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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029016 ID=TCONS_00029016|Name=TCONS_00029016|organism=Clytia hemisphaerica|type=transcript|length=810bp
AAAGGCAAGAAACAAGCATGAGAAGCAGGTTCATGGGTACACAAGaAAAA
GGAAGGACAAACTTTCAACAAAACGAATGGATTGTGACGTTCTAAATAAA
ACAGACCACAAGTTGGCTTACCAAAAGGCATTATTTACAATGAATATGTT
ACTGAAAAACATCCATGATTGTATTAGAGAGGGTAAgtgaaatgagaaaa
aaagtgTATTTAAGATTAGTACCTGTTATCATTGTTCTAGACTTTAAATA
AGAAATGAGTAAAATGTAAAGGTTATGTTTTTTTCAGGTGATGGAGAACG
ACTCCTTGAAAGCTATAAATTTGCTTTATTGTACCTCAAGCACTACAACC
ACACAAAGTACAGTTTTGGCCTTCTGAAGCTGTTCACGGAGATTGAATAT
CACCCAGATCGTGCGCTTGGTTTGATATGGGGTCGATTTGTAAATACAAA
AGGTATGGATAACACTAAATGATATAAAACTATATGTAAATTAATGTCAT
ATAATAAAATAGACACCCTATCAGGGCTGAAAATAAGCGTCGGTTATCGG
TCAATGTCCAACTGATTAAGTCGTAAGACCGACAGAAAAATAGAAACTAG
ATTGTCAATTAAAAGCCCTACAAAAtactttatttcttttaaagGATATG
CTGGTCATAACATTTCAATGGATCTACATTTGGAACATTTAAATGGTTAT
CTCAAGGAGGGCTTCAGGGCACTGAGAAGCAATTTAAACCAGTCAAACGC
TGATCGAGTAGCTAAAACCCTCAACAATGTGAAAGATTTGATCCAGAATA
CTGAAAAAAG Run BLAST on NCBI transcript from alignment at sc0000720:3796..4985- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029016 ID=TCONS_00029016|Name=TCONS_00029016|organism=Clytia hemisphaerica|type=transcript|length=1190bp|location=Sequence derived from alignment at sc0000720:3796..4985- (Clytia hemisphaerica)
AAAGGCAAGAAACAAGCATGAGAAGCAGGTTCATGGGTACACAAGGTATA
TAAAGTTTGTTTTAAAATTGCTTAGTGTCAAGTAAAACAAACCAAATTAA
AAACTATTTAACTAAAAAATTATTAACTTCAAANCATAAAAAGGCAAGAA
ACAAGCATGAGAAGCAGGTTCATGGGTACACAAGGTATATAAAGTTTGTT
TTAAAATTGCTTAGTGTCAAGAAAAACAAACCAAATTAAAAACTATTTAA
CTAAAAAATAATTAACTTCAAAATCAAAATAGTTTCACACTTTTTATTTT
ACAGAAAAAGGAAGGACAAACTTTCAACAAAACGAATGGATTGTGACGTT
CTAAATAAAACAGACCACAAGTTGGCTTACCAAAAGGCATTATTTACAAT
GAATATGTTACTGAAAAACATCCATGATTGTATTAGAGAGGGTAAGTGAA
ATGAGAAAAAAAGTGTAGTTTAAGATCAGTACCTGTTATCATTGTTCTAG
ATTTTAAATAAGAAATGAGTAAAATGTAAAGGTTATGTTTTTTTCAGGTG
ATGGAGAACGACTCCTTGAAAGCTNAAAAAAAGTGTAGTTTAAGATTAGT
ACCTGTTATCATTGTTCTAGACTTTAAATAAGAAATGAGTAAAATGTAAA
GGTTATGTTTTTTTCAGGTGATGGAGAACGACTCCTTGAAAGCTATAAAT
TTGCTTTATTGTACCTCAAGCACTACAACCACACAAAGTACAGTTTTGGC
CTTCTGAAGCTGTTCACGGAGATTGAATATCACCCAGATCGTGCGCTTGG
TTTGATATGGGGTCGATTTGTAAATACAAAAGGTATGGATAACACTAAAT
GATATAAAACTATATGTAAATTAATGTCATATAATAAAATAGACACCCTA
TCAGGGCTGAAAATAAGCGTCGGTTATCGGTCAATGTCCAACTGATTAAG
TCGTAAGACCGACAGAAAAATAGAAACTAGATTGTCAATTAAAAGCCCTA
CAAAATACTTTATTTCTTTTAAAGGATATGCTGGTCATAACATTTCAATG
GATCTACATTTGGAACATTTAAATGGTTATCTCAAGGAGGGCTTCAGGGC
ACTGAGAAGCAATTTAAACCAGTCAAACGCTGATCGAGTAGCTAAAACCC
TCAACAATGTGAAAGATTTGATCCAGAATACTGAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029016-exon-sc0000720-1575043694:4941..4985 | TCONS_00029016-exon-sc0000720-1575043694:4941..4985 | Clytia hemisphaerica | exon |
| TCONS_00029016-exon-sc0000720-1575043694:4519..4681 | TCONS_00029016-exon-sc0000720-1575043694:4519..4681 | Clytia hemisphaerica | exon |
| TCONS_00029016-exon-sc0000720-1575043694:3796..4397 | TCONS_00029016-exon-sc0000720-1575043694:3796..4397 | Clytia hemisphaerica | exon |
| TCONS_00029016-exon-sc0000720-1510915933:4941..4985 | TCONS_00029016-exon-sc0000720-1510915933:4941..4985 | Clytia hemisphaerica | exon |
| TCONS_00029016-exon-sc0000720-1510915933:4519..4681 | TCONS_00029016-exon-sc0000720-1510915933:4519..4681 | Clytia hemisphaerica | exon |
| TCONS_00029016-exon-sc0000720-1510915933:3796..4397 | TCONS_00029016-exon-sc0000720-1510915933:3796..4397 | Clytia hemisphaerica | exon |
| TCONS_00029016-exon-sc0000720-1491911889:4941..4985 | TCONS_00029016-exon-sc0000720-1491911889:4941..4985 | Clytia hemisphaerica | exon |
| TCONS_00029016-exon-sc0000720-1491911889:4519..4681 | TCONS_00029016-exon-sc0000720-1491911889:4519..4681 | Clytia hemisphaerica | exon |
| TCONS_00029016-exon-sc0000720-1491911889:3796..4397 | TCONS_00029016-exon-sc0000720-1491911889:3796..4397 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000720 | supercontig | sc0000720:3796..4985 - |
Blast
The following BLAST results are available for this feature:
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