGTGCATTATTTGGACAAGACAAAA
CAATAAATTTGCATTAATCTTTTGGAAATAAGAAAGGTCATAAATTTAAA
TTTGTCTCCAGATCCCATTCACGTTTTCATCATAATCTCTCAACAGGTTG
GTTCGAAGCGTGATGTCTTTCCCTTTATCGAGAACACAGTAATACACGCA
ACATACCCTCACGAATGGTACGCCAACCTTTCAAGTGTGTATGACAATGA
GACGGAGATCAAATATTTCCCTGGCAATCTCTACACCGAAGATCTTTACA
CCAAGATTGTGTCACCATTGAGTATAAGACAAGTCAGAGTGCACTCAAGT
GAGTTTATTTTCCGTTTCTTTCGATTTCAAAATCACCATGCCTGAGATTC
CTGATTTTTATAAGCAATGTAGCGCCCTCTCTCGAATGGACCGTAGTTTG
GGGTAAGATTCCAATACGACGATACGGTTATACAGAACAAGTATAAAAGA
ATGACAAAATGACAAAATGTTTTGAAATCCTTTATTTACATGCGCATAAT
AAAACAAATGTCGTTTGAGGCAAGATTCAACTTCCAGAACGAAAATCTTT
TTTTGGAAAGTTAGGCAGATTTTTACTTCAACACAAGATTTTCCGTACCT
TCAGAGAAAACTCTTTCCAATCTCATGCCGGATATCCCGGGAAATTAGCG
GACATTTTTGCAAAAGTTTGTTGATACTTAGTCTGTGAAGTGGAATCTTA
CCTTCAAACGATGGTTTGATTATGCGTGTGTAATTTCATAACTAGAGTAA
GTCGTCTATTTATTGACACATTTTTAGTCTACTGTATAACGCCATATTGC
AACCGAAAATGGTTTCTTTCATTTTCTTAACAATCGTAGAAACCCTTTGC
TTCCCAATATAAGGAAATTTTTTAAGTTGTTGATCATAATAACCGTACAG
CAATATATTTTCAAATCAATTTTTTTCATTTTTCTTTCCTCCCTACAGAG
CGTTGCGAAGATACAGTTGCAGATTATTTTGGTGCAGGGCATTTATGTTA
TGGACAGTACGGTATGATGCACCAACAGAAAGGAGACTACCACCATGAGT
GGAATGGAACAAGAAGTTACTCTTCCTCTTCTGAGGATGACATCATGTGG
AGGTGAGCTGCTAACTACACATTTCTTTTTATAAGAACATCCAAAATTTT
TGAAGCCTTCAAATGTTCTTAACCTTTTTGGTTTCAAGCCTAAAAATGTT
CTTGTTTTCTCCATTTTGTGACAATTTTGACCCATTTTCCTGAAGAATCG
GATGTTTTTGAGTCTGCAAAGCTTTAAAATTTTCTTAACTTGTTCTTAGC
ATTTTGGCCATCGAAGCCTTATGTTCTTATGTAGTTTGCTCTTCTAAAAA
AACGTGTAACCTCATTGAATCTAAAGTTGACGCTCTCTAACTCGACGCTA
TACTATTCGATACGCTCCATTATTCGATAATATTGAAAGTCATTGTCAAT
AAGAAAATCTCATAAACGACCTCTAAAATTCGATACCCTTACTTGTTATT
CGATGAAAATCCGATTCCCTTTGAAAATCGAATTAGAGAGCGTCAGCTAT
AGTGTCCTTTTAAATCTACCTTTAACGTCTGAACTGTTGGCAAATAGTCG
TCGGTAAAGTTGTTTTCTTTTTTGCCTGCAATGGTTCTATTACGTTCATT
ATAAGGCCAACTCTACCAAATTTACACAACAATGTTTTTTGTGTGTGATG
TCTCGGAAATCGAGGATTAAAAAGATAATTATGGTATTTTGCGCCAGTTT
CACTGCTAAGTCGGTTTTCATTCCATTTATATTACTAGATATCGTGATTC
AGAAGAGACAGGGAGTATGATGGTTCAAGGAGAACTGGGAATCTACCTTG
GCGGTGGATATTCGGTGCAGCTCTTTCCCAAACAAGACAACCATGAAATC
ATTGAGCATCTGTTAGATGATCACTGGATGAATCGCGGTACACGGGCTAT
ACTTATTACATTCAGTGTCTTCAATGGTGGTGTCAAATACTTCAGTAGCG
TTTCTTTACTGTTAGAGTTCCCCAACTCTGCAGGTGTTATCAAACAACAT
TCCATTTCAACTTTTAAAACCATCAAATACGCCAGGACTCAAACAAGAGT
TATCATCACCGAATTCTTTACCCTCCTTCTAATCTTGTATTATACGTTCA
TCAACCTGCGCAAAATCTTTCATCAACGATTCGGATATCTCGGCTCATTT
TGGAACTTGGTGGATTTTGCGATGGTAGTGAGCTCTATTTCCTCCATTGT
CATTCATTTTTATCGTTCAAGTATCGAAGCTCGCGTTTTATCACACGTGG
CAGGACGTCAGCCTAACGAATCTATCAGTTTCGCGGACGTCGGTTTTTGG
GGATACGGCTACACGCAATCGGTAGCTTGCGTCAATTTCTTTGCAACGAT
TCGTTTGATACGTCTACTACGTCTTAACAGGCGCACTTCTTTACTGGAGG
CTACTCTCATCAAAGCCAAAAAGTTCCTCTACTCATACGCTATAGTGTTT
GCCATCATGATGTCTGGCTTCATCATCTTTGCAACTATGTTGTTTCGGAC
TCGCATCTACGAGTACCGTAAACTGTCGAGTGCAGCTGCAGCAGTGATTC
GATTACTTCTTGGTAAATACAGCTTCAGCGATTACCAAGAAGCTCACTTG
TTACTTGGTCCTTTATTCTTCTTGATCTTCAACGTCACATGCAATTGGAT
CATGATCAACATGCTCATCTCCATCTTGGATGATGCGTCTCATGAAGTGA
AGCAAGAACGAGAAGACTTCATCAGTCAAGAAGCAGAAGCTATCAACTAC
TTTCTTGCACAACTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016497XLOC_016497Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029017-exon-sc0000720-1575043694:75341..75497TCONS_00029017-exon-sc0000720-1575043694:75341..75497Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1575043694:74716..74917TCONS_00029017-exon-sc0000720-1575043694:74716..74917Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1575043694:73571..73869TCONS_00029017-exon-sc0000720-1575043694:73571..73869Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1575043694:72695..73183TCONS_00029017-exon-sc0000720-1575043694:72695..73183Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1575043694:71650..71851TCONS_00029017-exon-sc0000720-1575043694:71650..71851Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1575043694:70846..70999TCONS_00029017-exon-sc0000720-1575043694:70846..70999Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1575043694:69129..70159TCONS_00029017-exon-sc0000720-1575043694:69129..70159Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1510915933:75341..75497TCONS_00029017-exon-sc0000720-1510915933:75341..75497Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1510915933:74716..74917TCONS_00029017-exon-sc0000720-1510915933:74716..74917Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1510915933:73571..73869TCONS_00029017-exon-sc0000720-1510915933:73571..73869Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1510915933:72695..73183TCONS_00029017-exon-sc0000720-1510915933:72695..73183Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1510915933:71650..71851TCONS_00029017-exon-sc0000720-1510915933:71650..71851Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1510915933:70846..70999TCONS_00029017-exon-sc0000720-1510915933:70846..70999Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1510915933:69129..70159TCONS_00029017-exon-sc0000720-1510915933:69129..70159Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1491911889:75341..75497TCONS_00029017-exon-sc0000720-1491911889:75341..75497Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1491911889:74716..74917TCONS_00029017-exon-sc0000720-1491911889:74716..74917Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1491911889:73571..73869TCONS_00029017-exon-sc0000720-1491911889:73571..73869Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1491911889:72695..73183TCONS_00029017-exon-sc0000720-1491911889:72695..73183Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1491911889:71650..71851TCONS_00029017-exon-sc0000720-1491911889:71650..71851Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1491911889:70846..70999TCONS_00029017-exon-sc0000720-1491911889:70846..70999Clytia hemisphaericaexon
TCONS_00029017-exon-sc0000720-1491911889:69129..70159TCONS_00029017-exon-sc0000720-1491911889:69129..70159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000720supercontigsc0000720:69129..75497 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0514508	0.436992	0.109865	0.139952	0.535027	0.497038	0	0.229579	0	0.276116	0.238025	0.203251	1.80132	1.76884	2.39228	3.31452	0.240556	0.541735	13.4737	16.8125	0.145498	0.0664027	0.253691	0.245926	0	0.193736	0.0732321	0.200971	0.169366	0.228048
Blast
[Close]
BLAST of TCONS_00029017 vs. Swiss-Prot (Human)
Match: PK2L1 (Polycystic kidney disease 2-like 1 protein OS=Homo sapiens GN=PKD2L1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.925e-34
Identity = 129/506 (25.49%), Postives = 234/506 (46.25%), Query Frame = 2 
Query:  971 LIEIALMFLFTFSVYFLGYHLHDEDAFLQTQSIREMLKVSLRPMSKARYKKAAVDSFVAVGSKRDVFPFIENTVIHATYPHEWYANLSSVYDNETEIKYFPGNLYTEDLYTKIVSPLSIRQVRVHSKRC---EDTVADYFGAGHLCYGQYGMMHQQKGDYHHEWNGTRSYSSSSEDDIMWRYRDSEETGSMMVQGELGIYLGGGYSVQL-FPKQDNHEIIEHLLDDHWMNRGTRAILITFSVFNGGVKYFSSVSLLLEFPNSAGVIKQHSISTFKTIKYARTQTR-VXXXXXXXXXXXXXXXXXNLRKIFHQRFGYLGSFWNLVDFAMXXXXXXXXXXHFYRSSIEARVLSHVAGRQPNESISFADVGFWGYGYTQSVACVNFFATIXXXXXXXXXXXXXXXEATLIKAKKFLYSYAIVFAIMMSGFIIFATMLFRTRIYEYRKLSSAAAAVIRLLLGKYSFSDYQEAHLLLGPLFFLIFNVTCNWIMINMLISILDDASHEVKQE 2473
            L E+ +  +F   +  L Y +    A+  T+ + E+    L   S          SF A+ S  D + F +  ++ + Y  +WY N S  + + + I       Y E++   ++    +RQ++V +  C   ED   D       CY  Y    +++  +   +NGT            W Y   +E G     G L  Y GGGY + L   +Q + E +  L +  W++RGTR + I FSV+N  +  F  + L++EFP + G I    I T K I+Y       ++  E    + I YY    + ++   R  YL S WN++D  +++ SI ++  H +R+    R++  +  +QPN    F  + FW   Y    A   FFA I++ + +  N+  + L +TL +  K +  +A++F I+   +     +LF T++  +           R++LG + ++    A+ +LGP +F+ +     ++++NM ++I++D   EVK+E
Sbjct:  101 LRELLVYIVFLVDICLLTYGMTSSSAYYYTKVMSELF---LHTPSDTGV------SFQAISSMADFWDFAQGPLLDSLYWTKWYNNQSLGHGSHSFI-------YYENM---LLGVPRLRQLKVRNDSCVVHEDFREDILS----CYDVYSPDKEEQLPFG-PFNGT-----------AWTYHSQDELGGFSHWGRLTSYSGGGYYLDLPGSRQGSAEALRALQEGLWLDRGTRVVFIDFSVYNANINLFCVLRLVVEFPATGGAIPSWQIRTVKLIRYVSNWDFFIVGCEVIFCVFIFYYVVEEILELHIHRLRYLSSIWNILDLVVILLSIVAVGFHIFRTLEVNRLMGKLL-QQPNTYADFEFLAFWQTQYNNMNAVNLFFAWIKIFKYISFNKTMTQLSSTLARCAKDILGFAVMFFIVFFAYAQLGYLLFGTQVENFSTFIKCIFTQFRIILGDFDYNAIDNANRILGPAYFVTYVFFVFFVLLNMFLAIINDTYSEVKEE 570
The following BLAST results are available for this feature:
BLAST of TCONS_00029017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PK2L12.925e-3425.49Polycystic kidney disease 2-like 1 protein OS=Homo... [more]
back to top