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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028950 ID=TCONS_00028950|Name=TCONS_00028950|organism=Clytia hemisphaerica|type=transcript|length=1078bp
TCATTACGAAAAACATATTCTTCTACATCGATTCAATCACGACTGGTTTG
CAAGCTACTTCGTTGTCCATCGTCGAGGCTTATTTAGAAATAACTAATGT
CATCGAAACTTTAGAAGGAGTCAAACTTAATGTCAACAAATACCATAAAA
AATGGTATACCGAAGCTGTCGAGCTGGCTGCAAAGATTGGAATCAATCCG
AAGTGTCCTCGTGTTGTTTGTGGTGTTAGCATGAATCGAGATAGTACACC
TTCCAACACCGAAGAAGAATACTTCAGGAGAACAATCACCATTAGATGCC
TAAACGAGGTTATAAATGATTTACGAGAGAGGTTTGACGCAAACTCTATT
GGTGTAATCGATGGCTTCTATTGCATTCCATCCGTAATGGCAGTCAAAAC
AGACTGGAAGCTTCATCTTAGAAAATTTATGATGAAGTACAAAAAGGATA
TGCCTGACTTAAGCACTGCGGAATCGGAAATCCATCGTTGGGAAACGACA
TGGTTGAAGGGAAGTCAGGATGATACTTTACCATCCACAATTGAAGGAAC
AATGAAAACAATGCTTACAACCATGTTTCCTAACATATACCAAACTCTTA
TCATATTGGCTGTTGTACCTGTCACCACGTGCTCGTGCGAAAGAAGTATA
TCCACGTTAAAACGAGTAAAAAATTACTTGAGGAATTCCTGTGGTCAGAT
TGGTTGGTTTGGTGTTATTGCATATGAATAAAGAAATGGATATCGACATC
GATGAAATTATAAACAGACTTGCAATCAAATATCCTAAGCGGATGAAAAT
GTCGCATTTACTCGACGATGATTGATGCTATGCTTGCTACATATGAACAA
AATAACGTTTTACTGAAAACTTTCTAGAGCTATAATGACTGAGGTCAAAT
ATTATCGAAGCGTTTGACACCTTTTAACAGtctatattttcaaataaaaa
tttagacGATGATAATTCATAACTTTCCCtgattattttgaattaaaatg
caacttttgataaatacttGAAACGCACAAAAAATAAGGTATATTCTAAA
ATAGATATTTATTGAATAATATATTCAC Run BLAST on NCBI transcript from alignment at sc0000716:81690..83460- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028950 ID=TCONS_00028950|Name=TCONS_00028950|organism=Clytia hemisphaerica|type=transcript|length=1771bp|location=Sequence derived from alignment at sc0000716:81690..83460- (Clytia hemisphaerica)
TCATTACGAAAAACATATTCTTCTACATCGATTCAATCACGACTGGTTTG
CAAGGTAACTACTAGTATGTTTATGTAAAAACGATTATTTGCTAGAAGTA
TGGGGCACGTCGTTAAACTTTGGTTATTGTATGGTAATAGCAAAGTTCGG
AGGGGGTTGCTACCCTCTCCCTTTCTTCGCAGTTTTTCGCTCCCTCTAGC
GAAAATTTTCAACCCCCTACCTCTTTGGTAATTTTGGGAAGTTGCTACCC
TTATAAAAGGGGGTGAGAACTTATGCTATAGTAGTAATCAAATTCCATTC
ATTTCCAAGTTCTCGAAATAACTACTAGTTGCTAATTTTTTCATCCTTTC
TTTTTTCTCTCCTAACAGCTACTTCGTTGTCCATCGTCGAGGCTTATTTA
GAAATAACTAATGTCATCGAAACTTTAGAAGGAGTCAAACTTAATGTCAA
CAAATACCATAAAAAATGGTATACCGAAGCTGTCGAGCTGGCTGCAAAGA
TTGGAATCAATCCGAAGTGTCCTCGTGTTGTTTGTGGTGTTAGCATGAAT
CGAGATAGTACACCTTCCAACACCGAAGAAGAATACTTCAGGAGAACAAT
CACCATTAGATGCCTAAACGAGGTATTTCATTGATTTAGCTATTTGGTTT
CAAAGAAAATGAAAATTGCCTGATTATAGAATGGTTGAATTCTCCTCTCC
TAACAACAAATTTGTATTTTCCAAATTTAGCAATTATTCCCGTTTGTAGA
GGTGAATATGATTATGTTAGGGGAGTTAGGGGAGTATATGATTAATAATA
TCTATCACCTTTATTGTTTTCAGGTTATAAATGATTTACGAGAGAGGTTT
GACGCAAACTCTATTGGTGTAATCGATGGCTTCTATTGCATTCCATCCGT
AATGGCAGTCAAAACAGACTGGAAGCTTCATCTTAGAAAATTTATGATGA
AGTACAAAAAGGATATGCCTGACTTAAGCACTGCGGAATCGGAAATCCAT
CGTTGGGAAACGACATGGTTGAAGGGAAGTCAGGATGATACTTTACCATC
CACAATTGAAGGAACAATGAAAACAATGCTTACAACCATGTTTCCTAACA
TATACCAAACTCTTATCATATTGGCTGTTGTACCTGTCACCACGTGCTCG
TGCGAAAGAAGTATATCCACGTTAAAACGAGTAAAAAATTACTTGAGGAA
TTCCTGTGGTCAGGTAAAGAAAATTCTAAGCTTTTTCAAATTATTTGAAA
TTTGATACATCAGAAAATCTGGAAAATTTGAAAATAAGAAAAATAAGAAA
ACCAAAAGTCGAAGTGTGTTGCATATATTAGTTCCATTTGATTAGTTCTG
CCAGTGGTTGAATTTTTATCTTTATTTATCTTTCAGGACAGATTGGTTGG
TTTGGTGTTATTGCATATGAATAAAGAAATGGATATCGACATCGATGAAA
TTATAAACAGACTTGCAATCAAATATCCTAAGCGGATGAAAATGTCGCAT
TTACTCGACGATGATTGATGCTATGCTTGCTACATATGAACAAAATAACG
TTTTACTGAAAACTTTCTAGAGCTATAATGACTGAGGTCAAATATTATCG
AAGCGTTTGACACCTTTTAACAGTCTATATTTTCAAATAAAAATTTAGAC
GATGATAATTCATAACTTTCCCTGATTATTTTGAATTAAAATGCAACTTT
TGATAAATACTTGAAACGCACAAAAAATAAGGTATATTCTAAAATAGATA
TTTATTGAATAATATATTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028950-exon-sc0000716-1575043694:83407..83460 | TCONS_00028950-exon-sc0000716-1575043694:83407..83460 | Clytia hemisphaerica | exon |
| TCONS_00028950-exon-sc0000716-1575043694:82839..83092 | TCONS_00028950-exon-sc0000716-1575043694:82839..83092 | Clytia hemisphaerica | exon |
| TCONS_00028950-exon-sc0000716-1575043694:82248..82637 | TCONS_00028950-exon-sc0000716-1575043694:82248..82637 | Clytia hemisphaerica | exon |
| TCONS_00028950-exon-sc0000716-1575043694:81690..82069 | TCONS_00028950-exon-sc0000716-1575043694:81690..82069 | Clytia hemisphaerica | exon |
| TCONS_00028950-exon-sc0000716-1510915933:83407..83460 | TCONS_00028950-exon-sc0000716-1510915933:83407..83460 | Clytia hemisphaerica | exon |
| TCONS_00028950-exon-sc0000716-1510915933:82839..83092 | TCONS_00028950-exon-sc0000716-1510915933:82839..83092 | Clytia hemisphaerica | exon |
| TCONS_00028950-exon-sc0000716-1510915933:82248..82637 | TCONS_00028950-exon-sc0000716-1510915933:82248..82637 | Clytia hemisphaerica | exon |
| TCONS_00028950-exon-sc0000716-1510915933:81690..82069 | TCONS_00028950-exon-sc0000716-1510915933:81690..82069 | Clytia hemisphaerica | exon |
| TCONS_00028950-exon-sc0000716-1491911889:83407..83460 | TCONS_00028950-exon-sc0000716-1491911889:83407..83460 | Clytia hemisphaerica | exon |
| TCONS_00028950-exon-sc0000716-1491911889:82839..83092 | TCONS_00028950-exon-sc0000716-1491911889:82839..83092 | Clytia hemisphaerica | exon |
| TCONS_00028950-exon-sc0000716-1491911889:82248..82637 | TCONS_00028950-exon-sc0000716-1491911889:82248..82637 | Clytia hemisphaerica | exon |
| TCONS_00028950-exon-sc0000716-1491911889:81690..82069 | TCONS_00028950-exon-sc0000716-1491911889:81690..82069 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000716 | supercontig | sc0000716:81690..83460 - |
Blast
BLAST of TCONS_00028950 vs. Swiss-Prot (Human)
Match: P52K (52 kDa repressor of the inhibitor of the protein kinase OS=Homo sapiens GN=THAP12 PE=1 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 1.524e-25 Identity = 65/230 (28.26%), Postives = 109/230 (47.39%), Query Frame = 3
Query: 3 ITKNIFFYIDSITTGLQATSLSIVEAYLEITNVIETLEGVKLNVNKYHKKWYTEAVELAAKIGINPKCP-RVVCGVSMNRDSTPSNTEEEYFRRTITIRCLNEVINDLRERFDANSIGVIDGFYCIPSVMAVKTDWKLHLRKFMMKYKKDMPDLSTAESEIHRWETTWLKGSQDDTLPSTIEGTMKTMLTTMFPNIYQTLIILAVVPVTTCSCERSISTLKRVKNYLRNS 689
+ KN+ + + LQ + + A +T V+ +L V N+ YH+ W+ EA LA K+ I K P + N +S T E Y++ T+++ + +I +L++ F + + +PSVM + + Y+ D+P+ T +E+H W W +D LPSTI + FPN+Y L +L ++PV ER + KR+K YLRN+
Sbjct: 485 VLKNVLSFTRAFGKNLQGQTSDVFFAAGSLTAVLHSLNEVMENIEVYHEFWFEEATNLATKLDIQMKLPGKFRRAHQGNLESQL--TSESYYKETLSVPTVEHIIQELKDIFSEQHLKALKCLSLVPSVMG-QLKFNTSEEHHADMYRSDLPNPDTLSAELHCWRIKWKHRGKDIELPSTIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENGRKRLKAYLRNT 711
The following BLAST results are available for this feature:
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