TCONS_00028969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028969
Unique NameTCONS_00028969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028969 ID=TCONS_00028969|Name=TCONS_00028969|organism=Clytia hemisphaerica|type=transcript|length=280bp
GAACTCATTACGGCTGATCAACTCAAGCACCGAAAAAATCAAAGAGCTAC
GCCTTCAATATCGGTCCATCCACAAAACCATTGCTGCATTGATGGATCCC
AAGAAATACCAAACAAATTATCAACCGTTCTACACAGACATCACACATCA
AGTGGTAGTGTATTTGCAGCAATTGAACATTCTCACTGAAGCTCATCATT
CGGCAGAGGTCAATGCTGCCACTCAGATCTCAACCAACCAAGCGTGTCTT
TTAATTGACGAAATTGATCGCACAATCACT
Run BLAST on NCBI

transcript from alignment at sc0000716:165841..166120

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028969 ID=TCONS_00028969|Name=TCONS_00028969|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at sc0000716:165841..166120 (Clytia hemisphaerica)
AGTGATTGTGCGATCAATTTCGTCAATTAAAAGACACGCTTGGTTGGTTG
AGATCTGAGTGGCAGCATTGACCTCTGCCGAATGATGAGCTTCAGTGAGA
ATGTTCAATTGCTGCAAATACACTACCACTTGATGTGTGATGTCTGTGTA
GAACGGTTGATAATTTGTTTGGTATTTCTTGGGATCCATCAATGCAGCAA
TGGTTTTGTGGATGGACCGATATTGAAGGCGTAGCTCTTTGATTTTTTCG
GTGCTTGAGTTGATCAGCCGTAATGAGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016458XLOC_016458Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028969-exon-sc0000716-1491911889:165841..166120TCONS_00028969-exon-sc0000716-1491911889:165841..166120Clytia hemisphaericaexon
TCONS_00028969-exon-sc0000716-1510915933:165841..166120TCONS_00028969-exon-sc0000716-1510915933:165841..166120Clytia hemisphaericaexon
TCONS_00028969-exon-sc0000716-1575043694:165841..166120TCONS_00028969-exon-sc0000716-1575043694:165841..166120Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000716supercontigsc0000716:165841..166120 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.38044	3.33508	1.53139	0.691565	0	0.000237348	0	0.595032	0.575703	0.0741005	1.00173	0.658495	0.738933	1.36581	0.994613	0	0.662712	0	0.759746	0.549925	1.1153	0.699433	0	0.990863	0	1.72265	0	0	1.93661	4.50806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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