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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028939 ID=TCONS_00028939|Name=TCONS_00028939|organism=Clytia hemisphaerica|type=transcript|length=1258bp
tcaaAAGACCATGCTTGAAATTATTAAGAAAGACACCATTGTCAAAAATA
CGCAATcttctttatcaaaattttacaaaatggtTATTAATGAAGCTGAG
GTTGCGAAATGGAATCGACTCCTGGAAAGCCTTGGTTGTCCTAGCCCACA
CTCCTTGTTTCTGTTCAATTTTGTTGCAGATTCCTTCTTAACCCAGATTC
TCTCATATTATGGGTCTCAAGCTGAGATAGAGTTGTTGGACATGGAAAAG
CTACAAATATCAAAGGATGAGGAGCAAACCTTATATTACGTGGCTGGGTA
TCTTGTTTTTTCGCTCAAACAAGGCATGCGGACCTCTGTTTTAAAACCCA
ATCCACTGGTAACTTTACTCGAAAGTTGGGGTACCAAAGACAGTAACTCA
TACAAAGACTTGGGAATCAACGAGTACGTTAGAGCTTGGGTTGAGCAGGT
GGATAGAGGCGGCTTATTCAAAGTGAACGGCCAATTTTATCGGATTGTTG
TTAGGATTGAAAAACTAGCACGGACTATTTTGAATCTGAATTTGTTTGCT
ACGTACTCTGGGGAAAATATCAAGGAAGTCCTCAAGACCAAATTTTTATC
ATGCACAACTTTGTTGAATGAGTGGAAATCCCTCACTATTAGTTTGGATG
AAAATGTGAGGTCAAAGCTTTTCCTCAAATTAATTTCAAAGTGGATAAAT
GTTAGAGCTAATGCATTTGTTAAGNTGGCATCATTTATAAATAATTAAGA
GTGTTTATAGTAAAAGAATAAAACTGTTGACTTTCAAATTAAAATGTCCT
AGttgtttttttacaagtttCAAGCTGTCTAatttaatattgaaattttg
accggATTTTCTCTGTtccaatttcttaaaaattccAGTCGAGGGGGTAA
AACACTCCNGAAGGTGTGGCTGCAGCAATATAAATGGAGAAAGGCCCAAG
AAGGAGAGAAGGTAACTGAACAAGGAGAGCCATCTCTCAGAAAAGGACTA
GCAAAAAAGGGAGCCAAGAAAATTGTTGATNttttttcttattttgatcg
tGATTCCTGTTTcctaaaataaaatcaaaaattgcattttgttGAAATTA
ATTAGCCAGGTTAGGCCTTTTCCAAACGAATTCCTTAATTCATTTTCCTG
GTTTTATTAGCGTTTTTGGTTTTTGACGCGAAAAATAGTCCCAATAAGCT
TATCTCGACTAGACTACACTGGGTGTCTACGGATTTCTTTCTGTTGTTTT
CAAGGTGC Run BLAST on NCBI protein sequence of TCONS_00028939-protein >TCONS_00028939-protein ID=TCONS_00028939-protein|Name=TCONS_00028939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
QKTMLEIIKKDTIVKNTQSSLSKFYKMVINEAEVAKWNRLLESLGCPSPH
SLFLFNFVADSFLTQILSYYGSQAEIELLDMEKLQISKDEEQTLYYVAGY
LVFSLKQGMRTSVLKPNPLVTLLESWGTKDSNSYKDLGINEYVRAWVEQV
DRGGLFKVNGQFYRIVVRIEKLARTILNLNLFATYSGENIKEVLKTKFLS
CTTLLNEWKSLTISLDENVRSKLFLKLISKWINVRANAFVKXASFINN Run BLAST on NCBI transcript from alignment at sc0000715:147487..148744 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028939 ID=TCONS_00028939|Name=TCONS_00028939|organism=Clytia hemisphaerica|type=transcript|length=1258bp|location=Sequence derived from alignment at sc0000715:147487..148744 (Clytia hemisphaerica)
GCACCTTGAAAACAACAGAAAGAAATCCGTAGACACCCAGTGTAGTCTAG
TCGAGATAAGCTTATTGGGACTATTTTTCGCGTCAAAAACCAAAAACGCT
AATAAAACCAGGAAAATGAATTAAGGAATTCGTTTGGAAAAGGCCTAACC
TGGCTAATTAATTTCaacaaaatgcaatttttgattttattttaggAAAC
AGGAATCacgatcaaaataagaaaaaaNATCAACAATTTTCTTGGCTCCC
TTTTTTGCTAGTCCTTTTCTGAGAGATGGCTCTCCTTGTTCAGTTACCTT
CTCTCCTTCTTGGGCCTTTCTCCATTTATATTGCTGCAGCCACACCTTCN
GGAGTGTTTTACCCCCTCGACTggaatttttaagaaattggaACAGAGAA
AATccggtcaaaatttcaatattaaatTAGACAGCTTGaaacttgtaaaa
aaacaaCTAGGACATTTTAATTTGAAAGTCAACAGTTTTATTCTTTTACT
ATAAACACTCTTAATTATTTATAAATGATGCCANCTTAACAAATGCATTA
GCTCTAACATTTATCCACTTTGAAATTAATTTGAGGAAAAGCTTTGACCT
CACATTTTCATCCAAACTAATAGTGAGGGATTTCCACTCATTCAACAAAG
TTGTGCATGATAAAAATTTGGTCTTGAGGACTTCCTTGATATTTTCCCCA
GAGTACGTAGCAAACAAATTCAGATTCAAAATAGTCCGTGCTAGTTTTTC
AATCCTAACAACAATCCGATAAAATTGGCCGTTCACTTTGAATAAGCCGC
CTCTATCCACCTGCTCAACCCAAGCTCTAACGTACTCGTTGATTCCCAAG
TCTTTGTATGAGTTACTGTCTTTGGTACCCCAACTTTCGAGTAAAGTTAC
CAGTGGATTGGGTTTTAAAACAGAGGTCCGCATGCCTTGTTTGAGCGAAA
AAACAAGATACCCAGCCACGTAATATAAGGTTTGCTCCTCATCCTTTGAT
ATTTGTAGCTTTTCCATGTCCAACAACTCTATCTCAGCTTGAGACCCATA
ATATGAGAGAATCTGGGTTAAGAAGGAATCTGCAACAAAATTGAACAGAA
ACAAGGAGTGTGGGCTAGGACAACCAAGGCTTTCCAGGAGTCGATTCCAT
TTCGCAACCTCAGCTTCATTAATAaccattttgtaaaattttgataaaga
agATTGCGTATTTTTGACAATGGTGTCTTTCTTAATAATTTCAAGCATGG
TCTTttga Coding sequence (CDS) from alignment at sc0000715:147487..148744 >TCONS_00028939 ID=TCONS_00028939|Name=TCONS_00028939|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0000715:147487..148744 (Clytia hemisphaerica)
TTAATTATTTATAAATGATGCCANCTTAACAAATGCATTAGCTCTAACAT
TTATCCACTTTGAAATTAATTTGAGGAAAAGCTTTGACCTCACATTTTCA
TCCAAACTAATAGTGAGGGATTTCCACTCATTCAACAAAGTTGTGCATGA
TAAAAATTTGGTCTTGAGGACTTCCTTGATATTTTCCCCAGAGTACGTAG
CAAACAAATTCAGATTCAAAATAGTCCGTGCTAGTTTTTCAATCCTAACA
ACAATCCGATAAAATTGGCCGTTCACTTTGAATAAGCCGCCTCTATCCAC
CTGCTCAACCCAAGCTCTAACGTACTCGTTGATTCCCAAGTCTTTGTATG
AGTTACTGTCTTTGGTACCCCAACTTTCGAGTAAAGTTACCAGTGGATTG
GGTTTTAAAACAGAGGTCCGCATGCCTTGTTTGAGCGAAAAAACAAGATA
CCCAGCCACGTAATATAAGGTTTGCTCCTCATCCTTTGATATTTGTAGCT
TTTCCATGTCCAACAACTCTATCTCAGCTTGAGACCCATAATATGAGAGA
ATCTGGGTTAAGAAGGAATCTGCAACAAAATTGAACAGAAACAAGGAGTG
TGGGCTAGGACAACCAAGGCTTTCCAGGAGTCGATTCCATTTCGCAACCT
CAGCTTCATTAATAaccattttgtaaaattttgataaagaagATTGCGTA
TTTTTGACAATGGTGTCTTTCTTAATAATTTCAAGCATGGTCTTttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028939-exon-sc0000715-1491911889:147487..148744 | TCONS_00028939-exon-sc0000715-1491911889:147487..148744 | Clytia hemisphaerica | exon |
| TCONS_00028939-exon-sc0000715-1510915933:147487..148744 | TCONS_00028939-exon-sc0000715-1510915933:147487..148744 | Clytia hemisphaerica | exon |
| TCONS_00028939-exon-sc0000715-1575043694:147487..148744 | TCONS_00028939-exon-sc0000715-1575043694:147487..148744 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000715 | supercontig | sc0000715:147487..148744 . |
Blast
The following BLAST results are available for this feature:
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