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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029013 ID=TCONS_00029013|Name=TCONS_00029013|organism=Clytia hemisphaerica|type=transcript|length=1318bp
aTTTGGAGGGAATCTAACCAATTTGATAATGTAGTGAGACACTAACAGAC
ACACATAAAATGGCATCAACAGAAACCATGCACTACGAGAATAACCGTCC
AGAACACAAAGTCTGTCCGAAGTATGGTTTACACAGTCACATGGTCAAAA
ACGATTACCGCGAACCGTTCATTGATAAAGGTTACCGTTGCGAGAACATG
AAAGCATGGGACTGCTTCAAGACCATGTTCGTTTTTAAATGTAACGAAAC
GTTCAACATCTGGACACATTTCTTACCCTTTGTTATATTCCTGATTAAGT
TTGTTTACATCTTCAATACTGAGCTGTCCATCCATGATTCCTTTTATTGG
CCACTAGCTGCTAATGCCATGGGTATTATGGGCTTTTGTTTGACAAGCGC
ATTAGCTCACATGTTCTGCGCTTTATCACTTCAAGCTCGACACACATGTT
TTTACACCGATTACGCAGCTATTAGTATTTATTCAGTTACCGCTTGGGAA
GCGACTTTCTTTTACGGTCGTTTAATATCTGACGGTGGATTCCCGTATTT
TGGAAACACTAGAGCCTCAATGTTGATTTGTTTAATCTTGTCTCTTATGA
GCACGATACAATGTTGCGCAACACGCCACGTTAAAAGTGCGCTACGTCAC
GCACTGCGTGTTGGTTCGTTTGTTATACCATGGATTTTCGCGGCCGGTCC
TTACATGCATCGAATGTTGACATGTGACTCGGAGCTCGATTGCCAGTACG
GAGCCTTCAGTAAGTTTATCAACCACGCCTTATTATACGTGACCGGTGCT
ATATTCATGGCAACAAAATATCCAGAGCGCTTGTTTCCTGGTAAGTTTGA
TGCAATCGGACAGAGTCACCAGATTATGCACCTGTGTACGGCTTTTGGAG
CCGACATTCAATTCGACTCCATCAAAACGGATATGTTAAGTCGTGAGGCT
GCGTTACGTCAACAGCCGTTGAACGACGGTTTTACGTCGGATTGCGTCTT
GTTTACGATAGTTATGGCCGTGAGTAACATGGCGGTGGCATTTGTGTTCA
ATAATTTTGTTGACATGATTAAGGaacaaaaagacacaaaaactGAATAA
CACCAACAAAAGAAACTAGGATGTCCGTGGTTTTAATAATATGAAGAATA
ctgaaaatggtcatttttgacACGTAAAATTCttcgaattttgattttta
aatcaatcaaaaagattttaatcacgattttcattattatttaaATTATT
TAAGATATGTAAATTATCTCtagaaaatgaggaaaaaaataattctaaaa
atcgAGAATCGATTCTCA Run BLAST on NCBI transcript from alignment at sc0000720:145174..146780+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029013 ID=TCONS_00029013|Name=TCONS_00029013|organism=Clytia hemisphaerica|type=transcript|length=1607bp|location=Sequence derived from alignment at sc0000720:145174..146780+ (Clytia hemisphaerica)
aTTTGGAGGGAATCTAACCAATTTGATAATGTAGTAAggtgtctttttta
tttttaaaaacaacatAGGGTCATTTTAAGAATAAAACTTTCACTGTTTG
GGCGGATATTAATCAAATGACAGGCCCGGCGGGGGAAGCGGGGagctccc
cacttttgagcaaatgaggttttctcaaattcctaccgaatttatctcat
tttgagccttcagcctccccctGTTACGGTTGTTCCACCGGGCCCGAATA
AAGTAAATGTTACAAGATAGGATTTTGATAATGTAGAACTTATGAAACTT
CTAACTTCTATTAATTTTCCAGGTGAGACACTAACAGACACACATAAAAT
GGCATCAACAGAAACCATGCACTACGAGAATAACCGTCCAGAACACAAAG
TCTGTCCGAAGTATGGTTTACACAGTCACATGGTCAAAAACGATTACCGC
GAACCGTTCATTGATAAAGGTTACCGTTGCGAGAACATGAAAGCATGGGA
CTGCTTCAAGACCATGTTCGTTTTTAAATGTAACGAAACGTTCAACATCT
GGACACATTTCTTACCCTTTGTTATATTCCTGATTAAGTTTGTTTACATC
TTCAATACTGAGCTGTCCATCCATGATTCCTTTTATTGGCCACTAGCTGC
TAATGCCATGGGTATTATGGGCTTTTGTTTGACAAGCGCATTAGCTCACA
TGTTCTGCGCTTTATCACTTCAAGCTCGACACACATGTTTTTACACCGAT
TACGCAGCTATTAGTATTTATTCAGTTACCGCTTGGGAAGCGACTTTCTT
TTACGGTCGTTTAATATCTGACGGTGGATTCCCGTATTTTGGAAACACTA
GAGCCTCAATGTTGATTTGTTTAATCTTGTCTCTTATGAGCACGATACAA
TGTTGCGCAACACGCCACGTTAAAAGTGCGCTACGTCACGCACTGCGTGT
TGGTTCGTTTGTTATACCATGGATTTTCGCGGCCGGTCCTTACATGCATC
GAATGTTGACATGTGACTCGGAGCTCGATTGCCAGTACGGAGCCTTCAGT
AAGTTTATCAACCACGCCTTATTATACGTGACCGGTGCTATATTCATGGC
AACAAAATATCCAGAGCGCTTGTTTCCTGGTAAGTTTGATGCAATCGGAC
AGAGTCACCAGATTATGCACCTGTGTACGGCTTTTGGAGCCGACATTCAA
TTCGACTCCATCAAAACGGATATGTTAAGTCGTGAGGCTGCGTTACGTCA
ACAGCCGTTGAACGACGGTTTTACGTCGGATTGCGTCTTGTTTACGATAG
TTATGGCCGTGAGTAACATGGCGGTGGCATTTGTGTTCAATAATTTTGTT
GACATGATTAAGGaacaaaaagacacaaaaactGAATAACACCAACAAAA
GAAACTAGGATGTCCGTGGTTTTAATAATATGAAGAATActgaaaatggt
catttttgacACGTAAAATTCttcgaattttgatttttaaatcaatcaaa
aagattttaatcacgattttcattattatttaaATTATTTAAGATATGTA
AATTATCTCtagaaaatgaggaaaaaaataattctaaaaatcgAGAATCG
ATTCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029013-exon-sc0000720-1491911889:145174..145206 | TCONS_00029013-exon-sc0000720-1491911889:145174..145206 | Clytia hemisphaerica | exon |
| TCONS_00029013-exon-sc0000720-1510915933:145174..145206 | TCONS_00029013-exon-sc0000720-1510915933:145174..145206 | Clytia hemisphaerica | exon |
| TCONS_00029013-exon-sc0000720-1575043694:145174..145206 | TCONS_00029013-exon-sc0000720-1575043694:145174..145206 | Clytia hemisphaerica | exon |
| TCONS_00029013-exon-sc0000720-1491911889:145496..146780 | TCONS_00029013-exon-sc0000720-1491911889:145496..146780 | Clytia hemisphaerica | exon |
| TCONS_00029013-exon-sc0000720-1510915933:145496..146780 | TCONS_00029013-exon-sc0000720-1510915933:145496..146780 | Clytia hemisphaerica | exon |
| TCONS_00029013-exon-sc0000720-1575043694:145496..146780 | TCONS_00029013-exon-sc0000720-1575043694:145496..146780 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000720 | supercontig | sc0000720:145174..146780 + |
Blast
BLAST of TCONS_00029013 vs. Swiss-Prot (Human)
Match: PAQR6 (Membrane progestin receptor delta OS=Homo sapiens GN=PAQR6 PE=1 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 4.483e-32 Identity = 97/322 (30.12%), Postives = 143/322 (44.41%), Query Frame = 3
Query: 129 LHSHMVKNDYREPFIDKGYRCENMKAWDCFKTMFVFKCNETFNIWTHFLPFVIFLIKFVYIFNTELSIHDSFYWPLAANAMGIMGFCLTSALAHMFCALSLQARHTCFYTDYAAISIYSVT--------AWEATFFYGRLISDGGFPYFGNTRAXXXXXXXXXXXXTIQCCATRHVK---SALRHALRVGSFVIPWIFAAGPYMHRMLTC-DSELDCQYGAFSKFINHALL--YVTGAIFMATKYPERLFPGKFDAIGQSHQIMHLCTAFGADIQFDSIKTDMLSREAALRQQPLNDGFTSDCVLFTIVMAVSNMAVAFVFN 1052
L H V + E I GYR A DC + F NET NIWTHFLP FL + + + + ++WPL + + S AH F ++S + RH C++ DY A+S+YS+ + A++ +G L +F A T C +R ++ L LR G+F P++F P +R+ C C A S + L +TG +F A+ PERL PG+FD IG SHQ+ H+C G Q +++ DM SR A L Q G + V ++ A N+ + F
Sbjct: 10 LQVHQVPRVFWEDGIMSGYRRPTSSALDCVLSSFQMT-NETVNIWTHFLPTWYFLWRLLALAGGPGFRAEPYHWPLLVFLLPACLYPFASCCAHTFSSMSPRMRHICYFLDYGALSLYSLGCAFPYAAYSMPASWLHGHLHQ-----FFVPAAALNSFLC------TGLSCYSRFLELESPGLSKVLRTGAFAYPFLFDNLPLFYRLGLCWGRGHGCGQEALSTSHGYHLFCALLTGFLF-ASHLPERLAPGRFDYIGHSHQLFHICAVLGTHFQLEAVLADMGSRRAWLATQEPALGL-AGTVATLVLAAAGNLLIIAAFT 317
The following BLAST results are available for this feature:
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