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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028948 ID=TCONS_00028948|Name=TCONS_00028948|organism=Clytia hemisphaerica|type=transcript|length=1090bp
CTTTGTAACGtcgaaaaataacgaaaacaaTCCCGAAATCAAAATGGTCG
ATTCGATTATGTTGAACCCCAACAGCTACAAAAATATAGAATCGATACTT
TCAGAATTGAAAATCATTGCTGgaatcgGCAAACAACGAGAATGGGTTTT
TTTGGGTTGTGATGGACCTCCGTATTGTCTCTCTGAGCGGATTATATCGA
AGAACACAAAGTTTGATTTTGCTGCAATGACCCCTGGCCTAGGACATCTG
CACATGAATCAACAAAAAACCATTTTAAAGATACTCGACGAAATAATCTT
GGAGCCACTTGCCAAAGATGTCCTTAACTTCAATTCGCAGGCGGCTTATC
AAGTTTTTGTTGATTCAAAAGATACGCATAAATCTTGGCAAGCTATTCAA
GTACTCTTGGTCGGGACAACCCTAGAGCTCGTTCGTCTATTCAAATCAAC
CAACCCTGCAGCTAAAACCCCGATTGGTTTCCTAAATTGGATAAGTTACA
ACGAAAACGTAACATTAAAGATGATCGGAAATCTCATCCTGACATATGTA
CTAGCCATCTATTTATTCAAGGCAGGCGTTCGCAGCAACGACGTTATATT
GATCAACGCCGCGAGATACAAATTTGATGATCTATTTTATGCCTTCCCTC
ATCCTATCTACAGGGAAGTTGAATATCGTGACCTGAAAAACCGCGTCAAT
TATAAGCCAGAAGTACGAAAGGTTCGAGATGAAAATATGTCTTTCAGTGA
GAGTAAAAACAAGCTCAAAAGTCAAGGCGGTGACTTTATATTGGAGGGAA
AAGTTAAAAGACAGAAACTACTTGCCCCAAATGGTCCAGTAAAAGCAGAC
ACGTGGAAAACTTTGGCTCGTTGTCTTGACGAGTTTGAAGAAATTTACTC
AActtcaaacaaatttttgaatatCAAATCGTCAGAGGAAAAATCTCTTG
ACCTTAAATCGGAAATATCTATTTGGCAGTCTGTTCTGAGATCCTCAAAG
TTTCTGGTCgcagaaaatttttcgaactctcctaagaatatttttggtga
AATCCTTTCTGAGGAGCTTGTGAATCTTCCTGACAATGCA Run BLAST on NCBI protein sequence of TCONS_00028948-protein >TCONS_00028948-protein ID=TCONS_00028948-protein|Name=TCONS_00028948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
FVTSKNNENNPEIKMVDSIMLNPNSYKNIESILSELKIIAGIGKQREWVF
LGCDGPPYCLSERIISKNTKFDFAAMTPGLGHLHMNQQKTILKILDEIIL
EPLAKDVLNFNSQAAYQVFVDSKDTHKSWQAIQVLLVGTTLELVRLFKST
NPAAKTPIGFLNWISYNENVTLKMIGNLILTYVLAIYLFKAGVRSNDVIL
INAARYKFDDLFYAFPHPIYREVEYRDLKNRVNYKPEVRKVRDENMSFSE
SKNKLKSQGGDFILEGKVKRQKLLAPNGPVKADTWKTLARCLDEFEEIYS
TSNKFLNIKSSEEKSLDLKSEISIWQSVLRSSKFLVAENFSNSPKNIFGE
ILSEELVNLPDNA Run BLAST on NCBI transcript from alignment at sc0000716:31411..32705+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028948 ID=TCONS_00028948|Name=TCONS_00028948|organism=Clytia hemisphaerica|type=transcript|length=1295bp|location=Sequence derived from alignment at sc0000716:31411..32705+ (Clytia hemisphaerica)
CTTTGTAACGtcgaaaaataacgaaaacaaTCCCGAAATCAAAATGGTCG
ATTCGATTATGTTGAACCCCAACAGCTACAAAAATATAGAATCGATACTT
TCAGAATTGAAAATCATTGCTGGTATATATTTAAATTCTTTAGTTCTAAT
TCATTTTGACGAAATAAAGGGGCTTCTTTGTATACATCAGATTCCGTGAT
TTTTGCTTCCCAATGGTTTTcccgaatgtttttatttggcCTACCGGTTC
ATCTAAACGTGTTTAATATGTCCAGCCTAAAAGATAGCTATTATCGATTC
ACTTgttatctttaatttttttttcaggaatcgGCAAACAACGAGAATGG
GTTTTTTTGGGTTGTGATGGACCTCCGTATTGTCTCTCTGAGCGGATTAT
ATCGAAGAACACAAAGTTTGATTTTGCTGCAATGACCCCTGGCCTAGGAC
ATCTGCACATGAATCAACAAAAAACCATTTTAAAGATACTCGACGAAATA
ATCTTGGAGCCACTTGCCAAAGATGTCCTTAACTTCAATTCGCAGGCGGC
TTATCAAGTTTTTGTTGATTCAAAAGATACGCATAAATCTTGGCAAGCTA
TTCAAGTACTCTTGGTCGGGACAACCCTAGAGCTCGTTCGTCTATTCAAA
TCAACCAACCCTGCAGCTAAAACCCCGATTGGTTTCCTAAATTGGATAAG
TTACAACGAAAACGTAACATTAAAGATGATCGGAAATCTCATCCTGACAT
ATGTACTAGCCATCTATTTATTCAAGGCAGGCGTTCGCAGCAACGACGTT
ATATTGATCAACGCCGCGAGATACAAATTTGATGATCTATTTTATGCCTT
CCCTCATCCTATCTACAGGGAAGTTGAATATCGTGACCTGAAAAACCGCG
TCAATTATAAGCCAGAAGTACGAAAGGTTCGAGATGAAAATATGTCTTTC
AGTGAGAGTAAAAACAAGCTCAAAAGTCAAGGCGGTGACTTTATATTGGA
GGGAAAAGTTAAAAGACAGAAACTACTTGCCCCAAATGGTCCAGTAAAAG
CAGACACGTGGAAAACTTTGGCTCGTTGTCTTGACGAGTTTGAAGAAATT
TACTCAActtcaaacaaatttttgaatatCAAATCGTCAGAGGAAAAATC
TCTTGACCTTAAATCGGAAATATCTATTTGGCAGTCTGTTCTGAGATCCT
CAAAGTTTCTGGTCgcagaaaatttttcgaactctcctaagaatattttt
ggtgaAATCCTTTCTGAGGAGCTTGTGAATCTTCCTGACAATGCA Coding sequence (CDS) from alignment at sc0000716:31411..32705+ >TCONS_00028948 ID=TCONS_00028948|Name=TCONS_00028948|organism=Clytia hemisphaerica|type=CDS|length=2178bp|location=Sequence derived from alignment at sc0000716:31411..32705+ (Clytia hemisphaerica)
TTTGTAACGtcgaaaaataacgaaaacaaTCCCGAAATCAAAATGGTCGA
TTCGATTATGTTGAACCCCAACAGCTACAAAAATATAGAATCGATACTTT
CAGAATTGAAAATCATTGCTGgaatcgGCAAACAACGAGAATGGGTTTTT
TTGGGTTGTGATGGACCTCCGTATTGTCTCTCTGAGCGGATTATATCGAA
GAACACAAAGTTTGATTTTGCTGCAATGACCCCTGGCCTAGGACATCTGC
ACATGAATCAACAAAAAACCATTTTAAAGATACTCGACGAAATAATCTTG
GAGCCACTTGCCAAAGATGTCCTTAACTTCAATTCGCAGGCGGCTTATCA
AGTTTTTGTTGATTCAAAAGATACGCATAAATCTTGGCAAGCTATTCAAG
TACTCTTGGTCGGGACAACCCTAGAGCTCGTTCGTCTATTCAAATCAACC
AACCCTGCAGCTAAAACCCCGATTGGTTTCCTAAATTGGATAAGTTACAA
CGAAAACGTAACATTAAAGATGATCGGAAATCTCATCCTGACATATGTAC
TAGCCATCTATTTATTCAAGGCAGGCGTTCGCAGCAACGACGTTATATTG
ATCAACGCCGCGAGATACAAATTTGATGATCTATTTTATGCCTTCCCTCA
TCCTATCTACAGGGAAGTTGAATATCGTGACCTGAAAAACCGCGTCAATT
ATAAGCCAGAAGTACGAAAGGTTCGAGATGAAAATATGTCTTTCAGTGAG
AGTAAAAACAAGCTCAAAAGTCAAGGCGGTGACTTTATATTGGAGGGAAA
AGTTAAAAGACAGAAACTACTTGCCCCAAATGGTCCAGTAAAAGCAGACA
CGTGGAAAACTTTGGCTCGTTGTCTTGACGAGTTTGAAGAAATTTACTCA
ActtcaaacaaatttttgaatatCAAATCGTCAGAGGAAAAATCTCTTGA
CCTTAAATCGGAAATATCTATTTGGCAGTCTGTTCTGAGATCCTCAAAGT
TTCTGGTCgcagaaaatttttcgaactctcctaagaatatttttggtgaA
ATCCTTTCTGAGGAGCTTGTGAATCTTCCTGACAATGCATTTGTAACGtc
gaaaaataacgaaaacaaTCCCGAAATCAAAATGGTCGATTCGATTATGT
TGAACCCCAACAGCTACAAAAATATAGAATCGATACTTTCAGAATTGAAA
ATCATTGCTGgaatcgGCAAACAACGAGAATGGGTTTTTTTGGGTTGTGA
TGGACCTCCGTATTGTCTCTCTGAGCGGATTATATCGAAGAACACAAAGT
TTGATTTTGCTGCAATGACCCCTGGCCTAGGACATCTGCACATGAATCAA
CAAAAAACCATTTTAAAGATACTCGACGAAATAATCTTGGAGCCACTTGC
CAAAGATGTCCTTAACTTCAATTCGCAGGCGGCTTATCAAGTTTTTGTTG
ATTCAAAAGATACGCATAAATCTTGGCAAGCTATTCAAGTACTCTTGGTC
GGGACAACCCTAGAGCTCGTTCGTCTATTCAAATCAACCAACCCTGCAGC
TAAAACCCCGATTGGTTTCCTAAATTGGATAAGTTACAACGAAAACGTAA
CATTAAAGATGATCGGAAATCTCATCCTGACATATGTACTAGCCATCTAT
TTATTCAAGGCAGGCGTTCGCAGCAACGACGTTATATTGATCAACGCCGC
GAGATACAAATTTGATGATCTATTTTATGCCTTCCCTCATCCTATCTACA
GGGAAGTTGAATATCGTGACCTGAAAAACCGCGTCAATTATAAGCCAGAA
GTACGAAAGGTTCGAGATGAAAATATGTCTTTCAGTGAGAGTAAAAACAA
GCTCAAAAGTCAAGGCGGTGACTTTATATTGGAGGGAAAAGTTAAAAGAC
AGAAACTACTTGCCCCAAATGGTCCAGTAAAAGCAGACACGTGGAAAACT
TTGGCTCGTTGTCTTGACGAGTTTGAAGAAATTTACTCAActtcaaacaa
atttttgaatatCAAATCGTCAGAGGAAAAATCTCTTGACCTTAAATCGG
AAATATCTATTTGGCAGTCTGTTCTGAGATCCTCAAAGTTTCTGGTCgca
gaaaatttttcgaactctcctaagaatatttttggtgaAATCCTTTCTGA
GGAGCTTGTGAATCTTCCTGACAATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028948-exon-sc0000716-1491911889:31411..31532 | TCONS_00028948-exon-sc0000716-1491911889:31411..31532 | Clytia hemisphaerica | exon |
| TCONS_00028948-exon-sc0000716-1510915933:31411..31532 | TCONS_00028948-exon-sc0000716-1510915933:31411..31532 | Clytia hemisphaerica | exon |
| TCONS_00028948-exon-sc0000716-1575043694:31411..31532 | TCONS_00028948-exon-sc0000716-1575043694:31411..31532 | Clytia hemisphaerica | exon |
| TCONS_00028948-exon-sc0000716-1491911889:31738..32705 | TCONS_00028948-exon-sc0000716-1491911889:31738..32705 | Clytia hemisphaerica | exon |
| TCONS_00028948-exon-sc0000716-1510915933:31738..32705 | TCONS_00028948-exon-sc0000716-1510915933:31738..32705 | Clytia hemisphaerica | exon |
| TCONS_00028948-exon-sc0000716-1575043694:31738..32705 | TCONS_00028948-exon-sc0000716-1575043694:31738..32705 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000716 | supercontig | sc0000716:31411..32705 + |
Blast
The following BLAST results are available for this feature:
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