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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029005 ID=TCONS_00029005|Name=TCONS_00029005|organism=Clytia hemisphaerica|type=transcript|length=1035bp
GTTTTGTCAAGTGAGATTCAAAAAGGCTGACATGGATGCAAACAGATTCC
TGTGGAGAGACGATCCAAAGTCTCACAAACCTCCTGATCACTATAAATTA
ATCGTACACATTTTTGGGCTGACGGATTCTCCCTGTGCTGCGACCTATGC
CCTACAACGAGCTGCAATAGATCAAGCTAACGACTATCCACCCGAAGTCA
TCAAAGCTGTCTTGAGAAATTTATATGTCGATGACTTACTCATGTCATAT
TCAAATGCTACATCAGTCAAGGAGACCAGCCATGGTGTTATCAGTCTTCT
CAACAACAAAGGCTTCAACCTGACAAAGTTCCAAAGTAACGACGAATCCG
TTTTGAAGGACTTACCAACAGAAAAGCTTGCTACTCAACCTACTGGGATC
AAACTGTACGACAAGGTCATGTCTAGAGCACTAGGCGTTCACTGGGACCT
TGAAACAGATTGTTTTGTTTACAAGGTCAATGTTGAAGTTGATCGATCAA
AGCCATGTACCAAGAGATCCATCCTCAAGAAGACAGCGACTATCTACGAT
CCACTTGGCCTCTTGACATCAATCACACTTGTCGCCAAACTTTTCATGCA
AGAACTATGGAGAGATAAATTTGAATGGAACGAGAAAGTTTCCAAATCTC
TCAAAAATCGTTATGAAGATTGGCTTTGTCGAATGTCTGACATTGCATCC
ACTGTTGCTGTCCCACGAAGTCTCAACCTTGAAGGTGATCAAGACGTGCA
GCAACATATCTTTTGTGATGCTTCCGAGAAGGCATTTGCTGCGTTAGCTT
ATGTCAGGATCGAGATATATCCTATTGTCTAAGTCAAGAGTAGCTCCACT
GAAAAGATTGACGTTGCCAAGACTTGAATTGCAAGGAGCTGTCATTGCAG
TGAGAATGAAAGAAACCATCGTAGATGAAATTGATGTTCATTTCTCGTCT
ATTCGATTTTGGACAGACTCGTCACTCAATCTCCAGTACATCAACAACGA
AAGTAAATGTTTCTAGGTTTTTGTTGCAAACCGAG Run BLAST on NCBI protein sequence of TCONS_00029005-protein >TCONS_00029005-protein ID=TCONS_00029005-protein|Name=TCONS_00029005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
FCQVRFKKADMDANRFLWRDDPKSHKPPDHYKLIVHIFGLTDSPCAATYA
LQRAAIDQANDYPPEVIKAVLRNLYVDDLLMSYSNATSVKETSHGVISLL
NNKGFNLTKFQSNDESVLKDLPTEKLATQPTGIKLYDKVMSRALGVHWDL
ETDCFVYKVNVEVDRSKPCTKRSILKKTATIYDPLGLLTSITLVAKLFMQ
ELWRDKFEWNEKVSKSLKNRYEDWLCRMSDIASTVAVPRSLNLEGDQDVQ
QHIFCDASEKAFAALAYVRIEIYPIV Run BLAST on NCBI transcript from alignment at sc0000719:88404..89438 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029005 ID=TCONS_00029005|Name=TCONS_00029005|organism=Clytia hemisphaerica|type=transcript|length=1035bp|location=Sequence derived from alignment at sc0000719:88404..89438 (Clytia hemisphaerica)
CTCGGTTTGCAACAAAAACCTAGAAACATTTACTTTCGTTGTTGATGTAC
TGGAGATTGAGTGACGAGTCTGTCCAAAATCGAATAGACGAGAAATGAAC
ATCAATTTCATCTACGATGGTTTCTTTCATTCTCACTGCAATGACAGCTC
CTTGCAATTCAAGTCTTGGCAACGTCAATCTTTTCAGTGGAGCTACTCTT
GACTTAGACAATAGGATATATCTCGATCCTGACATAAGCTAACGCAGCAA
ATGCCTTCTCGGAAGCATCACAAAAGATATGTTGCTGCACGTCTTGATCA
CCTTCAAGGTTGAGACTTCGTGGGACAGCAACAGTGGATGCAATGTCAGA
CATTCGACAAAGCCAATCTTCATAACGATTTTTGAGAGATTTGGAAACTT
TCTCGTTCCATTCAAATTTATCTCTCCATAGTTCTTGCATGAAAAGTTTG
GCGACAAGTGTGATTGATGTCAAGAGGCCAAGTGGATCGTAGATAGTCGC
TGTCTTCTTGAGGATGGATCTCTTGGTACATGGCTTTGATCGATCAACTT
CAACATTGACCTTGTAAACAAAACAATCTGTTTCAAGGTCCCAGTGAACG
CCTAGTGCTCTAGACATGACCTTGTCGTACAGTTTGATCCCAGTAGGTTG
AGTAGCAAGCTTTTCTGTTGGTAAGTCCTTCAAAACGGATTCGTCGTTAC
TTTGGAACTTTGTCAGGTTGAAGCCTTTGTTGTTGAGAAGACTGATAACA
CCATGGCTGGTCTCCTTGACTGATGTAGCATTTGAATATGACATGAGTAA
GTCATCGACATATAAATTTCTCAAGACAGCTTTGATGACTTCGGGTGGAT
AGTCGTTAGCTTGATCTATTGCAGCTCGTTGTAGGGCATAGGTCGCAGCA
CAGGGAGAATCCGTCAGCCCAAAAATGTGTACGATTAATTTATAGTGATC
AGGAGGTTTGTGAGACTTTGGATCGTCTCTCCACAGGAATCTGTTTGCAT
CCATGTCAGCCTTTTTGAATCTCACTTGACAAAAC Coding sequence (CDS) from alignment at sc0000719:88404..89438 >TCONS_00029005 ID=TCONS_00029005|Name=TCONS_00029005|organism=Clytia hemisphaerica|type=CDS|length=831bp|location=Sequence derived from alignment at sc0000719:88404..89438 (Clytia hemisphaerica)
TTAGACAATAGGATATATCTCGATCCTGACATAAGCTAACGCAGCAAATG
CCTTCTCGGAAGCATCACAAAAGATATGTTGCTGCACGTCTTGATCACCT
TCAAGGTTGAGACTTCGTGGGACAGCAACAGTGGATGCAATGTCAGACAT
TCGACAAAGCCAATCTTCATAACGATTTTTGAGAGATTTGGAAACTTTCT
CGTTCCATTCAAATTTATCTCTCCATAGTTCTTGCATGAAAAGTTTGGCG
ACAAGTGTGATTGATGTCAAGAGGCCAAGTGGATCGTAGATAGTCGCTGT
CTTCTTGAGGATGGATCTCTTGGTACATGGCTTTGATCGATCAACTTCAA
CATTGACCTTGTAAACAAAACAATCTGTTTCAAGGTCCCAGTGAACGCCT
AGTGCTCTAGACATGACCTTGTCGTACAGTTTGATCCCAGTAGGTTGAGT
AGCAAGCTTTTCTGTTGGTAAGTCCTTCAAAACGGATTCGTCGTTACTTT
GGAACTTTGTCAGGTTGAAGCCTTTGTTGTTGAGAAGACTGATAACACCA
TGGCTGGTCTCCTTGACTGATGTAGCATTTGAATATGACATGAGTAAGTC
ATCGACATATAAATTTCTCAAGACAGCTTTGATGACTTCGGGTGGATAGT
CGTTAGCTTGATCTATTGCAGCTCGTTGTAGGGCATAGGTCGCAGCACAG
GGAGAATCCGTCAGCCCAAAAATGTGTACGATTAATTTATAGTGATCAGG
AGGTTTGTGAGACTTTGGATCGTCTCTCCACAGGAATCTGTTTGCATCCA
TGTCAGCCTTTTTGAATCTCACTTGACAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029005-exon-sc0000719-1491911889:88404..89438 | TCONS_00029005-exon-sc0000719-1491911889:88404..89438 | Clytia hemisphaerica | exon |
| TCONS_00029005-exon-sc0000719-1510915933:88404..89438 | TCONS_00029005-exon-sc0000719-1510915933:88404..89438 | Clytia hemisphaerica | exon |
| TCONS_00029005-exon-sc0000719-1575043694:88404..89438 | TCONS_00029005-exon-sc0000719-1575043694:88404..89438 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000719 | supercontig | sc0000719:88404..89438 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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